##gff-version 3
NA12877_chrY	CAT	gene	78172	79950	.	-	.	source_gene_common_name=LOC124905300;source_gene=hg002_chrY_paternal_1;alternative_source_transcripts=hg002_chrY_paternal_1.1;gene_id=NA12877_ch_G0000001;gene_biotype=protein_coding;gene_name=LOC124905300;gene_sources=liftoff,augTM,transMap;ID=NA12877_ch_G0000001;Name=LOC124905300
NA12877_chrY	CAT	transcript	78172	79950	9920	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_G0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=NA12877_ch_T0000001;Name=LOC124905300
NA12877_chrY	CAT	exon	78172	78201	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=exon:NA12877_ch_T0000001:0;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	78172	78201	.	-	0	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=CDS:NA12877_ch_T0000001:0;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	78172	78174	.	-	0	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=stop_codon:NA12877_ch_T0000001;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	78202	78276	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=intron:NA12877_ch_T0000001:0;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	78277	78774	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=exon:NA12877_ch_T0000001:1;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	78277	78774	.	-	0	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=CDS:NA12877_ch_T0000001:1;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	78775	79014	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=intron:NA12877_ch_T0000001:1;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	79015	79385	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=exon:NA12877_ch_T0000001:2;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	79015	79385	.	-	2	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=CDS:NA12877_ch_T0000001:2;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	79386	79692	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=intron:NA12877_ch_T0000001:2;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	79693	79730	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=exon:NA12877_ch_T0000001:3;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	79693	79730	.	-	1	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=CDS:NA12877_ch_T0000001:3;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	79731	79909	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=intron:NA12877_ch_T0000001:3;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	79910	79950	.	-	.	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=exon:NA12877_ch_T0000001:4;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	79910	79950	.	-	0	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=CDS:NA12877_ch_T0000001:4;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	79948	79950	.	-	0	source_transcript=hg002_chrY_paternal_1.1;source_transcript_name=hg002_chrY_paternal_1.1;source_gene=hg002_chrY_paternal_1;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_1.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_1.1;transcript_score=299.284;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905300;alternative_source_transcripts=hg002_chrY_paternal_1.1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000001;gene_id=NA12877_ch_G0000001;Parent=NA12877_ch_T0000001;transcript_name=hg002_chrY_paternal_1.1;gene_name=LOC124905300;ID=start_codon:NA12877_ch_T0000001;Name=LOC124905300;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	84239	105528	.	+	.	source_gene_common_name=PLCXD1;source_gene=hg002_chrY_paternal_2;gene_id=NA12877_ch_G0000002;gene_biotype=protein_coding;gene_name=PLCXD1;gene_sources=liftoff,augTM,transMap;ID=NA12877_ch_G0000002;Name=PLCXD1
NA12877_chrY	CAT	transcript	84239	105528	9990	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_G0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=NA12877_ch_T0000002;Name=PLCXD1
NA12877_chrY	CAT	exon	84239	84541	.	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000002:0;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	84542	87014	.	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000002:0;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	87015	87162	.	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000002:1;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	87036	87162	.	+	0	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:NA12877_ch_T0000002:0;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	87036	87038	.	+	0	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=start_codon:NA12877_ch_T0000002;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	87163	91522	.	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000002:1;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	91523	91659	.	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000002:2;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	91523	91659	.	+	2	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:NA12877_ch_T0000002:1;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	91660	93439	.	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000002:2;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	93440	93568	.	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000002:3;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	93440	93568	.	+	0	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:NA12877_ch_T0000002:2;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	93569	94166	.	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000002:3;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	94167	94322	.	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000002:4;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	94167	94322	.	+	0	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:NA12877_ch_T0000002:3;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	94323	95702	.	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000002:4;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	95703	95886	.	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000002:5;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	95703	95886	.	+	0	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:NA12877_ch_T0000002:4;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	95887	101266	.	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000002:5;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	101267	105528	.	+	.	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000002:6;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	101267	101505	.	+	2	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:NA12877_ch_T0000002:5;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	101503	101505	.	+	0	source_transcript=hg002_chrY_paternal_2.7;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.7;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000002;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=stop_codon:NA12877_ch_T0000002;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	84239	105528	1000	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_G0000002;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=NA12877_ch_T0000003;Name=PLCXD1
NA12877_chrY	CAT	exon	84239	84541	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000003:0;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	84542	87014	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000003:0;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	87015	87162	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000003:1;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	87163	91522	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000003:1;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	91523	91659	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000003:2;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	91660	93439	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000003:2;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	93440	93568	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000003:3;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	93569	94166	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000003:3;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	94167	94322	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000003:4;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	94323	95702	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000003:4;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	95703	95886	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000003:5;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	95887	101266	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000003:5;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	101267	101949	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000003:6;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	101950	104060	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000003:6;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	104061	105528	.	+	.	source_transcript=hg002_chrY_paternal_2.8;source_transcript_name=hg002_chrY_paternal_2.1;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_2.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.8;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000003;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000003;transcript_name=hg002_chrY_paternal_2.1;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000003:7;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	86367	105528	9950	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_G0000002;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=NA12877_ch_T0000004;Name=PLCXD1
NA12877_chrY	CAT	exon	86367	86481	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000004:0;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	86482	87014	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000004:0;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	87015	87162	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000004:1;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	87036	87162	.	+	0	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:NA12877_ch_T0000004:0;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	87036	87038	.	+	0	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=start_codon:NA12877_ch_T0000004;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	87163	91522	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000004:1;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	91523	91659	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000004:2;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	91523	91659	.	+	2	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:NA12877_ch_T0000004:1;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	91660	93439	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000004:2;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	93440	93568	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000004:3;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	93440	93568	.	+	0	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:NA12877_ch_T0000004:2;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	93569	94166	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000004:3;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	94167	94322	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000004:4;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	94167	94322	.	+	0	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:NA12877_ch_T0000004:3;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	94323	95702	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000004:4;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	95703	95886	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000004:5;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	95703	95886	.	+	0	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:NA12877_ch_T0000004:4;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	95887	101266	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=intron:NA12877_ch_T0000004:5;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	101267	105528	.	+	.	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=exon:NA12877_ch_T0000004:6;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	101267	101505	.	+	2	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=CDS:NA12877_ch_T0000004:5;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	101503	101505	.	+	0	source_transcript=hg002_chrY_paternal_2.10;source_transcript_name=hg002_chrY_paternal_2.11;source_gene=hg002_chrY_paternal_2;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_2.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_2.10;transcript_score=199.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000004;gene_id=NA12877_ch_G0000002;Parent=NA12877_ch_T0000004;transcript_name=hg002_chrY_paternal_2.11;gene_name=PLCXD1;ID=stop_codon:NA12877_ch_T0000004;Name=PLCXD1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	106931	123433	.	-	.	source_gene_common_name=GTPBP6;source_gene=hg002_chrY_paternal_3;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;gene_id=NA12877_ch_G0000003;gene_biotype=protein_coding;gene_name=GTPBP6;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000003;Name=GTPBP6
NA12877_chrY	CAT	transcript	106931	121483	100	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_G0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=NA12877_ch_T0000005;Name=GTPBP6
NA12877_chrY	CAT	exon	106931	107369	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000005:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	107246	107369	.	-	1	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000005:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	107246	107248	.	-	0	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=stop_codon:NA12877_ch_T0000005;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	107370	109165	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000005:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	109166	109318	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000005:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	109166	109318	.	-	1	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000005:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	109319	109537	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000005:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	109538	109686	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000005:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	109538	109686	.	-	0	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000005:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	109687	113224	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000005:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	113225	113433	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000005:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	113225	113433	.	-	2	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000005:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	113434	114434	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000005:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	114435	114827	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000005:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	114435	114827	.	-	2	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000005:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	114828	116132	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000005:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	116133	116200	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000005:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	116133	116200	.	-	1	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000005:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	116201	116870	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000005:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	116871	117001	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000005:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	116871	117001	.	-	0	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000005:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	117002	117206	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000005:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	117207	117277	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000005:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	117207	117224	.	-	0	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000005:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	117222	117224	.	-	0	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=start_codon:NA12877_ch_T0000005;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	117278	121417	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000005:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	121418	121483	.	-	.	source_transcript=hg002_chrY_paternal_3.1;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.1,hg002_chrY_paternal_3.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000005;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000005;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000005:8;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	106931	123433	100	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_G0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=NA12877_ch_T0000006;Name=GTPBP6
NA12877_chrY	CAT	exon	106931	107369	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000006:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	107246	107369	.	-	1	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000006:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	107246	107248	.	-	0	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=stop_codon:NA12877_ch_T0000006;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	107370	109165	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000006:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	109166	109318	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000006:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	109166	109318	.	-	1	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000006:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	109319	109537	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000006:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	109538	109686	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000006:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	109538	109686	.	-	0	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000006:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	109687	113224	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000006:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	113225	113433	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000006:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	113225	113433	.	-	2	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000006:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	113434	114668	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000006:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	114669	114827	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000006:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	114669	114827	.	-	2	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000006:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	114828	116132	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000006:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	116133	116200	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000006:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	116133	116200	.	-	1	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000006:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	116201	116870	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000006:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	116871	117001	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000006:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	116871	117001	.	-	0	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000006:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	117002	117206	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000006:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	117207	117277	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000006:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	117207	117277	.	-	2	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000006:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	117278	121551	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000006:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	121552	121689	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000006:8;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	121552	121689	.	-	2	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000006:8;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	121690	123075	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000006:8;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	123076	123433	.	-	.	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000006:9;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	123076	123424	.	-	0	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000006:9;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	123422	123424	.	-	0	source_transcript=hg002_chrY_paternal_3.2;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.2,hg002_chrY_paternal_3.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000006;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000006;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=start_codon:NA12877_ch_T0000006;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	106931	123433	100	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_G0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=NA12877_ch_T0000007;Name=GTPBP6
NA12877_chrY	CAT	exon	106931	107369	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000007:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	107246	107369	.	-	1	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000007:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	107246	107248	.	-	0	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=stop_codon:NA12877_ch_T0000007;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	107370	109165	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000007:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	109166	109318	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000007:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	109166	109318	.	-	1	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000007:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	109319	109537	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000007:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	109538	109686	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000007:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	109538	109686	.	-	0	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000007:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	109687	113224	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000007:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	113225	113433	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000007:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	113225	113433	.	-	2	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000007:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	113434	114434	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000007:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	114435	114827	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000007:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	114435	114827	.	-	2	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000007:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	114828	116132	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000007:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	116133	116200	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000007:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	116133	116200	.	-	1	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000007:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	116201	116870	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000007:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	116871	117001	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000007:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	116871	117001	.	-	0	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000007:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	117002	117206	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000007:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	117207	117277	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000007:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	117207	117277	.	-	2	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000007:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	117278	121551	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000007:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	121552	121689	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000007:8;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	121552	121689	.	-	2	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000007:8;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	121690	123075	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000007:8;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	123076	123433	.	-	.	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000007:9;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	123076	123424	.	-	0	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000007:9;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	123422	123424	.	-	0	source_transcript=hg002_chrY_paternal_3.3;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.3,hg002_chrY_paternal_3.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000007;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000007;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=start_codon:NA12877_ch_T0000007;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	106931	123433	100	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_G0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=NA12877_ch_T0000008;Name=GTPBP6
NA12877_chrY	CAT	exon	106931	107369	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000008:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	107246	107369	.	-	1	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000008:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	107246	107248	.	-	0	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=stop_codon:NA12877_ch_T0000008;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	107370	109165	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000008:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	109166	109318	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000008:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	109166	109318	.	-	1	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000008:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	109319	109537	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000008:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	109538	109686	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000008:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	109538	109686	.	-	0	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000008:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	109687	113224	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000008:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	113225	113433	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000008:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	113225	113433	.	-	2	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000008:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	113434	114434	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000008:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	114435	114827	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000008:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	114435	114827	.	-	2	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000008:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	114828	116132	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000008:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	116133	116200	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000008:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	116133	116200	.	-	1	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000008:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	116201	116870	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000008:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	116871	117001	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000008:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	116871	117001	.	-	0	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000008:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	117002	117206	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000008:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	117207	117277	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000008:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	117207	117277	.	-	2	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000008:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	117278	121551	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000008:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	121552	121689	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000008:8;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	121552	121621	.	-	0	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000008:8;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	121619	121621	.	-	0	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=start_codon:NA12877_ch_T0000008;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	121690	121916	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000008:8;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	121917	122122	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000008:9;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	122123	123075	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000008:9;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	123076	123433	.	-	.	source_transcript=hg002_chrY_paternal_3.4;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.4,hg002_chrY_paternal_3.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000008;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000008;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000008:10;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	106931	123433	100	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_G0000003;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=NA12877_ch_T0000009;Name=GTPBP6
NA12877_chrY	CAT	exon	106931	107369	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000009:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	107246	107369	.	-	1	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000009:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	107246	107248	.	-	0	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=stop_codon:NA12877_ch_T0000009;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	107370	109165	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000009:0;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	109166	109318	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000009:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	109166	109318	.	-	1	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000009:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	109319	109537	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000009:1;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	109538	109686	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000009:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	109538	109686	.	-	0	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000009:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	109687	113224	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000009:2;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	113225	113433	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000009:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	113225	113433	.	-	2	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000009:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	113434	114434	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000009:3;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	114435	114827	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000009:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	114435	114827	.	-	2	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000009:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	114828	116132	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000009:4;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	116133	116200	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000009:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	116133	116200	.	-	1	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000009:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	116201	116870	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000009:5;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	116871	117001	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000009:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	116871	117001	.	-	0	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000009:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	117002	117206	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000009:6;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	117207	117277	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000009:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	117207	117277	.	-	2	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000009:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	117278	121551	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000009:7;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	121552	121689	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000009:8;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	121552	121621	.	-	0	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=CDS:NA12877_ch_T0000009:8;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	121619	121621	.	-	0	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=start_codon:NA12877_ch_T0000009;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	121690	121916	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000009:8;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	121917	122057	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000009:9;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	122058	123075	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=intron:NA12877_ch_T0000009:9;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	123076	123433	.	-	.	source_transcript=hg002_chrY_paternal_3.5;source_transcript_name=hg002_chrY_paternal_3.5;source_gene=hg002_chrY_paternal_3;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_3;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_3.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_3.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=hg002_chrY_paternal_3.5,hg002_chrY_paternal_3.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000009;gene_id=NA12877_ch_G0000003;Parent=NA12877_ch_T0000009;transcript_name=hg002_chrY_paternal_3.5;gene_name=GTPBP6;ID=exon:NA12877_ch_T0000009:10;Name=GTPBP6;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	123782	125966	.	+	.	source_gene_common_name=LINC00685;source_gene=hg002_chrY_paternal_4;alternative_source_transcripts=hg002_chrY_paternal_4.1,hg002_chrY_paternal_4.1;gene_id=NA12877_ch_G0000004;gene_biotype=lncRNA;gene_name=LINC00685;gene_sources=liftoff;ID=NA12877_ch_G0000004;Name=LINC00685
NA12877_chrY	CAT	transcript	123782	125966	1000	+	.	source_transcript=hg002_chrY_paternal_4.1;source_transcript_name=hg002_chrY_paternal_4.1;source_gene=hg002_chrY_paternal_4;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_4;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_4.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_4.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=hg002_chrY_paternal_4.1,hg002_chrY_paternal_4.1;transcript_id=NA12877_ch_T0000010;gene_id=NA12877_ch_G0000004;Parent=NA12877_ch_G0000004;transcript_name=hg002_chrY_paternal_4.1;gene_name=LINC00685;ID=NA12877_ch_T0000010;Name=LINC00685
NA12877_chrY	CAT	exon	123782	124185	.	+	.	source_transcript=hg002_chrY_paternal_4.1;source_transcript_name=hg002_chrY_paternal_4.1;source_gene=hg002_chrY_paternal_4;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_4;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_4.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_4.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=hg002_chrY_paternal_4.1,hg002_chrY_paternal_4.1;transcript_id=NA12877_ch_T0000010;gene_id=NA12877_ch_G0000004;Parent=NA12877_ch_T0000010;transcript_name=hg002_chrY_paternal_4.1;gene_name=LINC00685;ID=exon:NA12877_ch_T0000010:0;Name=LINC00685;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	124186	124841	.	+	.	source_transcript=hg002_chrY_paternal_4.1;source_transcript_name=hg002_chrY_paternal_4.1;source_gene=hg002_chrY_paternal_4;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_4;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_4.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_4.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=hg002_chrY_paternal_4.1,hg002_chrY_paternal_4.1;transcript_id=NA12877_ch_T0000010;gene_id=NA12877_ch_G0000004;Parent=NA12877_ch_T0000010;transcript_name=hg002_chrY_paternal_4.1;gene_name=LINC00685;ID=intron:NA12877_ch_T0000010:0;Name=LINC00685;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	124842	125966	.	+	.	source_transcript=hg002_chrY_paternal_4.1;source_transcript_name=hg002_chrY_paternal_4.1;source_gene=hg002_chrY_paternal_4;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_4;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_4.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_4.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=hg002_chrY_paternal_4.1,hg002_chrY_paternal_4.1;transcript_id=NA12877_ch_T0000010;gene_id=NA12877_ch_G0000004;Parent=NA12877_ch_T0000010;transcript_name=hg002_chrY_paternal_4.1;gene_name=LINC00685;ID=exon:NA12877_ch_T0000010:1;Name=LINC00685;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	123782	125966	1000	+	.	source_transcript=hg002_chrY_paternal_4.2;source_transcript_name=hg002_chrY_paternal_4.1;source_gene=hg002_chrY_paternal_4;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_4;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_4.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_4.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=hg002_chrY_paternal_4.2,hg002_chrY_paternal_4.2;transcript_id=NA12877_ch_T0000011;gene_id=NA12877_ch_G0000004;Parent=NA12877_ch_G0000004;transcript_name=hg002_chrY_paternal_4.1;gene_name=LINC00685;ID=NA12877_ch_T0000011;Name=LINC00685
NA12877_chrY	CAT	exon	123782	125966	.	+	.	source_transcript=hg002_chrY_paternal_4.2;source_transcript_name=hg002_chrY_paternal_4.1;source_gene=hg002_chrY_paternal_4;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_4;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_4.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_4.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=hg002_chrY_paternal_4.2,hg002_chrY_paternal_4.2;transcript_id=NA12877_ch_T0000011;gene_id=NA12877_ch_G0000004;Parent=NA12877_ch_T0000011;transcript_name=hg002_chrY_paternal_4.1;gene_name=LINC00685;ID=exon:NA12877_ch_T0000011:0;Name=LINC00685;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	141015	198093	.	-	.	source_gene_common_name=PPP2R3B;source_gene=hg002_chrY_paternal_5;gene_id=NA12877_ch_G0000005;gene_biotype=protein_coding;gene_name=PPP2R3B;gene_sources=liftoff,augTM,transMap,transMap_pairwise;ID=NA12877_ch_G0000005;Name=PPP2R3B
NA12877_chrY	CAT	transcript	141015	175400	9990	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;frameshift=True;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_G0000005;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=NA12877_ch_T0000012;Name=PPP2R3B
NA12877_chrY	CAT	exon	141015	141568	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	141144	141568	.	-	2	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000012:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	141144	141146	.	-	0	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=stop_codon:NA12877_ch_T0000012;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	141569	141569	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	141570	141841	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	141570	141841	.	-	1	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000012:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	141842	145380	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	145381	145487	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	145381	145487	.	-	0	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000012:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	145488	145554	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	145555	145673	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	145555	145673	.	-	2	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000012:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	145674	147581	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	147582	147757	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	147582	147757	.	-	1	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000012:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	147758	148123	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	148124	148213	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	148124	148213	.	-	1	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000012:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	148214	148699	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	148700	148748	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	148700	148748	.	-	2	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000012:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	148749	152305	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	152306	152462	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	152306	152462	.	-	0	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000012:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	152463	152963	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	152964	153050	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	152964	153050	.	-	0	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000012:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	153051	153490	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	153491	153565	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	153491	153565	.	-	0	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000012:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	153566	154023	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	154024	154126	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	154024	154126	.	-	1	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000012:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	154127	154379	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	154380	154483	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	154380	154483	.	-	0	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000012:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	154484	168472	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	168473	168658	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	168473	168499	.	-	0	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000012:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	168497	168499	.	-	0	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=start_codon:NA12877_ch_T0000012;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	168659	169322	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	169323	169400	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:13;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	169401	174844	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000012:13;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	174845	175400	.	-	.	source_transcript=hg002_chrY_paternal_5.3;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.3;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000012;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000012;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000012:14;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	141015	187338	9990	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;frameshift=True;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_G0000005;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=NA12877_ch_T0000013;Name=PPP2R3B
NA12877_chrY	CAT	exon	141015	141568	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	141144	141568	.	-	2	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	141144	141146	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=stop_codon:NA12877_ch_T0000013;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	141569	141569	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000013:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	141570	141841	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	141570	141841	.	-	1	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	141842	145380	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000013:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	145381	145487	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	145381	145487	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	145488	145554	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000013:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	145555	145673	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	145555	145673	.	-	2	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	145674	147581	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000013:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	147582	147757	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	147582	147757	.	-	1	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	147758	148123	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000013:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	148124	148213	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	148124	148213	.	-	1	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	148214	148699	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000013:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	148700	148748	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	148700	148748	.	-	2	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	148749	152305	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000013:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	152306	152462	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	152306	152462	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	152463	152963	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000013:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	152964	153050	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	152964	153050	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	153051	153490	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000013:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	153491	153565	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	153491	153565	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	153566	154023	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000013:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	154024	154126	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	154024	154126	.	-	1	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	154127	154379	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000013:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	154380	154483	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	154380	154483	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	154484	168472	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000013:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	168473	168658	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	168473	168658	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	168659	184660	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000013:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	184661	187338	.	-	.	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000013:13;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	184661	184900	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000013:13;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	184898	184900	.	-	0	source_transcript=hg002_chrY_paternal_5.4;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.4;transcript_score=299.954;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000013;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000013;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=start_codon:NA12877_ch_T0000013;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	141015	198093	9990	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;frameshift=True;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_G0000005;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=NA12877_ch_T0000014;Name=PPP2R3B
NA12877_chrY	CAT	exon	141015	141568	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	141144	141568	.	-	2	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	141144	141146	.	-	0	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=stop_codon:NA12877_ch_T0000014;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	141569	141569	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000014:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	141570	141841	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	141570	141841	.	-	1	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	141842	145380	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000014:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	145381	145487	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	145381	145487	.	-	0	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	145488	145554	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000014:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	145555	145673	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	145555	145673	.	-	2	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	145674	147581	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000014:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	147582	147757	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	147582	147757	.	-	1	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	147758	148123	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000014:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	148124	148213	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	148124	148213	.	-	1	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	148214	148699	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000014:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	148700	148748	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	148700	148748	.	-	2	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	148749	152305	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000014:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	152306	152462	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	152306	152462	.	-	0	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	152463	152963	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000014:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	152964	153050	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	152964	153050	.	-	0	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	153051	153490	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000014:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	153491	153565	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	153491	153565	.	-	0	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	153566	154023	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000014:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	154024	154126	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	154024	154126	.	-	1	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	154127	154379	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000014:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	154380	154483	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	154380	154483	.	-	0	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	154484	168472	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000014:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	168473	168658	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	168473	168658	.	-	0	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	168659	197553	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000014:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	197554	198093	.	-	.	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000014:13;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	197554	197877	.	-	0	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000014:13;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	197875	197877	.	-	0	source_transcript=hg002_chrY_paternal_5.5;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.5;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000014;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000014;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=start_codon:NA12877_ch_T0000014;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	141015	198093	9990	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;frameshift=True;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_G0000005;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=NA12877_ch_T0000015;Name=PPP2R3B
NA12877_chrY	CAT	exon	141015	141568	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	141144	141568	.	-	2	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000015:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	141144	141146	.	-	0	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=stop_codon:NA12877_ch_T0000015;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	141569	141569	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	141570	141841	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	141570	141841	.	-	1	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000015:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	141842	145380	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	145381	145487	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	145381	145487	.	-	0	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000015:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	145488	145554	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	145555	145673	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	145555	145673	.	-	2	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000015:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	145674	147581	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	147582	147757	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	147582	147757	.	-	1	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000015:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	147758	148123	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	148124	148213	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	148124	148213	.	-	1	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000015:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	148214	148699	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	148700	148748	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	148700	148748	.	-	2	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000015:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	148749	152305	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	152306	152462	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	152306	152462	.	-	0	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000015:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	152463	152963	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	152964	153050	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	152964	153050	.	-	0	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000015:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	153051	153490	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	153491	153565	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	153491	153565	.	-	0	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000015:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	153566	154023	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	154024	154126	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	154024	154126	.	-	1	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000015:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	154127	154379	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	154380	154483	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	154380	154483	.	-	0	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000015:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	154484	168472	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	168473	168658	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	168473	168499	.	-	0	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000015:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	168497	168499	.	-	0	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=start_codon:NA12877_ch_T0000015;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	168659	169322	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	169323	169400	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:13;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	169401	197553	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000015:13;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	197554	198093	.	-	.	source_transcript=hg002_chrY_paternal_5.6;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.6;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000015;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000015;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000015:14;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	141015	198093	9990	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;frameshift=True;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_G0000005;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=NA12877_ch_T0000016;Name=PPP2R3B
NA12877_chrY	CAT	exon	141015	141568	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	141144	141568	.	-	2	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000016:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	141144	141146	.	-	0	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=stop_codon:NA12877_ch_T0000016;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	141569	141569	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:0;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	141570	141841	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	141570	141841	.	-	1	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000016:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	141842	145380	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:1;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	145381	145487	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	145381	145487	.	-	0	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000016:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	145488	145554	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:2;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	145555	145673	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	145555	145673	.	-	2	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000016:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	145674	147581	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:3;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	147582	147757	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	147582	147757	.	-	1	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000016:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	147758	148123	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:4;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	148124	148213	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	148124	148213	.	-	1	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000016:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	148214	148699	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:5;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	148700	148748	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	148700	148748	.	-	2	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000016:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	148749	152305	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:6;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	152306	152462	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	152306	152462	.	-	0	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000016:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	152463	152963	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:7;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	152964	153050	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	152964	153050	.	-	0	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000016:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	153051	153490	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:8;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	153491	153565	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	153491	153565	.	-	0	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000016:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	153566	154023	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:9;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	154024	154126	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	154024	154126	.	-	1	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000016:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	154127	154379	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:10;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	154380	154483	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	154380	154483	.	-	0	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000016:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	154484	168472	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:11;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	168473	168658	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	168473	168499	.	-	0	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=CDS:NA12877_ch_T0000016:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	168497	168499	.	-	0	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=start_codon:NA12877_ch_T0000016;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	168659	169322	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:12;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	169323	169400	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:13;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	169401	196227	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:13;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	196228	196291	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:14;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	196292	197553	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=intron:NA12877_ch_T0000016:14;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	197554	198093	.	-	.	source_transcript=hg002_chrY_paternal_5.7;source_transcript_name=hg002_chrY_paternal_5.8;source_gene=hg002_chrY_paternal_5;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_5.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_5.7;transcript_score=299.944;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;AdditionalSources=augTM,liftoff,transMap_pairwise;transcript_id=NA12877_ch_T0000016;gene_id=NA12877_ch_G0000005;Parent=NA12877_ch_T0000016;transcript_name=hg002_chrY_paternal_5.8;gene_name=PPP2R3B;ID=exon:NA12877_ch_T0000016:15;Name=PPP2R3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	240781	283145	.	+	.	source_gene_common_name=LOC102724521;source_gene=hg002_chrY_paternal_6;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;gene_id=NA12877_ch_G0000006;gene_biotype=lncRNA;gene_name=LOC102724521;gene_sources=liftoff;ID=NA12877_ch_G0000006;Name=LOC102724521
NA12877_chrY	CAT	transcript	240781	283145	1000	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_G0000006;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=NA12877_ch_T0000017;Name=LOC102724521
NA12877_chrY	CAT	exon	240781	241249	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000017:0;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	241250	244596	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000017:0;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	244597	244854	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000017:1;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	244855	246336	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000017:1;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	246337	246451	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000017:2;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	246452	248367	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000017:2;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	248368	248534	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000017:3;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	248535	251554	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000017:3;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	251555	251627	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000017:4;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	251628	251860	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000017:4;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	251861	252165	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000017:5;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	252166	269612	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000017:5;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	269613	270225	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000017:6;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	270226	279903	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000017:6;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	279904	280024	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000017:7;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	280025	281100	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000017:7;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	281101	281299	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000017:8;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	281300	281905	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000017:8;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	281906	283145	.	+	.	source_transcript=hg002_chrY_paternal_6.1;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.1,hg002_chrY_paternal_6.1;transcript_id=NA12877_ch_T0000017;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000017;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000017:9;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	241025	253572	1000	+	.	source_transcript=hg002_chrY_paternal_6.2;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.2,hg002_chrY_paternal_6.2;transcript_id=NA12877_ch_T0000018;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_G0000006;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=NA12877_ch_T0000018;Name=LOC102724521
NA12877_chrY	CAT	exon	241025	241249	.	+	.	source_transcript=hg002_chrY_paternal_6.2;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.2,hg002_chrY_paternal_6.2;transcript_id=NA12877_ch_T0000018;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000018;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000018:0;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	241250	244596	.	+	.	source_transcript=hg002_chrY_paternal_6.2;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.2,hg002_chrY_paternal_6.2;transcript_id=NA12877_ch_T0000018;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000018;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000018:0;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	244597	244854	.	+	.	source_transcript=hg002_chrY_paternal_6.2;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.2,hg002_chrY_paternal_6.2;transcript_id=NA12877_ch_T0000018;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000018;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000018:1;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	244855	246336	.	+	.	source_transcript=hg002_chrY_paternal_6.2;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.2,hg002_chrY_paternal_6.2;transcript_id=NA12877_ch_T0000018;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000018;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000018:1;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	246337	246451	.	+	.	source_transcript=hg002_chrY_paternal_6.2;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.2,hg002_chrY_paternal_6.2;transcript_id=NA12877_ch_T0000018;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000018;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000018:2;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	246452	248367	.	+	.	source_transcript=hg002_chrY_paternal_6.2;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.2,hg002_chrY_paternal_6.2;transcript_id=NA12877_ch_T0000018;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000018;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000018:2;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	248368	248534	.	+	.	source_transcript=hg002_chrY_paternal_6.2;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.2,hg002_chrY_paternal_6.2;transcript_id=NA12877_ch_T0000018;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000018;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000018:3;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	248535	252077	.	+	.	source_transcript=hg002_chrY_paternal_6.2;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.2,hg002_chrY_paternal_6.2;transcript_id=NA12877_ch_T0000018;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000018;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000018:3;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	252078	252165	.	+	.	source_transcript=hg002_chrY_paternal_6.2;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.2,hg002_chrY_paternal_6.2;transcript_id=NA12877_ch_T0000018;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000018;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000018:4;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	252166	252887	.	+	.	source_transcript=hg002_chrY_paternal_6.2;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.2,hg002_chrY_paternal_6.2;transcript_id=NA12877_ch_T0000018;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000018;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=intron:NA12877_ch_T0000018:4;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	252888	253572	.	+	.	source_transcript=hg002_chrY_paternal_6.2;source_transcript_name=hg002_chrY_paternal_6.1;source_gene=hg002_chrY_paternal_6;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_6;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_6.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_6.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724521;alternative_source_transcripts=hg002_chrY_paternal_6.2,hg002_chrY_paternal_6.2;transcript_id=NA12877_ch_T0000018;gene_id=NA12877_ch_G0000006;Parent=NA12877_ch_T0000018;transcript_name=hg002_chrY_paternal_6.1;gene_name=LOC102724521;ID=exon:NA12877_ch_T0000018:5;Name=LOC102724521;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	440827	474685	.	+	.	source_gene_common_name=SHOX;source_gene=hg002_chrY_paternal_9;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;gene_id=NA12877_ch_G0000007;gene_biotype=protein_coding;gene_name=SHOX;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000007;Name=SHOX
NA12877_chrY	CAT	transcript	440827	474685	100	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_G0000007;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=NA12877_ch_T0000019;Name=SHOX
NA12877_chrY	CAT	exon	440827	441087	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:NA12877_ch_T0000019:0;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	441088	446592	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:NA12877_ch_T0000019:0;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	446593	447301	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:NA12877_ch_T0000019:1;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	447025	447301	.	+	0	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:NA12877_ch_T0000019:0;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	447025	447027	.	+	0	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=start_codon:NA12877_ch_T0000019;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	447302	450744	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:NA12877_ch_T0000019:1;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	450745	450953	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:NA12877_ch_T0000019:2;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	450745	450953	.	+	2	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:NA12877_ch_T0000019:1;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	450954	456762	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:NA12877_ch_T0000019:2;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	456763	456820	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:NA12877_ch_T0000019:3;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	456763	456820	.	+	0	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:NA12877_ch_T0000019:2;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	456821	456940	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:NA12877_ch_T0000019:3;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	456941	457029	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:NA12877_ch_T0000019:4;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	456941	457029	.	+	2	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:NA12877_ch_T0000019:3;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	457030	474058	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:NA12877_ch_T0000019:4;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	474059	474685	.	+	.	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:NA12877_ch_T0000019:5;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	474059	474103	.	+	0	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:NA12877_ch_T0000019:4;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	474101	474103	.	+	0	source_transcript=hg002_chrY_paternal_9.1;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.1,hg002_chrY_paternal_9.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000019;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000019;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=stop_codon:NA12877_ch_T0000019;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	446918	466876	100	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_G0000007;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=NA12877_ch_T0000020;Name=SHOX
NA12877_chrY	CAT	exon	446918	447301	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:NA12877_ch_T0000020:0;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	447025	447301	.	+	0	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:NA12877_ch_T0000020:0;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	447025	447027	.	+	0	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=start_codon:NA12877_ch_T0000020;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	447302	450744	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:NA12877_ch_T0000020:0;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	450745	450953	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:NA12877_ch_T0000020:1;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	450745	450953	.	+	2	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:NA12877_ch_T0000020:1;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	450954	456762	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:NA12877_ch_T0000020:1;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	456763	456820	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:NA12877_ch_T0000020:2;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	456763	456820	.	+	0	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:NA12877_ch_T0000020:2;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	456821	456940	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:NA12877_ch_T0000020:2;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	456941	457029	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:NA12877_ch_T0000020:3;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	456941	457029	.	+	2	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:NA12877_ch_T0000020:3;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	457030	460331	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=intron:NA12877_ch_T0000020:3;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	460332	466876	.	+	.	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=exon:NA12877_ch_T0000020:4;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	460332	460577	.	+	0	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=CDS:NA12877_ch_T0000020:4;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	460575	460577	.	+	0	source_transcript=hg002_chrY_paternal_9.2;source_transcript_name=hg002_chrY_paternal_9.2;source_gene=hg002_chrY_paternal_9;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_9.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_9.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=hg002_chrY_paternal_9.2,hg002_chrY_paternal_9.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000020;gene_id=NA12877_ch_G0000007;Parent=NA12877_ch_T0000020;transcript_name=hg002_chrY_paternal_9.2;gene_name=SHOX;ID=stop_codon:NA12877_ch_T0000020;Name=SHOX;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1090805	1103038	.	-	.	source_gene_common_name=LOC101928032;source_gene=hg002_chrY_paternal_21;alternative_source_transcripts=hg002_chrY_paternal_21.10,hg002_chrY_paternal_21.14,hg002_chrY_paternal_21.15,hg002_chrY_paternal_21.11,hg002_chrY_paternal_21.1,hg002_chrY_paternal_21.18,hg002_chrY_paternal_21.9,hg002_chrY_paternal_21.17;gene_id=NA12877_ch_G0000008;gene_biotype=lncRNA;gene_name=LOC101928032;gene_sources=transMap,transMap_pairwise;ID=NA12877_ch_G0000008;Name=LOC101928032
NA12877_chrY	CAT	transcript	1090805	1103038	1000	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.10,hg002_chrY_paternal_21.14,hg002_chrY_paternal_21.15,hg002_chrY_paternal_21.11,hg002_chrY_paternal_21.1,hg002_chrY_paternal_21.18,hg002_chrY_paternal_21.9,hg002_chrY_paternal_21.17;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000021;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_G0000008;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=NA12877_ch_T0000021;Name=LOC101928032
NA12877_chrY	CAT	exon	1090805	1090873	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.10,hg002_chrY_paternal_21.14,hg002_chrY_paternal_21.15,hg002_chrY_paternal_21.11,hg002_chrY_paternal_21.1,hg002_chrY_paternal_21.18,hg002_chrY_paternal_21.9,hg002_chrY_paternal_21.17;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000021;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000021;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:NA12877_ch_T0000021:0;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1090874	1093684	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.10,hg002_chrY_paternal_21.14,hg002_chrY_paternal_21.15,hg002_chrY_paternal_21.11,hg002_chrY_paternal_21.1,hg002_chrY_paternal_21.18,hg002_chrY_paternal_21.9,hg002_chrY_paternal_21.17;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000021;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000021;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:NA12877_ch_T0000021:0;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1093685	1093819	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.10,hg002_chrY_paternal_21.14,hg002_chrY_paternal_21.15,hg002_chrY_paternal_21.11,hg002_chrY_paternal_21.1,hg002_chrY_paternal_21.18,hg002_chrY_paternal_21.9,hg002_chrY_paternal_21.17;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000021;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000021;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:NA12877_ch_T0000021:1;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1093820	1102883	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.10,hg002_chrY_paternal_21.14,hg002_chrY_paternal_21.15,hg002_chrY_paternal_21.11,hg002_chrY_paternal_21.1,hg002_chrY_paternal_21.18,hg002_chrY_paternal_21.9,hg002_chrY_paternal_21.17;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000021;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000021;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:NA12877_ch_T0000021:1;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1102884	1103038	.	-	.	source_transcript=hg002_chrY_paternal_21.16;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.16;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.16;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.10,hg002_chrY_paternal_21.14,hg002_chrY_paternal_21.15,hg002_chrY_paternal_21.11,hg002_chrY_paternal_21.1,hg002_chrY_paternal_21.18,hg002_chrY_paternal_21.9,hg002_chrY_paternal_21.17;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000021;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000021;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:NA12877_ch_T0000021:2;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1090805	1103038	1000	-	.	source_transcript=hg002_chrY_paternal_21.12;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.12;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.12;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.4;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000022;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_G0000008;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=NA12877_ch_T0000022;Name=LOC101928032
NA12877_chrY	CAT	exon	1090805	1090873	.	-	.	source_transcript=hg002_chrY_paternal_21.12;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.12;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.12;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.4;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000022;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000022;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:NA12877_ch_T0000022:0;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1090874	1093667	.	-	.	source_transcript=hg002_chrY_paternal_21.12;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.12;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.12;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.4;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000022;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000022;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:NA12877_ch_T0000022:0;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1093668	1093819	.	-	.	source_transcript=hg002_chrY_paternal_21.12;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.12;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.12;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.4;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000022;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000022;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:NA12877_ch_T0000022:1;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1093820	1102883	.	-	.	source_transcript=hg002_chrY_paternal_21.12;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.12;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.12;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.4;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000022;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000022;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:NA12877_ch_T0000022:1;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1102884	1103038	.	-	.	source_transcript=hg002_chrY_paternal_21.12;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.12;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.12;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;alternative_source_transcripts=hg002_chrY_paternal_21.4;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000022;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000022;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:NA12877_ch_T0000022:2;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1090805	1103038	1000	-	.	source_transcript=hg002_chrY_paternal_21.5;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.5;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000023;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_G0000008;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=NA12877_ch_T0000023;Name=LOC101928032
NA12877_chrY	CAT	exon	1090805	1090873	.	-	.	source_transcript=hg002_chrY_paternal_21.5;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.5;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000023;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000023;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:NA12877_ch_T0000023:0;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1090874	1093680	.	-	.	source_transcript=hg002_chrY_paternal_21.5;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.5;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000023;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000023;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:NA12877_ch_T0000023:0;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1093681	1093819	.	-	.	source_transcript=hg002_chrY_paternal_21.5;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.5;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000023;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000023;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:NA12877_ch_T0000023:1;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1093820	1102883	.	-	.	source_transcript=hg002_chrY_paternal_21.5;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.5;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000023;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000023;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=intron:NA12877_ch_T0000023:1;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1102884	1103038	.	-	.	source_transcript=hg002_chrY_paternal_21.5;source_transcript_name=hg002_chrY_paternal_21.1;source_gene=hg002_chrY_paternal_21;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_21;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_21.5;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_21.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928032;AdditionalSources=transMap;transcript_id=NA12877_ch_T0000023;gene_id=NA12877_ch_G0000008;Parent=NA12877_ch_T0000023;transcript_name=hg002_chrY_paternal_21.1;gene_name=LOC101928032;ID=exon:NA12877_ch_T0000023:2;Name=LOC101928032;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1103221	1107252	.	+	.	source_gene_common_name=IL3RA;source_gene=hg002_chrY_paternal_20;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.7;gene_id=NA12877_ch_G0000009;gene_biotype=protein_coding;gene_name=IL3RA;gene_sources=liftoff,augTM,transMap;ID=NA12877_ch_G0000009;Name=IL3RA
NA12877_chrY	CAT	transcript	1103221	1107252	9640	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=141.595;frameshift=False;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000024;gene_id=NA12877_ch_G0000009;Parent=NA12877_ch_G0000009;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=NA12877_ch_T0000024;Name=IL3RA
NA12877_chrY	CAT	exon	1103221	1103326	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=141.595;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000024;gene_id=NA12877_ch_G0000009;Parent=NA12877_ch_T0000024;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:NA12877_ch_T0000024:0;Name=IL3RA;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1103221	1103326	.	+	2	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=141.595;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000024;gene_id=NA12877_ch_G0000009;Parent=NA12877_ch_T0000024;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:NA12877_ch_T0000024:0;Name=IL3RA;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1103327	1105584	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=141.595;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000024;gene_id=NA12877_ch_G0000009;Parent=NA12877_ch_T0000024;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:NA12877_ch_T0000024:0;Name=IL3RA;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1105585	1105666	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=141.595;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000024;gene_id=NA12877_ch_G0000009;Parent=NA12877_ch_T0000024;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:NA12877_ch_T0000024:1;Name=IL3RA;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1105585	1105666	.	+	1	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=141.595;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000024;gene_id=NA12877_ch_G0000009;Parent=NA12877_ch_T0000024;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:NA12877_ch_T0000024:1;Name=IL3RA;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1105667	1106952	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=141.595;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000024;gene_id=NA12877_ch_G0000009;Parent=NA12877_ch_T0000024;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=intron:NA12877_ch_T0000024:1;Name=IL3RA;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1106953	1107252	.	+	.	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=141.595;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000024;gene_id=NA12877_ch_G0000009;Parent=NA12877_ch_T0000024;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=exon:NA12877_ch_T0000024:2;Name=IL3RA;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1106953	1107027	.	+	0	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=141.595;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000024;gene_id=NA12877_ch_G0000009;Parent=NA12877_ch_T0000024;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=CDS:NA12877_ch_T0000024:2;Name=IL3RA;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1107025	1107027	.	+	0	source_transcript=hg002_chrY_paternal_20.1;source_transcript_name=hg002_chrY_paternal_20.7;source_gene=hg002_chrY_paternal_20;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_20;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_20.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_20.1;transcript_score=141.595;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=hg002_chrY_paternal_20.2,hg002_chrY_paternal_20.3,hg002_chrY_paternal_20.4,hg002_chrY_paternal_20.5,hg002_chrY_paternal_20.6,hg002_chrY_paternal_20.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000024;gene_id=NA12877_ch_G0000009;Parent=NA12877_ch_T0000024;transcript_name=hg002_chrY_paternal_20.7;gene_name=IL3RA;ID=stop_codon:NA12877_ch_T0000024;Name=IL3RA;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1110715	1116676	.	-	.	source_gene_common_name=SLC25A6;source_gene=hg002_chrY_paternal_22;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;gene_id=NA12877_ch_G0000010;gene_biotype=protein_coding;gene_name=SLC25A6;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000010;Name=SLC25A6
NA12877_chrY	CAT	transcript	1110715	1116676	100	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_G0000010;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=NA12877_ch_T0000025;Name=SLC25A6
NA12877_chrY	CAT	exon	1110715	1111322	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_T0000025;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=exon:NA12877_ch_T0000025:0;Name=SLC25A6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1111165	1111322	.	-	2	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_T0000025;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=CDS:NA12877_ch_T0000025:0;Name=SLC25A6;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1111165	1111167	.	-	0	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_T0000025;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=stop_codon:NA12877_ch_T0000025;Name=SLC25A6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1111323	1111841	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_T0000025;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=intron:NA12877_ch_T0000025:0;Name=SLC25A6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1111842	1111982	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_T0000025;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=exon:NA12877_ch_T0000025:1;Name=SLC25A6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1111842	1111982	.	-	2	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_T0000025;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=CDS:NA12877_ch_T0000025:1;Name=SLC25A6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1111983	1113803	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_T0000025;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=intron:NA12877_ch_T0000025:1;Name=SLC25A6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1113804	1114290	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_T0000025;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=exon:NA12877_ch_T0000025:2;Name=SLC25A6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1113804	1114290	.	-	0	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_T0000025;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=CDS:NA12877_ch_T0000025:2;Name=SLC25A6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1114291	1116461	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_T0000025;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=intron:NA12877_ch_T0000025:2;Name=SLC25A6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1116462	1116676	.	-	.	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_T0000025;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=exon:NA12877_ch_T0000025:3;Name=SLC25A6;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1116462	1116572	.	-	0	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_T0000025;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=CDS:NA12877_ch_T0000025:3;Name=SLC25A6;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1116570	1116572	.	-	0	source_transcript=hg002_chrY_paternal_22.1;source_transcript_name=hg002_chrY_paternal_22.1;source_gene=hg002_chrY_paternal_22;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_22;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_22.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_22.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=hg002_chrY_paternal_22.1,hg002_chrY_paternal_22.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000025;gene_id=NA12877_ch_G0000010;Parent=NA12877_ch_T0000025;transcript_name=hg002_chrY_paternal_22.1;gene_name=SLC25A6;ID=start_codon:NA12877_ch_T0000025;Name=SLC25A6;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1116556	1121447	.	+	.	source_gene_common_name=LOC105373102;source_gene=hg002_chrY_paternal_23;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;gene_id=NA12877_ch_G0000011;gene_biotype=protein_coding;gene_name=LOC105373102;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000011;Name=LOC105373102
NA12877_chrY	CAT	transcript	1116556	1121447	100	+	.	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000026;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_G0000011;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=NA12877_ch_T0000026;Name=LOC105373102
NA12877_chrY	CAT	exon	1116556	1116904	.	+	.	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000026;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000026;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=exon:NA12877_ch_T0000026:0;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1116556	1116904	.	+	0	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000026;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000026;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=CDS:NA12877_ch_T0000026:0;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1116556	1116558	.	+	0	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000026;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000026;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=start_codon:NA12877_ch_T0000026;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1116905	1119695	.	+	.	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000026;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000026;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=intron:NA12877_ch_T0000026:0;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1119696	1120114	.	+	.	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000026;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000026;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=exon:NA12877_ch_T0000026:1;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1119696	1120114	.	+	2	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000026;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000026;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=CDS:NA12877_ch_T0000026:1;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1120115	1120937	.	+	.	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000026;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000026;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=intron:NA12877_ch_T0000026:1;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1120938	1121447	.	+	.	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000026;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000026;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=exon:NA12877_ch_T0000026:2;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1120938	1120958	.	+	0	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000026;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000026;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=CDS:NA12877_ch_T0000026:2;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1120956	1120958	.	+	0	source_transcript=hg002_chrY_paternal_23.1;source_transcript_name=hg002_chrY_paternal_23.2;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_23.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.1,hg002_chrY_paternal_23.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000026;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000026;transcript_name=hg002_chrY_paternal_23.2;gene_name=LOC105373102;ID=stop_codon:NA12877_ch_T0000026;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1116556	1121447	1000	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000027;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_G0000011;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=NA12877_ch_T0000027;Name=LOC105373102
NA12877_chrY	CAT	exon	1116556	1116904	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000027;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000027;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=exon:NA12877_ch_T0000027:0;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1116905	1119695	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000027;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000027;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=intron:NA12877_ch_T0000027:0;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1119696	1120114	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000027;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000027;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=exon:NA12877_ch_T0000027:1;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1120115	1120937	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000027;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000027;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=intron:NA12877_ch_T0000027:1;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1120938	1121081	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000027;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000027;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=exon:NA12877_ch_T0000027:2;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1121082	1121175	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000027;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000027;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=intron:NA12877_ch_T0000027:2;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1121176	1121447	.	+	.	source_transcript=hg002_chrY_paternal_23.2;source_transcript_name=hg002_chrY_paternal_23.1;source_gene=hg002_chrY_paternal_23;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_23;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_23.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_23.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105373102;alternative_source_transcripts=hg002_chrY_paternal_23.2,hg002_chrY_paternal_23.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000027;gene_id=NA12877_ch_G0000011;Parent=NA12877_ch_T0000027;transcript_name=hg002_chrY_paternal_23.1;gene_name=LOC105373102;ID=exon:NA12877_ch_T0000027:3;Name=LOC105373102;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1121591	1123978	.	+	.	source_gene_common_name=LINC00106;source_gene=hg002_chrY_paternal_24;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;gene_id=NA12877_ch_G0000012;gene_biotype=lncRNA;gene_name=LINC00106;gene_sources=liftoff;ID=NA12877_ch_G0000012;Name=LINC00106
NA12877_chrY	CAT	transcript	1121591	1123978	1000	+	.	source_transcript=hg002_chrY_paternal_24.1;source_transcript_name=hg002_chrY_paternal_24.1;source_gene=hg002_chrY_paternal_24;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_24;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_24.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_24.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;transcript_id=NA12877_ch_T0000028;gene_id=NA12877_ch_G0000012;Parent=NA12877_ch_G0000012;transcript_name=hg002_chrY_paternal_24.1;gene_name=LINC00106;ID=NA12877_ch_T0000028;Name=LINC00106
NA12877_chrY	CAT	exon	1121591	1121790	.	+	.	source_transcript=hg002_chrY_paternal_24.1;source_transcript_name=hg002_chrY_paternal_24.1;source_gene=hg002_chrY_paternal_24;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_24;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_24.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_24.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;transcript_id=NA12877_ch_T0000028;gene_id=NA12877_ch_G0000012;Parent=NA12877_ch_T0000028;transcript_name=hg002_chrY_paternal_24.1;gene_name=LINC00106;ID=exon:NA12877_ch_T0000028:0;Name=LINC00106;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1121791	1123390	.	+	.	source_transcript=hg002_chrY_paternal_24.1;source_transcript_name=hg002_chrY_paternal_24.1;source_gene=hg002_chrY_paternal_24;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_24;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_24.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_24.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;transcript_id=NA12877_ch_T0000028;gene_id=NA12877_ch_G0000012;Parent=NA12877_ch_T0000028;transcript_name=hg002_chrY_paternal_24.1;gene_name=LINC00106;ID=intron:NA12877_ch_T0000028:0;Name=LINC00106;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1123391	1123524	.	+	.	source_transcript=hg002_chrY_paternal_24.1;source_transcript_name=hg002_chrY_paternal_24.1;source_gene=hg002_chrY_paternal_24;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_24;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_24.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_24.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;transcript_id=NA12877_ch_T0000028;gene_id=NA12877_ch_G0000012;Parent=NA12877_ch_T0000028;transcript_name=hg002_chrY_paternal_24.1;gene_name=LINC00106;ID=exon:NA12877_ch_T0000028:1;Name=LINC00106;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1123525	1123932	.	+	.	source_transcript=hg002_chrY_paternal_24.1;source_transcript_name=hg002_chrY_paternal_24.1;source_gene=hg002_chrY_paternal_24;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_24;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_24.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_24.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;transcript_id=NA12877_ch_T0000028;gene_id=NA12877_ch_G0000012;Parent=NA12877_ch_T0000028;transcript_name=hg002_chrY_paternal_24.1;gene_name=LINC00106;ID=intron:NA12877_ch_T0000028:1;Name=LINC00106;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1123933	1123978	.	+	.	source_transcript=hg002_chrY_paternal_24.1;source_transcript_name=hg002_chrY_paternal_24.1;source_gene=hg002_chrY_paternal_24;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_24;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_24.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_24.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=hg002_chrY_paternal_24.1,hg002_chrY_paternal_24.1;transcript_id=NA12877_ch_T0000028;gene_id=NA12877_ch_G0000012;Parent=NA12877_ch_T0000028;transcript_name=hg002_chrY_paternal_24.1;gene_name=LINC00106;ID=exon:NA12877_ch_T0000028:2;Name=LINC00106;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1125095	1138168	.	+	.	source_gene_common_name=ASMTL-AS1;source_gene=hg002_chrY_paternal_25;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;gene_id=NA12877_ch_G0000013;gene_biotype=lncRNA;gene_name=ASMTL-AS1;gene_sources=liftoff;ID=NA12877_ch_G0000013;Name=ASMTL-AS1
NA12877_chrY	CAT	transcript	1125095	1136311	1000	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=NA12877_ch_T0000029;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_G0000013;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=NA12877_ch_T0000029;Name=ASMTL-AS1
NA12877_chrY	CAT	exon	1125095	1125150	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=NA12877_ch_T0000029;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000029;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:NA12877_ch_T0000029:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1125151	1126025	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=NA12877_ch_T0000029;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000029;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:NA12877_ch_T0000029:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1126026	1126789	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=NA12877_ch_T0000029;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000029;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:NA12877_ch_T0000029:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1126790	1127946	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=NA12877_ch_T0000029;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000029;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:NA12877_ch_T0000029:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1127947	1128071	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=NA12877_ch_T0000029;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000029;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:NA12877_ch_T0000029:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1128072	1135464	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=NA12877_ch_T0000029;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000029;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:NA12877_ch_T0000029:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1135465	1136311	.	+	.	source_transcript=hg002_chrY_paternal_25.1;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.1,hg002_chrY_paternal_25.1;transcript_id=NA12877_ch_T0000029;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000029;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:NA12877_ch_T0000029:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1125095	1138168	1000	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=NA12877_ch_T0000030;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_G0000013;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=NA12877_ch_T0000030;Name=ASMTL-AS1
NA12877_chrY	CAT	exon	1125095	1125150	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=NA12877_ch_T0000030;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000030;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:NA12877_ch_T0000030:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1125151	1126025	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=NA12877_ch_T0000030;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000030;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:NA12877_ch_T0000030:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1126026	1126789	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=NA12877_ch_T0000030;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000030;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:NA12877_ch_T0000030:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1126790	1127946	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=NA12877_ch_T0000030;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000030;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:NA12877_ch_T0000030:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1127947	1128071	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=NA12877_ch_T0000030;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000030;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:NA12877_ch_T0000030:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1128072	1135464	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=NA12877_ch_T0000030;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000030;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:NA12877_ch_T0000030:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1135465	1135610	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=NA12877_ch_T0000030;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000030;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:NA12877_ch_T0000030:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1135611	1136486	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=NA12877_ch_T0000030;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000030;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:NA12877_ch_T0000030:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1136487	1137035	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=NA12877_ch_T0000030;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000030;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:NA12877_ch_T0000030:4;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1137036	1137467	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=NA12877_ch_T0000030;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000030;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=intron:NA12877_ch_T0000030:4;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1137468	1138168	.	+	.	source_transcript=hg002_chrY_paternal_25.2;source_transcript_name=hg002_chrY_paternal_25.1;source_gene=hg002_chrY_paternal_25;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_25;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_25.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_25.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=hg002_chrY_paternal_25.2,hg002_chrY_paternal_25.2;transcript_id=NA12877_ch_T0000030;gene_id=NA12877_ch_G0000013;Parent=NA12877_ch_T0000030;transcript_name=hg002_chrY_paternal_25.1;gene_name=ASMTL-AS1;ID=exon:NA12877_ch_T0000030:5;Name=ASMTL-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1127625	1176925	.	-	.	source_gene_common_name=ASMTL;source_gene=hg002_chrY_paternal_26;alternative_source_transcripts=hg002_chrY_paternal_26.6;gene_id=NA12877_ch_G0000014;gene_biotype=protein_coding;gene_name=ASMTL;gene_sources=liftoff,augTM,transMap;ID=NA12877_ch_G0000014;Name=ASMTL
NA12877_chrY	CAT	transcript	1127625	1176925	9900	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;frameshift=True;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_G0000014;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=NA12877_ch_T0000031;Name=ASMTL
NA12877_chrY	CAT	exon	1127625	1127975	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000031:0;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1127755	1127975	.	-	2	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000031:0;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1127755	1127757	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=stop_codon:NA12877_ch_T0000031;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1127976	1135453	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000031:0;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1135454	1135576	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000031:1;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1135454	1135576	.	-	2	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000031:1;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1135577	1140686	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000031:1;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1140687	1140830	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000031:2;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1140687	1140830	.	-	2	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000031:2;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1140831	1141695	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000031:2;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1141696	1141828	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000031:3;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1141696	1141828	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000031:3;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1141829	1144371	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000031:3;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1144372	1144556	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000031:4;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1144372	1144556	.	-	2	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000031:4;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1144557	1148191	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000031:4;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1148192	1148354	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000031:5;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1148192	1148354	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000031:5;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1148355	1150404	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000031:5;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1150405	1150792	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000031:6;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1150405	1150792	.	-	1	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000031:6;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1150793	1154962	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000031:6;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1154963	1155071	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000031:7;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1154963	1155071	.	-	2	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000031:7;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1155072	1157985	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000031:7;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1157986	1158047	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000031:8;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1157986	1158047	.	-	1	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000031:8;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1158048	1158657	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000031:8;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1158658	1158722	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000031:9;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1158658	1158722	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000031:9;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1158723	1162060	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000031:9;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1162061	1162108	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000031:10;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1162061	1162108	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000031:10;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1162109	1165149	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000031:10;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1165150	1165281	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000031:11;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1165150	1165200	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000031:11;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1165198	1165200	.	-	0	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=start_codon:NA12877_ch_T0000031;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1165282	1176748	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000031:11;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1176749	1176925	.	-	.	source_transcript=hg002_chrY_paternal_26.6;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.6;transcript_score=299.527;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000031;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000031;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000031:12;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1127625	1176925	9900	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;frameshift=True;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_G0000014;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=NA12877_ch_T0000032;Name=ASMTL
NA12877_chrY	CAT	exon	1127625	1127975	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:0;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1127755	1127975	.	-	2	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000032:0;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1127755	1127757	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=stop_codon:NA12877_ch_T0000032;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1127976	1135453	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000032:0;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1135454	1135576	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:1;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1135454	1135576	.	-	2	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000032:1;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1135577	1140686	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000032:1;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1140687	1140830	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:2;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1140687	1140830	.	-	2	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000032:2;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1140831	1141695	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000032:2;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1141696	1141828	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:3;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1141696	1141828	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000032:3;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1141829	1144371	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000032:3;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1144372	1144556	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:4;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1144372	1144556	.	-	2	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000032:4;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1144557	1148191	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000032:4;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1148192	1148354	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:5;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1148192	1148354	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000032:5;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1148355	1150404	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000032:5;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1150405	1150792	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:6;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1150405	1150792	.	-	1	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000032:6;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1150793	1154962	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000032:6;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1154963	1155071	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:7;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1154963	1155071	.	-	2	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000032:7;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1155072	1157985	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000032:7;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1157986	1158047	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:8;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1157986	1158047	.	-	1	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000032:8;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1158048	1158657	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000032:8;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1158658	1158722	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:9;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1158658	1158722	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000032:9;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1158723	1162060	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000032:9;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1162061	1162108	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:10;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1162061	1162108	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000032:10;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1162109	1165149	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000032:10;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1165150	1165281	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:11;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1165150	1165281	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000032:11;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1165282	1175878	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000032:11;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1175879	1176037	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:12;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1175879	1175971	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000032:12;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1175969	1175971	.	-	0	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=start_codon:NA12877_ch_T0000032;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1176038	1176748	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000032:12;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1176749	1176925	.	-	.	source_transcript=hg002_chrY_paternal_26.7;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.7;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000032;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000032;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000032:13;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1127625	1176925	9900	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;frameshift=True;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_G0000014;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=NA12877_ch_T0000033;Name=ASMTL
NA12877_chrY	CAT	exon	1127625	1127975	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000033:0;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1127755	1127975	.	-	2	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000033:0;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1127755	1127757	.	-	0	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=stop_codon:NA12877_ch_T0000033;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1127976	1135453	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000033:0;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1135454	1135576	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000033:1;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1135454	1135576	.	-	2	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000033:1;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1135577	1140686	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000033:1;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1140687	1140830	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000033:2;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1140687	1140830	.	-	2	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000033:2;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1140831	1141695	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000033:2;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1141696	1141828	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000033:3;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1141696	1141828	.	-	0	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000033:3;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1141829	1144371	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000033:3;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1144372	1144556	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000033:4;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1144372	1144556	.	-	2	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000033:4;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1144557	1148191	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000033:4;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1148192	1148354	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000033:5;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1148192	1148354	.	-	0	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000033:5;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1148355	1150404	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000033:5;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1150405	1150792	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000033:6;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1150405	1150792	.	-	1	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000033:6;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1150793	1154962	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000033:6;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1154963	1155071	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000033:7;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1154963	1155071	.	-	2	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000033:7;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1155072	1157985	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000033:7;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1157986	1158047	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000033:8;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1157986	1158047	.	-	1	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000033:8;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1158048	1162060	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000033:8;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1162061	1162108	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000033:9;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1162061	1162108	.	-	1	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000033:9;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1162109	1165149	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000033:9;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1165150	1165281	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000033:10;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1165150	1165211	.	-	0	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=CDS:NA12877_ch_T0000033:10;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1165209	1165211	.	-	0	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=start_codon:NA12877_ch_T0000033;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1165282	1176748	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=intron:NA12877_ch_T0000033:10;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1176749	1176925	.	-	.	source_transcript=hg002_chrY_paternal_26.8;source_transcript_name=hg002_chrY_paternal_26.8;source_gene=hg002_chrY_paternal_26;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_26;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_26.8;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_26.8;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=hg002_chrY_paternal_26.8;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000033;gene_id=NA12877_ch_G0000014;Parent=NA12877_ch_T0000033;transcript_name=hg002_chrY_paternal_26.8;gene_name=ASMTL;ID=exon:NA12877_ch_T0000033:11;Name=ASMTL;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1185999	1260206	.	-	.	source_gene_common_name=P2RY8;source_gene=hg002_chrY_paternal_27;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;gene_id=NA12877_ch_G0000015;gene_biotype=protein_coding;gene_name=P2RY8;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000015;Name=P2RY8
NA12877_chrY	CAT	transcript	1185999	1191140	100	-	.	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000034;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_G0000015;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=NA12877_ch_T0000034;Name=P2RY8
NA12877_chrY	CAT	exon	1185999	1190000	.	-	.	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000034;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000034;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:NA12877_ch_T0000034:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1188897	1189976	.	-	0	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000034;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000034;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=CDS:NA12877_ch_T0000034:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1188897	1188899	.	-	0	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000034;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000034;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=stop_codon:NA12877_ch_T0000034;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1189974	1189976	.	-	0	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000034;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000034;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=start_codon:NA12877_ch_T0000034;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1190001	1190448	.	-	.	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000034;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000034;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=intron:NA12877_ch_T0000034:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1190449	1191140	.	-	.	source_transcript=hg002_chrY_paternal_27.1;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.1,hg002_chrY_paternal_27.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000034;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000034;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:NA12877_ch_T0000034:1;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1185999	1216557	100	-	.	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000035;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_G0000015;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=NA12877_ch_T0000035;Name=P2RY8
NA12877_chrY	CAT	exon	1185999	1190000	.	-	.	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000035;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000035;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:NA12877_ch_T0000035:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1188897	1189976	.	-	0	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000035;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000035;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=CDS:NA12877_ch_T0000035:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1188897	1188899	.	-	0	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000035;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000035;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=stop_codon:NA12877_ch_T0000035;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1189974	1189976	.	-	0	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000035;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000035;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=start_codon:NA12877_ch_T0000035;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1190001	1216502	.	-	.	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000035;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000035;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=intron:NA12877_ch_T0000035:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1216503	1216557	.	-	.	source_transcript=hg002_chrY_paternal_27.2;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.2,hg002_chrY_paternal_27.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000035;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000035;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:NA12877_ch_T0000035:1;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1185999	1218188	100	-	.	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000036;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_G0000015;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=NA12877_ch_T0000036;Name=P2RY8
NA12877_chrY	CAT	exon	1185999	1190000	.	-	.	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000036;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000036;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:NA12877_ch_T0000036:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1188897	1189976	.	-	0	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000036;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000036;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=CDS:NA12877_ch_T0000036:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1188897	1188899	.	-	0	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000036;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000036;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=stop_codon:NA12877_ch_T0000036;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1189974	1189976	.	-	0	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000036;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000036;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=start_codon:NA12877_ch_T0000036;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1190001	1217571	.	-	.	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000036;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000036;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=intron:NA12877_ch_T0000036:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1217572	1218188	.	-	.	source_transcript=hg002_chrY_paternal_27.3;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.3,hg002_chrY_paternal_27.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000036;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000036;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:NA12877_ch_T0000036:1;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1185999	1260206	100	-	.	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000037;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_G0000015;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=NA12877_ch_T0000037;Name=P2RY8
NA12877_chrY	CAT	exon	1185999	1190000	.	-	.	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000037;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000037;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:NA12877_ch_T0000037:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1188897	1189976	.	-	0	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000037;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000037;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=CDS:NA12877_ch_T0000037:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1188897	1188899	.	-	0	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000037;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000037;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=stop_codon:NA12877_ch_T0000037;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1189974	1189976	.	-	0	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000037;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000037;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=start_codon:NA12877_ch_T0000037;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1190001	1259941	.	-	.	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000037;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000037;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=intron:NA12877_ch_T0000037:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1259942	1260206	.	-	.	source_transcript=hg002_chrY_paternal_27.4;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.4,hg002_chrY_paternal_27.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000037;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000037;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:NA12877_ch_T0000037:1;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1185999	1260206	100	-	.	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000038;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_G0000015;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=NA12877_ch_T0000038;Name=P2RY8
NA12877_chrY	CAT	exon	1185999	1190000	.	-	.	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000038;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000038;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:NA12877_ch_T0000038:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1188897	1189976	.	-	0	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000038;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000038;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=CDS:NA12877_ch_T0000038:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1188897	1188899	.	-	0	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000038;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000038;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=stop_codon:NA12877_ch_T0000038;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1189974	1189976	.	-	0	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000038;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000038;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=start_codon:NA12877_ch_T0000038;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1190001	1191919	.	-	.	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000038;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000038;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=intron:NA12877_ch_T0000038:0;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1191920	1192088	.	-	.	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000038;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000038;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:NA12877_ch_T0000038:1;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1192089	1259941	.	-	.	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000038;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000038;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=intron:NA12877_ch_T0000038:1;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1259942	1260206	.	-	.	source_transcript=hg002_chrY_paternal_27.5;source_transcript_name=hg002_chrY_paternal_27.5;source_gene=hg002_chrY_paternal_27;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_27;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_27.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_27.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=hg002_chrY_paternal_27.5,hg002_chrY_paternal_27.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000038;gene_id=NA12877_ch_G0000015;Parent=NA12877_ch_T0000038;transcript_name=hg002_chrY_paternal_27.5;gene_name=P2RY8;ID=exon:NA12877_ch_T0000038:2;Name=P2RY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1314580	1325356	.	+	.	source_gene_common_name=AKAP17A;source_gene=hg002_chrY_paternal_28;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;gene_id=NA12877_ch_G0000016;gene_biotype=protein_coding;gene_name=AKAP17A;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000016;Name=AKAP17A
NA12877_chrY	CAT	transcript	1314580	1325356	100	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_G0000016;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=NA12877_ch_T0000039;Name=AKAP17A
NA12877_chrY	CAT	exon	1314580	1314745	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=exon:NA12877_ch_T0000039:0;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1314746	1316419	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=intron:NA12877_ch_T0000039:0;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1316420	1317200	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=exon:NA12877_ch_T0000039:1;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1316439	1317200	.	+	0	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=CDS:NA12877_ch_T0000039:0;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1316439	1316441	.	+	0	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=start_codon:NA12877_ch_T0000039;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1317201	1318331	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=intron:NA12877_ch_T0000039:1;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1318332	1318480	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=exon:NA12877_ch_T0000039:2;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1318332	1318480	.	+	0	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=CDS:NA12877_ch_T0000039:1;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1318481	1322027	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=intron:NA12877_ch_T0000039:2;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1322028	1322268	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=exon:NA12877_ch_T0000039:3;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1322028	1322268	.	+	1	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=CDS:NA12877_ch_T0000039:2;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1322269	1323494	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=intron:NA12877_ch_T0000039:3;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1323495	1325356	.	+	.	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=exon:NA12877_ch_T0000039:4;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1323495	1324430	.	+	0	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=CDS:NA12877_ch_T0000039:3;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1324428	1324430	.	+	0	source_transcript=hg002_chrY_paternal_28.1;source_transcript_name=hg002_chrY_paternal_28.2;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_28.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.1,hg002_chrY_paternal_28.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000039;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000039;transcript_name=hg002_chrY_paternal_28.2;gene_name=AKAP17A;ID=stop_codon:NA12877_ch_T0000039;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1314580	1325356	1000	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000040;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_G0000016;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=NA12877_ch_T0000040;Name=AKAP17A
NA12877_chrY	CAT	exon	1314580	1314745	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000040;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000040;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=exon:NA12877_ch_T0000040:0;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1314746	1316419	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000040;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000040;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=intron:NA12877_ch_T0000040:0;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1316420	1317200	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000040;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000040;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=exon:NA12877_ch_T0000040:1;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1317201	1318331	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000040;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000040;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=intron:NA12877_ch_T0000040:1;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1318332	1318480	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000040;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000040;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=exon:NA12877_ch_T0000040:2;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1318481	1322027	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000040;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000040;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=intron:NA12877_ch_T0000040:2;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1322028	1322268	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000040;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000040;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=exon:NA12877_ch_T0000040:3;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1322269	1322973	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000040;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000040;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=intron:NA12877_ch_T0000040:3;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1322974	1323043	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000040;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000040;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=exon:NA12877_ch_T0000040:4;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1323044	1323494	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000040;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000040;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=intron:NA12877_ch_T0000040:4;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1323495	1325356	.	+	.	source_transcript=hg002_chrY_paternal_28.2;source_transcript_name=hg002_chrY_paternal_28.1;source_gene=hg002_chrY_paternal_28;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_28;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_28.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_28.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=hg002_chrY_paternal_28.2,hg002_chrY_paternal_28.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000040;gene_id=NA12877_ch_G0000016;Parent=NA12877_ch_T0000040;transcript_name=hg002_chrY_paternal_28.1;gene_name=AKAP17A;ID=exon:NA12877_ch_T0000040:5;Name=AKAP17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1318403	1362401	.	+	.	source_gene_common_name=ASMT;source_gene=hg002_chrY_paternal_29;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;gene_id=NA12877_ch_G0000017;gene_biotype=protein_coding;gene_name=ASMT;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000017;Name=ASMT
NA12877_chrY	CAT	transcript	1318403	1362401	100	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_G0000017;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=NA12877_ch_T0000041;Name=ASMT
NA12877_chrY	CAT	exon	1318403	1318480	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000041:0;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1318481	1337589	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000041:0;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1337590	1337725	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000041:1;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1337657	1337725	.	+	0	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000041:0;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1337657	1337659	.	+	0	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=start_codon:NA12877_ch_T0000041;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1337726	1345590	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000041:1;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1345591	1345765	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000041:2;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1345591	1345765	.	+	0	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000041:1;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1345766	1346720	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000041:2;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1346721	1346850	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000041:3;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1346721	1346850	.	+	2	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000041:2;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1346851	1350154	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000041:3;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1350155	1350223	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000041:4;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1350155	1350223	.	+	1	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000041:3;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1350224	1352263	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000041:4;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1352264	1352382	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000041:5;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1352264	1352382	.	+	1	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000041:4;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1352383	1355152	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000041:5;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1355153	1355236	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000041:6;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1355153	1355236	.	+	2	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000041:5;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1355237	1355597	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000041:6;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1355598	1355738	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000041:7;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1355598	1355738	.	+	2	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000041:6;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1355739	1358885	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000041:7;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1358886	1359008	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000041:8;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1358886	1359008	.	+	2	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000041:7;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1359009	1362122	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000041:8;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1362123	1362401	.	+	.	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000041:9;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1362123	1362334	.	+	2	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000041:8;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1362332	1362334	.	+	0	source_transcript=hg002_chrY_paternal_29.1;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.1,hg002_chrY_paternal_29.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000041;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000041;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=stop_codon:NA12877_ch_T0000041;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1337516	1362401	100	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_G0000017;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=NA12877_ch_T0000042;Name=ASMT
NA12877_chrY	CAT	exon	1337516	1337725	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000042:0;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1337657	1337725	.	+	0	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000042:0;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1337657	1337659	.	+	0	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=start_codon:NA12877_ch_T0000042;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1337726	1345590	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000042:0;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1345591	1345765	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000042:1;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1345591	1345765	.	+	0	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000042:1;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1345766	1346720	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000042:1;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1346721	1346850	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000042:2;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1346721	1346850	.	+	2	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000042:2;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1346851	1350154	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000042:2;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1350155	1350223	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000042:3;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1350155	1350223	.	+	1	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000042:3;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1350224	1352263	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000042:3;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1352264	1352382	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000042:4;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1352264	1352382	.	+	1	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000042:4;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1352383	1355152	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000042:4;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1355153	1355236	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000042:5;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1355153	1355236	.	+	2	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000042:5;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1355237	1355597	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000042:5;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1355598	1355738	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000042:6;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1355598	1355738	.	+	2	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000042:6;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1355739	1358885	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000042:6;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1358886	1359008	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000042:7;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1358886	1359008	.	+	2	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000042:7;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1359009	1362122	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000042:7;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1362123	1362401	.	+	.	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000042:8;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1362123	1362334	.	+	2	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000042:8;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1362332	1362334	.	+	0	source_transcript=hg002_chrY_paternal_29.2;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.2,hg002_chrY_paternal_29.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000042;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000042;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=stop_codon:NA12877_ch_T0000042;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1337590	1362401	100	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_G0000017;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=NA12877_ch_T0000043;Name=ASMT
NA12877_chrY	CAT	exon	1337590	1337725	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000043:0;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1337657	1337725	.	+	0	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000043:0;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	1337657	1337659	.	+	0	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=start_codon:NA12877_ch_T0000043;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1337726	1345590	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000043:0;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1345591	1345765	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000043:1;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1345591	1345765	.	+	0	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000043:1;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1345766	1346720	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000043:1;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1346721	1346850	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000043:2;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1346721	1346850	.	+	2	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000043:2;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1346851	1350154	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000043:2;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1350155	1350223	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000043:3;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1350155	1350223	.	+	1	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000043:3;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1350224	1352263	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000043:3;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1352264	1352382	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000043:4;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1352264	1352382	.	+	1	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000043:4;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1352383	1358885	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000043:4;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1358886	1359008	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000043:5;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1358886	1359008	.	+	2	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000043:5;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1359009	1362122	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=intron:NA12877_ch_T0000043:5;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1362123	1362401	.	+	.	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=exon:NA12877_ch_T0000043:6;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1362123	1362334	.	+	2	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=CDS:NA12877_ch_T0000043:6;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1362332	1362334	.	+	0	source_transcript=hg002_chrY_paternal_29.3;source_transcript_name=hg002_chrY_paternal_29.3;source_gene=hg002_chrY_paternal_29;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_29;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_29.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_29.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=hg002_chrY_paternal_29.3,hg002_chrY_paternal_29.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000043;gene_id=NA12877_ch_G0000017;Parent=NA12877_ch_T0000043;transcript_name=hg002_chrY_paternal_29.3;gene_name=ASMT;ID=stop_codon:NA12877_ch_T0000043;Name=ASMT;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1450833	1474222	.	+	.	source_gene_common_name=LINC02968;source_gene=hg002_chrY_paternal_30;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;gene_id=NA12877_ch_G0000018;gene_biotype=lncRNA;gene_name=LINC02968;gene_sources=liftoff;ID=NA12877_ch_G0000018;Name=LINC02968
NA12877_chrY	CAT	transcript	1450833	1474222	1000	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_G0000018;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=NA12877_ch_T0000044;Name=LINC02968
NA12877_chrY	CAT	exon	1450833	1451137	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000044;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000044:0;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1451138	1452369	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000044;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000044:0;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1452370	1452613	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000044;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000044:1;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1452614	1461714	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000044;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000044:1;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1461715	1461928	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000044;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000044:2;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1461929	1462021	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000044;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000044:2;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1462022	1462809	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000044;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000044:3;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1462810	1465526	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000044;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000044:3;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1465527	1465780	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000044;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000044:4;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1465781	1469524	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000044;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000044:4;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1469525	1469584	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000044;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000044:5;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1469585	1473921	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000044;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000044:5;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1473922	1474222	.	+	.	source_transcript=hg002_chrY_paternal_30.1;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.1,hg002_chrY_paternal_30.1;transcript_id=NA12877_ch_T0000044;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000044;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000044:6;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1450887	1474222	1000	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_G0000018;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=NA12877_ch_T0000045;Name=LINC02968
NA12877_chrY	CAT	exon	1450887	1451137	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000045:0;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1451138	1452366	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000045:0;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1452367	1452628	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000045:1;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1452629	1460164	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000045:1;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1460165	1460260	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000045:2;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1460261	1461517	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000045:2;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1461518	1461928	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000045:3;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1461929	1462021	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000045:3;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1462022	1462809	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000045:4;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1462810	1465526	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000045:4;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1465527	1465780	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000045:5;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1465781	1469524	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000045:5;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1469525	1469584	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000045:6;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1469585	1473921	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000045:6;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1473922	1474222	.	+	.	source_transcript=hg002_chrY_paternal_30.2;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.2,hg002_chrY_paternal_30.2;transcript_id=NA12877_ch_T0000045;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000045;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000045:7;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1450970	1474222	1000	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_G0000018;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=NA12877_ch_T0000046;Name=LINC02968
NA12877_chrY	CAT	exon	1450970	1451137	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000046:0;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1451138	1452366	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000046:0;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1452367	1452613	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000046:1;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1452614	1460164	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000046:1;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1460165	1460260	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000046:2;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1460261	1461714	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000046:2;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1461715	1461928	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000046:3;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1461929	1462021	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000046:3;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1462022	1462809	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000046:4;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1462810	1465526	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000046:4;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1465527	1465780	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000046:5;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1465781	1469524	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000046:5;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1469525	1469584	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000046:6;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1469585	1473921	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000046:6;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1473922	1474222	.	+	.	source_transcript=hg002_chrY_paternal_30.3;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.3,hg002_chrY_paternal_30.3;transcript_id=NA12877_ch_T0000046;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000046;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000046:7;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1450970	1474222	1000	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_G0000018;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=NA12877_ch_T0000047;Name=LINC02968
NA12877_chrY	CAT	exon	1450970	1451137	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000047:0;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1451138	1452366	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000047:0;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1452367	1452613	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000047:1;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1452614	1460164	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000047:1;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1460165	1460260	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000047:2;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1460261	1461711	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000047:2;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1461712	1461928	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000047:3;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1461929	1462021	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000047:3;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1462022	1462809	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000047:4;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1462810	1465526	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000047:4;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1465527	1465780	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000047:5;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1465781	1469524	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000047:5;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1469525	1469584	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000047:6;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1469585	1473921	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000047:6;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1473922	1474222	.	+	.	source_transcript=hg002_chrY_paternal_30.4;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.4,hg002_chrY_paternal_30.4;transcript_id=NA12877_ch_T0000047;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000047;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000047:7;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1450970	1474222	1000	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_G0000018;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=NA12877_ch_T0000048;Name=LINC02968
NA12877_chrY	CAT	exon	1450970	1451137	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000048:0;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1451138	1452369	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000048:0;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1452370	1452613	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000048:1;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1452614	1460164	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000048:1;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1460165	1460260	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000048:2;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1460261	1461714	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000048:2;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1461715	1461928	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000048:3;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1461929	1462021	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000048:3;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1462022	1462809	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000048:4;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1462810	1465526	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000048:4;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1465527	1465780	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000048:5;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1465781	1469524	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000048:5;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1469525	1469584	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000048:6;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1469585	1473921	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000048:6;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1473922	1474222	.	+	.	source_transcript=hg002_chrY_paternal_30.5;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.5,hg002_chrY_paternal_30.5;transcript_id=NA12877_ch_T0000048;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000048;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000048:7;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1450970	1474222	1000	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_G0000018;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=NA12877_ch_T0000049;Name=LINC02968
NA12877_chrY	CAT	exon	1450970	1451137	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000049:0;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1451138	1452366	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000049:0;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1452367	1452613	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000049:1;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1452614	1460164	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000049:1;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1460165	1460260	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000049:2;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1460261	1461822	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000049:2;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1461823	1461928	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000049:3;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1461929	1462021	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000049:3;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1462022	1462809	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000049:4;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1462810	1465526	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000049:4;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1465527	1465780	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000049:5;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1465781	1469524	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000049:5;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1469525	1469584	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000049:6;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1469585	1473921	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=intron:NA12877_ch_T0000049:6;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1473922	1474222	.	+	.	source_transcript=hg002_chrY_paternal_30.6;source_transcript_name=hg002_chrY_paternal_30.1;source_gene=hg002_chrY_paternal_30;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_30;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_30.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_30.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=hg002_chrY_paternal_30.6,hg002_chrY_paternal_30.6;transcript_id=NA12877_ch_T0000049;gene_id=NA12877_ch_G0000018;Parent=NA12877_ch_T0000049;transcript_name=hg002_chrY_paternal_30.1;gene_name=LINC02968;ID=exon:NA12877_ch_T0000049:7;Name=LINC02968;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1488326	1501835	.	+	.	source_gene_common_name=LOC105379413;source_gene=hg002_chrY_paternal_31;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;gene_id=NA12877_ch_G0000019;gene_biotype=lncRNA;gene_name=LOC105379413;gene_sources=liftoff;ID=NA12877_ch_G0000019;Name=LOC105379413
NA12877_chrY	CAT	transcript	1488326	1501835	1000	+	.	source_transcript=hg002_chrY_paternal_31.1;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;transcript_id=NA12877_ch_T0000050;gene_id=NA12877_ch_G0000019;Parent=NA12877_ch_G0000019;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=NA12877_ch_T0000050;Name=LOC105379413
NA12877_chrY	CAT	exon	1488326	1488902	.	+	.	source_transcript=hg002_chrY_paternal_31.1;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;transcript_id=NA12877_ch_T0000050;gene_id=NA12877_ch_G0000019;Parent=NA12877_ch_T0000050;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=exon:NA12877_ch_T0000050:0;Name=LOC105379413;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1488903	1493564	.	+	.	source_transcript=hg002_chrY_paternal_31.1;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;transcript_id=NA12877_ch_T0000050;gene_id=NA12877_ch_G0000019;Parent=NA12877_ch_T0000050;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=intron:NA12877_ch_T0000050:0;Name=LOC105379413;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1493565	1493778	.	+	.	source_transcript=hg002_chrY_paternal_31.1;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;transcript_id=NA12877_ch_T0000050;gene_id=NA12877_ch_G0000019;Parent=NA12877_ch_T0000050;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=exon:NA12877_ch_T0000050:1;Name=LOC105379413;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1493779	1498705	.	+	.	source_transcript=hg002_chrY_paternal_31.1;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;transcript_id=NA12877_ch_T0000050;gene_id=NA12877_ch_G0000019;Parent=NA12877_ch_T0000050;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=intron:NA12877_ch_T0000050:1;Name=LOC105379413;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1498706	1501835	.	+	.	source_transcript=hg002_chrY_paternal_31.1;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.1,hg002_chrY_paternal_31.1;transcript_id=NA12877_ch_T0000050;gene_id=NA12877_ch_G0000019;Parent=NA12877_ch_T0000050;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=exon:NA12877_ch_T0000050:2;Name=LOC105379413;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	1488326	1501835	1000	+	.	source_transcript=hg002_chrY_paternal_31.2;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.2,hg002_chrY_paternal_31.2;transcript_id=NA12877_ch_T0000051;gene_id=NA12877_ch_G0000019;Parent=NA12877_ch_G0000019;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=NA12877_ch_T0000051;Name=LOC105379413
NA12877_chrY	CAT	exon	1488326	1488902	.	+	.	source_transcript=hg002_chrY_paternal_31.2;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.2,hg002_chrY_paternal_31.2;transcript_id=NA12877_ch_T0000051;gene_id=NA12877_ch_G0000019;Parent=NA12877_ch_T0000051;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=exon:NA12877_ch_T0000051:0;Name=LOC105379413;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1488903	1493564	.	+	.	source_transcript=hg002_chrY_paternal_31.2;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.2,hg002_chrY_paternal_31.2;transcript_id=NA12877_ch_T0000051;gene_id=NA12877_ch_G0000019;Parent=NA12877_ch_T0000051;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=intron:NA12877_ch_T0000051:0;Name=LOC105379413;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1493565	1493727	.	+	.	source_transcript=hg002_chrY_paternal_31.2;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.2,hg002_chrY_paternal_31.2;transcript_id=NA12877_ch_T0000051;gene_id=NA12877_ch_G0000019;Parent=NA12877_ch_T0000051;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=exon:NA12877_ch_T0000051:1;Name=LOC105379413;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1493728	1498705	.	+	.	source_transcript=hg002_chrY_paternal_31.2;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.2,hg002_chrY_paternal_31.2;transcript_id=NA12877_ch_T0000051;gene_id=NA12877_ch_G0000019;Parent=NA12877_ch_T0000051;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=intron:NA12877_ch_T0000051:1;Name=LOC105379413;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1498706	1501835	.	+	.	source_transcript=hg002_chrY_paternal_31.2;source_transcript_name=hg002_chrY_paternal_31.1;source_gene=hg002_chrY_paternal_31;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_31;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_31.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_31.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379413;alternative_source_transcripts=hg002_chrY_paternal_31.2,hg002_chrY_paternal_31.2;transcript_id=NA12877_ch_T0000051;gene_id=NA12877_ch_G0000019;Parent=NA12877_ch_T0000051;transcript_name=hg002_chrY_paternal_31.1;gene_name=LOC105379413;ID=exon:NA12877_ch_T0000051:2;Name=LOC105379413;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1596278	1602586	.	-	.	source_gene_common_name=LOC107985677;source_gene=hg002_chrY_paternal_32;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;gene_id=NA12877_ch_G0000020;gene_biotype=lncRNA;gene_name=LOC107985677;gene_sources=liftoff;ID=NA12877_ch_G0000020;Name=LOC107985677
NA12877_chrY	CAT	transcript	1596278	1602586	1000	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=NA12877_ch_T0000052;gene_id=NA12877_ch_G0000020;Parent=NA12877_ch_G0000020;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=NA12877_ch_T0000052;Name=LOC107985677
NA12877_chrY	CAT	exon	1596278	1597336	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=NA12877_ch_T0000052;gene_id=NA12877_ch_G0000020;Parent=NA12877_ch_T0000052;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=exon:NA12877_ch_T0000052:0;Name=LOC107985677;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1597337	1598494	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=NA12877_ch_T0000052;gene_id=NA12877_ch_G0000020;Parent=NA12877_ch_T0000052;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=intron:NA12877_ch_T0000052:0;Name=LOC107985677;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1598495	1598608	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=NA12877_ch_T0000052;gene_id=NA12877_ch_G0000020;Parent=NA12877_ch_T0000052;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=exon:NA12877_ch_T0000052:1;Name=LOC107985677;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1598609	1599097	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=NA12877_ch_T0000052;gene_id=NA12877_ch_G0000020;Parent=NA12877_ch_T0000052;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=intron:NA12877_ch_T0000052:1;Name=LOC107985677;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1599098	1599224	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=NA12877_ch_T0000052;gene_id=NA12877_ch_G0000020;Parent=NA12877_ch_T0000052;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=exon:NA12877_ch_T0000052:2;Name=LOC107985677;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1599225	1600555	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=NA12877_ch_T0000052;gene_id=NA12877_ch_G0000020;Parent=NA12877_ch_T0000052;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=intron:NA12877_ch_T0000052:2;Name=LOC107985677;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1600556	1600871	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=NA12877_ch_T0000052;gene_id=NA12877_ch_G0000020;Parent=NA12877_ch_T0000052;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=exon:NA12877_ch_T0000052:3;Name=LOC107985677;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1600872	1601271	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=NA12877_ch_T0000052;gene_id=NA12877_ch_G0000020;Parent=NA12877_ch_T0000052;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=intron:NA12877_ch_T0000052:3;Name=LOC107985677;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1601272	1601871	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=NA12877_ch_T0000052;gene_id=NA12877_ch_G0000020;Parent=NA12877_ch_T0000052;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=exon:NA12877_ch_T0000052:4;Name=LOC107985677;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1601872	1602247	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=NA12877_ch_T0000052;gene_id=NA12877_ch_G0000020;Parent=NA12877_ch_T0000052;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=intron:NA12877_ch_T0000052:4;Name=LOC107985677;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1602248	1602586	.	-	.	source_transcript=hg002_chrY_paternal_32.1;source_transcript_name=hg002_chrY_paternal_32.1;source_gene=hg002_chrY_paternal_32;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_32;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_32.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_32.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107985677;alternative_source_transcripts=hg002_chrY_paternal_32.1,hg002_chrY_paternal_32.1;transcript_id=NA12877_ch_T0000052;gene_id=NA12877_ch_G0000020;Parent=NA12877_ch_T0000052;transcript_name=hg002_chrY_paternal_32.1;gene_name=LOC107985677;ID=exon:NA12877_ch_T0000052:5;Name=LOC107985677;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1751924	2038236	.	-	.	source_gene_common_name=DHRSX;source_gene=hg002_chrY_paternal_33;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;gene_id=NA12877_ch_G0000021;gene_biotype=protein_coding;gene_name=DHRSX;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000021;Name=DHRSX
NA12877_chrY	CAT	transcript	1751924	2038236	100	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_G0000021;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=NA12877_ch_T0000053;Name=DHRSX
NA12877_chrY	CAT	exon	1751924	1753647	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:NA12877_ch_T0000053:0;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1753459	1753647	.	-	0	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:NA12877_ch_T0000053:0;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	1753459	1753461	.	-	0	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=stop_codon:NA12877_ch_T0000053;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1753648	1776139	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=intron:NA12877_ch_T0000053:0;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1776140	1776347	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:NA12877_ch_T0000053:1;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1776140	1776347	.	-	1	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:NA12877_ch_T0000053:1;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1776348	1799867	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=intron:NA12877_ch_T0000053:1;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1799868	1800075	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:NA12877_ch_T0000053:2;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1799868	1800075	.	-	2	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:NA12877_ch_T0000053:2;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1800076	1819849	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=intron:NA12877_ch_T0000053:2;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1819850	1819951	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:NA12877_ch_T0000053:3;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1819850	1819951	.	-	2	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:NA12877_ch_T0000053:3;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1819952	1946012	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=intron:NA12877_ch_T0000053:3;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1946013	1946081	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:NA12877_ch_T0000053:4;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1946013	1946081	.	-	2	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:NA12877_ch_T0000053:4;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1946082	1962467	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=intron:NA12877_ch_T0000053:4;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1962468	1962575	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:NA12877_ch_T0000053:5;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	1962468	1962575	.	-	2	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:NA12877_ch_T0000053:5;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1962576	2038076	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=intron:NA12877_ch_T0000053:5;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2038077	2038236	.	-	.	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=exon:NA12877_ch_T0000053:6;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2038077	2038185	.	-	0	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=CDS:NA12877_ch_T0000053:6;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2038183	2038185	.	-	0	source_transcript=hg002_chrY_paternal_33.1;source_transcript_name=hg002_chrY_paternal_33.1;source_gene=hg002_chrY_paternal_33;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_33;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_33.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_33.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=hg002_chrY_paternal_33.1,hg002_chrY_paternal_33.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000053;gene_id=NA12877_ch_G0000021;Parent=NA12877_ch_T0000053;transcript_name=hg002_chrY_paternal_33.1;gene_name=DHRSX;ID=start_codon:NA12877_ch_T0000053;Name=DHRSX;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	1857785	1874833	.	+	.	source_gene_common_name=LOC124905239;source_gene=hg002_chrY_paternal_34;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;gene_id=NA12877_ch_G0000022;gene_biotype=lncRNA;gene_name=LOC124905239;gene_sources=liftoff;ID=NA12877_ch_G0000022;Name=LOC124905239
NA12877_chrY	CAT	transcript	1857785	1874833	1000	+	.	source_transcript=hg002_chrY_paternal_34.1;source_transcript_name=hg002_chrY_paternal_34.1;source_gene=hg002_chrY_paternal_34;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_34;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_34.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_34.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905239;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;transcript_id=NA12877_ch_T0000054;gene_id=NA12877_ch_G0000022;Parent=NA12877_ch_G0000022;transcript_name=hg002_chrY_paternal_34.1;gene_name=LOC124905239;ID=NA12877_ch_T0000054;Name=LOC124905239
NA12877_chrY	CAT	exon	1857785	1859063	.	+	.	source_transcript=hg002_chrY_paternal_34.1;source_transcript_name=hg002_chrY_paternal_34.1;source_gene=hg002_chrY_paternal_34;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_34;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_34.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_34.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905239;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;transcript_id=NA12877_ch_T0000054;gene_id=NA12877_ch_G0000022;Parent=NA12877_ch_T0000054;transcript_name=hg002_chrY_paternal_34.1;gene_name=LOC124905239;ID=exon:NA12877_ch_T0000054:0;Name=LOC124905239;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1859064	1866561	.	+	.	source_transcript=hg002_chrY_paternal_34.1;source_transcript_name=hg002_chrY_paternal_34.1;source_gene=hg002_chrY_paternal_34;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_34;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_34.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_34.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905239;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;transcript_id=NA12877_ch_T0000054;gene_id=NA12877_ch_G0000022;Parent=NA12877_ch_T0000054;transcript_name=hg002_chrY_paternal_34.1;gene_name=LOC124905239;ID=intron:NA12877_ch_T0000054:0;Name=LOC124905239;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1866562	1866688	.	+	.	source_transcript=hg002_chrY_paternal_34.1;source_transcript_name=hg002_chrY_paternal_34.1;source_gene=hg002_chrY_paternal_34;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_34;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_34.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_34.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905239;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;transcript_id=NA12877_ch_T0000054;gene_id=NA12877_ch_G0000022;Parent=NA12877_ch_T0000054;transcript_name=hg002_chrY_paternal_34.1;gene_name=LOC124905239;ID=exon:NA12877_ch_T0000054:1;Name=LOC124905239;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	1866689	1874666	.	+	.	source_transcript=hg002_chrY_paternal_34.1;source_transcript_name=hg002_chrY_paternal_34.1;source_gene=hg002_chrY_paternal_34;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_34;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_34.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_34.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905239;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;transcript_id=NA12877_ch_T0000054;gene_id=NA12877_ch_G0000022;Parent=NA12877_ch_T0000054;transcript_name=hg002_chrY_paternal_34.1;gene_name=LOC124905239;ID=intron:NA12877_ch_T0000054:1;Name=LOC124905239;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	1874667	1874833	.	+	.	source_transcript=hg002_chrY_paternal_34.1;source_transcript_name=hg002_chrY_paternal_34.1;source_gene=hg002_chrY_paternal_34;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_34;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_34.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_34.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905239;alternative_source_transcripts=hg002_chrY_paternal_34.1,hg002_chrY_paternal_34.1;transcript_id=NA12877_ch_T0000054;gene_id=NA12877_ch_G0000022;Parent=NA12877_ch_T0000054;transcript_name=hg002_chrY_paternal_34.1;gene_name=LOC124905239;ID=exon:NA12877_ch_T0000054:2;Name=LOC124905239;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	2023690	2038236	.	-	.	source_gene_common_name=ZBED1;source_gene=hg002_chrY_paternal_35;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;gene_id=NA12877_ch_G0000023;gene_biotype=protein_coding;gene_name=ZBED1;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000023;Name=ZBED1
NA12877_chrY	CAT	transcript	2023690	2037885	100	-	.	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000055;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_G0000023;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=NA12877_ch_T0000055;Name=ZBED1
NA12877_chrY	CAT	exon	2023690	2028027	.	-	.	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000055;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000055;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=exon:NA12877_ch_T0000055:0;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2025890	2027974	.	-	0	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000055;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000055;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=CDS:NA12877_ch_T0000055:0;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2025890	2025892	.	-	0	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000055;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000055;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=stop_codon:NA12877_ch_T0000055;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2027972	2027974	.	-	0	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000055;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000055;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=start_codon:NA12877_ch_T0000055;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2028028	2037570	.	-	.	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000055;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000055;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=intron:NA12877_ch_T0000055:0;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2037571	2037885	.	-	.	source_transcript=hg002_chrY_paternal_35.1;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.1,hg002_chrY_paternal_35.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000055;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000055;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=exon:NA12877_ch_T0000055:1;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2023690	2038236	100	-	.	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000056;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_G0000023;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=NA12877_ch_T0000056;Name=ZBED1
NA12877_chrY	CAT	exon	2023690	2028027	.	-	.	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000056;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000056;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=exon:NA12877_ch_T0000056:0;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2025890	2027974	.	-	0	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000056;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000056;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=CDS:NA12877_ch_T0000056:0;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2025890	2025892	.	-	0	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000056;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000056;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=stop_codon:NA12877_ch_T0000056;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2027972	2027974	.	-	0	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000056;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000056;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=start_codon:NA12877_ch_T0000056;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2028028	2038076	.	-	.	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000056;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000056;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=intron:NA12877_ch_T0000056:0;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2038077	2038236	.	-	.	source_transcript=hg002_chrY_paternal_35.2;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.2,hg002_chrY_paternal_35.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000056;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000056;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=exon:NA12877_ch_T0000056:1;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2023690	2038236	100	-	.	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000057;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_G0000023;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=NA12877_ch_T0000057;Name=ZBED1
NA12877_chrY	CAT	exon	2023690	2028024	.	-	.	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000057;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000057;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=exon:NA12877_ch_T0000057:0;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2025890	2027974	.	-	0	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000057;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000057;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=CDS:NA12877_ch_T0000057:0;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2025890	2025892	.	-	0	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000057;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000057;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=stop_codon:NA12877_ch_T0000057;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2027972	2027974	.	-	0	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000057;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000057;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=start_codon:NA12877_ch_T0000057;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2028025	2038076	.	-	.	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000057;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000057;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=intron:NA12877_ch_T0000057:0;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2038077	2038236	.	-	.	source_transcript=hg002_chrY_paternal_35.3;source_transcript_name=hg002_chrY_paternal_35.3;source_gene=hg002_chrY_paternal_35;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_35;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_35.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_35.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=hg002_chrY_paternal_35.3,hg002_chrY_paternal_35.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000057;gene_id=NA12877_ch_G0000023;Parent=NA12877_ch_T0000057;transcript_name=hg002_chrY_paternal_35.3;gene_name=ZBED1;ID=exon:NA12877_ch_T0000057:1;Name=ZBED1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	2102094	2145666	.	-	.	source_gene_common_name=LOC101928092;source_gene=hg002_chrY_paternal_36;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;gene_id=NA12877_ch_G0000024;gene_biotype=lncRNA;gene_name=LOC101928092;gene_sources=liftoff;ID=NA12877_ch_G0000024;Name=LOC101928092
NA12877_chrY	CAT	transcript	2102094	2110659	1000	-	.	source_transcript=hg002_chrY_paternal_36.1;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;transcript_id=NA12877_ch_T0000058;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_G0000024;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=NA12877_ch_T0000058;Name=LOC101928092
NA12877_chrY	CAT	exon	2102094	2103357	.	-	.	source_transcript=hg002_chrY_paternal_36.1;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;transcript_id=NA12877_ch_T0000058;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000058;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000058:0;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2103358	2106073	.	-	.	source_transcript=hg002_chrY_paternal_36.1;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;transcript_id=NA12877_ch_T0000058;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000058;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:NA12877_ch_T0000058:0;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2106074	2106229	.	-	.	source_transcript=hg002_chrY_paternal_36.1;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;transcript_id=NA12877_ch_T0000058;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000058;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000058:1;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2106230	2110121	.	-	.	source_transcript=hg002_chrY_paternal_36.1;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;transcript_id=NA12877_ch_T0000058;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000058;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:NA12877_ch_T0000058:1;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2110122	2110659	.	-	.	source_transcript=hg002_chrY_paternal_36.1;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.1,hg002_chrY_paternal_36.1;transcript_id=NA12877_ch_T0000058;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000058;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000058:2;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2102094	2110659	1000	-	.	source_transcript=hg002_chrY_paternal_36.2;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.2,hg002_chrY_paternal_36.2;transcript_id=NA12877_ch_T0000059;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_G0000024;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=NA12877_ch_T0000059;Name=LOC101928092
NA12877_chrY	CAT	exon	2102094	2103357	.	-	.	source_transcript=hg002_chrY_paternal_36.2;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.2,hg002_chrY_paternal_36.2;transcript_id=NA12877_ch_T0000059;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000059;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000059:0;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2103358	2106073	.	-	.	source_transcript=hg002_chrY_paternal_36.2;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.2,hg002_chrY_paternal_36.2;transcript_id=NA12877_ch_T0000059;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000059;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:NA12877_ch_T0000059:0;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2106074	2106229	.	-	.	source_transcript=hg002_chrY_paternal_36.2;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.2,hg002_chrY_paternal_36.2;transcript_id=NA12877_ch_T0000059;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000059;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000059:1;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2106230	2110138	.	-	.	source_transcript=hg002_chrY_paternal_36.2;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.2,hg002_chrY_paternal_36.2;transcript_id=NA12877_ch_T0000059;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000059;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:NA12877_ch_T0000059:1;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2110139	2110659	.	-	.	source_transcript=hg002_chrY_paternal_36.2;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.2,hg002_chrY_paternal_36.2;transcript_id=NA12877_ch_T0000059;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000059;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000059:2;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2102094	2145598	1000	-	.	source_transcript=hg002_chrY_paternal_36.3;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.3,hg002_chrY_paternal_36.3;transcript_id=NA12877_ch_T0000060;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_G0000024;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=NA12877_ch_T0000060;Name=LOC101928092
NA12877_chrY	CAT	exon	2102094	2103357	.	-	.	source_transcript=hg002_chrY_paternal_36.3;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.3,hg002_chrY_paternal_36.3;transcript_id=NA12877_ch_T0000060;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000060;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000060:0;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2103358	2106073	.	-	.	source_transcript=hg002_chrY_paternal_36.3;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.3,hg002_chrY_paternal_36.3;transcript_id=NA12877_ch_T0000060;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000060;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:NA12877_ch_T0000060:0;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2106074	2106229	.	-	.	source_transcript=hg002_chrY_paternal_36.3;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.3,hg002_chrY_paternal_36.3;transcript_id=NA12877_ch_T0000060;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000060;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000060:1;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2106230	2145531	.	-	.	source_transcript=hg002_chrY_paternal_36.3;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.3,hg002_chrY_paternal_36.3;transcript_id=NA12877_ch_T0000060;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000060;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:NA12877_ch_T0000060:1;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2145532	2145598	.	-	.	source_transcript=hg002_chrY_paternal_36.3;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.3,hg002_chrY_paternal_36.3;transcript_id=NA12877_ch_T0000060;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000060;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000060:2;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2102094	2145609	1000	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=NA12877_ch_T0000061;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_G0000024;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=NA12877_ch_T0000061;Name=LOC101928092
NA12877_chrY	CAT	exon	2102094	2103357	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=NA12877_ch_T0000061;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000061;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000061:0;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2103358	2106073	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=NA12877_ch_T0000061;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000061;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:NA12877_ch_T0000061:0;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2106074	2106229	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=NA12877_ch_T0000061;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000061;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000061:1;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2106230	2110121	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=NA12877_ch_T0000061;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000061;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:NA12877_ch_T0000061:1;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2110122	2110315	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=NA12877_ch_T0000061;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000061;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000061:2;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2110316	2145531	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=NA12877_ch_T0000061;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000061;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:NA12877_ch_T0000061:2;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2145532	2145609	.	-	.	source_transcript=hg002_chrY_paternal_36.4;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.4,hg002_chrY_paternal_36.4;transcript_id=NA12877_ch_T0000061;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000061;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000061:3;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2102094	2145666	1000	-	.	source_transcript=hg002_chrY_paternal_36.5;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.5,hg002_chrY_paternal_36.5;transcript_id=NA12877_ch_T0000062;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_G0000024;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=NA12877_ch_T0000062;Name=LOC101928092
NA12877_chrY	CAT	exon	2102094	2103357	.	-	.	source_transcript=hg002_chrY_paternal_36.5;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.5,hg002_chrY_paternal_36.5;transcript_id=NA12877_ch_T0000062;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000062;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000062:0;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2103358	2145531	.	-	.	source_transcript=hg002_chrY_paternal_36.5;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.5,hg002_chrY_paternal_36.5;transcript_id=NA12877_ch_T0000062;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000062;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=intron:NA12877_ch_T0000062:0;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2145532	2145666	.	-	.	source_transcript=hg002_chrY_paternal_36.5;source_transcript_name=hg002_chrY_paternal_36.1;source_gene=hg002_chrY_paternal_36;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_36;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_36.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_36.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928092;alternative_source_transcripts=hg002_chrY_paternal_36.5,hg002_chrY_paternal_36.5;transcript_id=NA12877_ch_T0000062;gene_id=NA12877_ch_G0000024;Parent=NA12877_ch_T0000062;transcript_name=hg002_chrY_paternal_36.1;gene_name=LOC101928092;ID=exon:NA12877_ch_T0000062:1;Name=LOC101928092;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	2145617	2145678	.	+	.	source_gene_common_name=MIR6089;source_gene=hg002_chrY_paternal_37;alternative_source_transcripts=hg002_chrY_paternal_37.1,hg002_chrY_paternal_37.1;gene_id=NA12877_ch_G0000025;gene_biotype=miRNA;gene_name=MIR6089;gene_sources=liftoff;ID=NA12877_ch_G0000025;Name=MIR6089
NA12877_chrY	CAT	transcript	2145617	2145680	1000	+	.	source_transcript=hg002_chrY_paternal_37.1;source_transcript_name=hg002_chrY_paternal_37.1;source_gene=hg002_chrY_paternal_37;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_37;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_37.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_37.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR6089;alternative_source_transcripts=hg002_chrY_paternal_37.1,hg002_chrY_paternal_37.1;transcript_id=NA12877_ch_T0000063;gene_id=NA12877_ch_G0000025;Parent=NA12877_ch_G0000025;transcript_name=hg002_chrY_paternal_37.1;gene_name=MIR6089;ID=NA12877_ch_T0000063;Name=MIR6089
NA12877_chrY	CAT	exon	2145617	2145680	.	+	.	source_transcript=hg002_chrY_paternal_37.1;source_transcript_name=hg002_chrY_paternal_37.1;source_gene=hg002_chrY_paternal_37;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_37;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_37.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_37.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR6089;alternative_source_transcripts=hg002_chrY_paternal_37.1,hg002_chrY_paternal_37.1;transcript_id=NA12877_ch_T0000063;gene_id=NA12877_ch_G0000025;Parent=NA12877_ch_T0000063;transcript_name=hg002_chrY_paternal_37.1;gene_name=MIR6089;ID=exon:NA12877_ch_T0000063:0;Name=MIR6089;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2145655	2145678	1000	+	.	source_transcript=hg002_chrY_paternal_37.2;source_transcript_name=hg002_chrY_paternal_37.1;source_gene=hg002_chrY_paternal_37;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_37;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_37.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_37.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR6089;alternative_source_transcripts=hg002_chrY_paternal_37.2,hg002_chrY_paternal_37.2;transcript_id=NA12877_ch_T0000064;gene_id=NA12877_ch_G0000025;Parent=NA12877_ch_G0000025;transcript_name=hg002_chrY_paternal_37.1;gene_name=MIR6089;ID=NA12877_ch_T0000064;Name=MIR6089
NA12877_chrY	CAT	exon	2145655	2145678	.	+	.	source_transcript=hg002_chrY_paternal_37.2;source_transcript_name=hg002_chrY_paternal_37.1;source_gene=hg002_chrY_paternal_37;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_37;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_37.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_37.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR6089;alternative_source_transcripts=hg002_chrY_paternal_37.2,hg002_chrY_paternal_37.2;transcript_id=NA12877_ch_T0000064;gene_id=NA12877_ch_G0000025;Parent=NA12877_ch_T0000064;transcript_name=hg002_chrY_paternal_37.1;gene_name=MIR6089;ID=exon:NA12877_ch_T0000064:0;Name=MIR6089;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	2145691	2193889	.	+	.	source_gene_common_name=CD99P1;source_gene=hg002_chrY_paternal_38;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;gene_id=NA12877_ch_G0000026;gene_biotype=transcribed_pseudogene;gene_name=CD99P1;gene_sources=liftoff;ID=NA12877_ch_G0000026;Name=CD99P1
NA12877_chrY	CAT	transcript	2145691	2175008	1000	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_G0000026;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=NA12877_ch_T0000065;Name=CD99P1
NA12877_chrY	CAT	exon	2145691	2145895	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000065:0;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2145896	2147395	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000065:0;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2147396	2147438	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000065:1;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2147439	2148541	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000065:1;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2148542	2148610	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000065:2;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2148611	2152206	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000065:2;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2152207	2152360	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000065:3;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2152361	2155130	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000065:3;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2155131	2155175	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000065:4;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2155176	2155819	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000065:4;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2155820	2155888	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000065:5;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2155889	2159084	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000065:5;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2159085	2159129	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000065:6;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2159130	2159779	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000065:6;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2159780	2159848	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000065:7;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2159849	2162995	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000065:7;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2162996	2163041	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000065:8;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2163042	2174652	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000065:8;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2174653	2175008	.	+	.	source_transcript=hg002_chrY_paternal_38.1;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.1,hg002_chrY_paternal_38.1;transcript_id=NA12877_ch_T0000065;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000065;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000065:9;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2145691	2193889	1000	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_G0000026;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=NA12877_ch_T0000066;Name=CD99P1
NA12877_chrY	CAT	exon	2145691	2145895	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000066:0;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2145896	2147395	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000066:0;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2147396	2147438	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000066:1;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2147439	2148541	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000066:1;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2148542	2148610	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000066:2;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2148611	2152206	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000066:2;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2152207	2152360	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000066:3;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2152361	2155130	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000066:3;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2155131	2155175	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000066:4;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2155176	2155819	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000066:4;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2155820	2155888	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000066:5;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2155889	2159779	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000066:5;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2159780	2159848	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000066:6;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2159849	2162995	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000066:6;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2162996	2163041	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000066:7;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2163042	2191686	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=intron:NA12877_ch_T0000066:7;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2191687	2193889	.	+	.	source_transcript=hg002_chrY_paternal_38.2;source_transcript_name=hg002_chrY_paternal_38.1;source_gene=hg002_chrY_paternal_38;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_38;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_38.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_38.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;alternative_source_transcripts=hg002_chrY_paternal_38.2,hg002_chrY_paternal_38.2;transcript_id=NA12877_ch_T0000066;gene_id=NA12877_ch_G0000026;Parent=NA12877_ch_T0000066;transcript_name=hg002_chrY_paternal_38.1;gene_name=CD99P1;ID=exon:NA12877_ch_T0000066:8;Name=CD99P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	2149383	2151738	.	-	.	source_gene_common_name=LINC00102;source_gene=hg002_chrY_paternal_39;alternative_source_transcripts=hg002_chrY_paternal_39.1,hg002_chrY_paternal_39.1;gene_id=NA12877_ch_G0000027;gene_biotype=lncRNA;gene_name=LINC00102;gene_sources=liftoff;ID=NA12877_ch_G0000027;Name=LINC00102
NA12877_chrY	CAT	transcript	2149383	2151738	1000	-	.	source_transcript=hg002_chrY_paternal_39.1;source_transcript_name=hg002_chrY_paternal_39.1;source_gene=hg002_chrY_paternal_39;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_39;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_39.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_39.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00102;alternative_source_transcripts=hg002_chrY_paternal_39.1,hg002_chrY_paternal_39.1;transcript_id=NA12877_ch_T0000067;gene_id=NA12877_ch_G0000027;Parent=NA12877_ch_G0000027;transcript_name=hg002_chrY_paternal_39.1;gene_name=LINC00102;ID=NA12877_ch_T0000067;Name=LINC00102
NA12877_chrY	CAT	exon	2149383	2150088	.	-	.	source_transcript=hg002_chrY_paternal_39.1;source_transcript_name=hg002_chrY_paternal_39.1;source_gene=hg002_chrY_paternal_39;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_39;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_39.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_39.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00102;alternative_source_transcripts=hg002_chrY_paternal_39.1,hg002_chrY_paternal_39.1;transcript_id=NA12877_ch_T0000067;gene_id=NA12877_ch_G0000027;Parent=NA12877_ch_T0000067;transcript_name=hg002_chrY_paternal_39.1;gene_name=LINC00102;ID=exon:NA12877_ch_T0000067:0;Name=LINC00102;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2150089	2151107	.	-	.	source_transcript=hg002_chrY_paternal_39.1;source_transcript_name=hg002_chrY_paternal_39.1;source_gene=hg002_chrY_paternal_39;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_39;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_39.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_39.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00102;alternative_source_transcripts=hg002_chrY_paternal_39.1,hg002_chrY_paternal_39.1;transcript_id=NA12877_ch_T0000067;gene_id=NA12877_ch_G0000027;Parent=NA12877_ch_T0000067;transcript_name=hg002_chrY_paternal_39.1;gene_name=LINC00102;ID=intron:NA12877_ch_T0000067:0;Name=LINC00102;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2151108	2151738	.	-	.	source_transcript=hg002_chrY_paternal_39.1;source_transcript_name=hg002_chrY_paternal_39.1;source_gene=hg002_chrY_paternal_39;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_39;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_39.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_39.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00102;alternative_source_transcripts=hg002_chrY_paternal_39.1,hg002_chrY_paternal_39.1;transcript_id=NA12877_ch_T0000067;gene_id=NA12877_ch_G0000027;Parent=NA12877_ch_T0000067;transcript_name=hg002_chrY_paternal_39.1;gene_name=LINC00102;ID=exon:NA12877_ch_T0000067:1;Name=LINC00102;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	2227514	2277533	.	+	.	source_gene_common_name=CD99;source_gene=hg002_chrY_paternal_40;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;gene_id=NA12877_ch_G0000028;gene_biotype=protein_coding;gene_name=CD99;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000028;Name=CD99
NA12877_chrY	CAT	transcript	2227514	2272660	100	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_G0000028;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=NA12877_ch_T0000068;Name=CD99
NA12877_chrY	CAT	exon	2227514	2227646	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000068:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2227580	2227646	.	+	0	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000068:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2227580	2227582	.	+	0	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=start_codon:NA12877_ch_T0000068;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2227647	2250644	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000068:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2250645	2250677	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000068:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2250645	2250677	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000068:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2250678	2253829	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000068:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2253830	2253877	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000068:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2253830	2253877	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000068:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2253878	2255883	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000068:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2255884	2255928	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000068:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2255884	2255928	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000068:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2255929	2256578	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000068:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2256579	2256647	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000068:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2256579	2256647	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000068:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2256648	2258850	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000068:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2258851	2258898	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000068:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2258851	2258898	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000068:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2258899	2259537	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000068:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2259538	2259588	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000068:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2259538	2259588	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000068:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2259589	2262484	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000068:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2262485	2262598	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000068:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2262485	2262598	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000068:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2262599	2269579	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000068:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2269580	2272660	.	+	.	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000068:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2269580	2269587	.	+	2	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000068:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2269585	2269587	.	+	0	source_transcript=hg002_chrY_paternal_40.1;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.1,hg002_chrY_paternal_40.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000068;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000068;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=stop_codon:NA12877_ch_T0000068;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2227514	2277533	100	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_G0000028;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=NA12877_ch_T0000069;Name=CD99
NA12877_chrY	CAT	exon	2227514	2227646	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000069:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2227580	2227646	.	+	0	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000069:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2227580	2227582	.	+	0	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=start_codon:NA12877_ch_T0000069;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2227647	2250644	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000069:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2250645	2250677	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000069:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2250645	2250677	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000069:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2250678	2255883	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000069:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2255884	2255928	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000069:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2255884	2255928	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000069:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2255929	2256578	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000069:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2256579	2256647	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000069:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2256579	2256647	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000069:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2256648	2258850	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000069:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2258851	2258898	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000069:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2258851	2258898	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000069:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2258899	2259537	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000069:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2259538	2259588	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000069:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2259538	2259588	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000069:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2259589	2262484	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000069:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2262485	2262598	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000069:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2262485	2262598	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000069:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2262599	2274423	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000069:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2274424	2274480	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000069:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2274424	2274480	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000069:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2274481	2277001	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000069:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2277002	2277533	.	+	.	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000069:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2277002	2277027	.	+	2	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000069:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2277025	2277027	.	+	0	source_transcript=hg002_chrY_paternal_40.2;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.2,hg002_chrY_paternal_40.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000069;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000069;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=stop_codon:NA12877_ch_T0000069;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2227514	2277533	100	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_G0000028;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=NA12877_ch_T0000070;Name=CD99
NA12877_chrY	CAT	exon	2227514	2227646	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000070:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2227580	2227646	.	+	0	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000070:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2227580	2227582	.	+	0	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=start_codon:NA12877_ch_T0000070;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2227647	2250644	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000070:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2250645	2250677	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000070:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2250645	2250677	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000070:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2250678	2253829	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000070:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2253830	2253877	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000070:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2253830	2253877	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000070:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2253878	2255883	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000070:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2255884	2255928	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000070:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2255884	2255928	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000070:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2255929	2256578	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000070:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2256579	2256647	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000070:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2256579	2256647	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000070:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2256648	2258850	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000070:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2258851	2258898	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000070:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2258851	2258898	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000070:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2258899	2259537	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000070:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2259538	2259588	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000070:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2259538	2259588	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000070:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2259589	2262484	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000070:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2262485	2262598	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000070:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2262485	2262598	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000070:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2262599	2274426	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000070:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2274427	2274480	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000070:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2274427	2274480	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000070:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2274481	2277001	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000070:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2277002	2277533	.	+	.	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000070:9;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2277002	2277027	.	+	2	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000070:9;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2277025	2277027	.	+	0	source_transcript=hg002_chrY_paternal_40.3;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.3,hg002_chrY_paternal_40.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000070;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000070;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=stop_codon:NA12877_ch_T0000070;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2227514	2277533	100	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_G0000028;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=NA12877_ch_T0000071;Name=CD99
NA12877_chrY	CAT	exon	2227514	2227646	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000071:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2227580	2227646	.	+	0	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000071:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2227580	2227582	.	+	0	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=start_codon:NA12877_ch_T0000071;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2227647	2250644	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000071:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2250645	2250677	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000071:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2250645	2250677	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000071:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2250678	2255883	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000071:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2255884	2255928	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000071:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2255884	2255928	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000071:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2255929	2256578	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000071:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2256579	2256647	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000071:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2256579	2256647	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000071:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2256648	2258850	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000071:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2258851	2258898	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000071:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2258851	2258898	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000071:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2258899	2259537	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000071:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2259538	2259588	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000071:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2259538	2259588	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000071:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2259589	2262484	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000071:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2262485	2262598	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000071:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2262485	2262598	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000071:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2262599	2274426	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000071:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2274427	2274480	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000071:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2274427	2274480	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000071:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2274481	2277001	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000071:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2277002	2277533	.	+	.	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000071:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2277002	2277027	.	+	2	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000071:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2277025	2277027	.	+	0	source_transcript=hg002_chrY_paternal_40.4;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.4,hg002_chrY_paternal_40.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000071;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000071;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=stop_codon:NA12877_ch_T0000071;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2227514	2277533	100	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_G0000028;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=NA12877_ch_T0000072;Name=CD99
NA12877_chrY	CAT	exon	2227514	2227646	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000072:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2227580	2227646	.	+	0	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000072:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2227580	2227582	.	+	0	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=start_codon:NA12877_ch_T0000072;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2227647	2250644	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000072:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2250645	2250677	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000072:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2250645	2250677	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000072:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2250678	2253829	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000072:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2253830	2253877	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000072:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2253830	2253877	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000072:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2253878	2255883	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000072:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2255884	2255928	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000072:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2255884	2255928	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000072:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2255929	2256578	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000072:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2256579	2256647	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000072:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2256579	2256647	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000072:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2256648	2258850	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000072:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2258851	2258898	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000072:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2258851	2258898	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000072:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2258899	2262484	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000072:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2262485	2262598	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000072:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2262485	2262598	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000072:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2262599	2274423	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000072:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2274424	2274480	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000072:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2274424	2274480	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000072:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2274481	2277001	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000072:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2277002	2277533	.	+	.	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000072:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2277002	2277027	.	+	2	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000072:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2277025	2277027	.	+	0	source_transcript=hg002_chrY_paternal_40.5;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.5,hg002_chrY_paternal_40.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000072;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000072;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=stop_codon:NA12877_ch_T0000072;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2227514	2277533	100	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_G0000028;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=NA12877_ch_T0000073;Name=CD99
NA12877_chrY	CAT	exon	2227514	2227646	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000073:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2227580	2227646	.	+	0	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000073:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2227580	2227582	.	+	0	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=start_codon:NA12877_ch_T0000073;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2227647	2250644	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000073:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2250645	2250677	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000073:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2250645	2250677	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000073:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2250678	2253829	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000073:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2253830	2253877	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000073:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2253830	2253877	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000073:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2253878	2255883	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000073:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2255884	2255928	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000073:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2255884	2255928	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000073:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2255929	2256578	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000073:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2256579	2256647	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000073:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2256579	2256647	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000073:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2256648	2258850	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000073:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2258851	2258898	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000073:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2258851	2258898	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000073:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2258899	2259537	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000073:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2259538	2259588	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000073:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2259538	2259588	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000073:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2259589	2262484	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000073:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2262485	2262598	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000073:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2262485	2262598	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000073:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2262599	2274423	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000073:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2274424	2274480	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000073:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2274424	2274480	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000073:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2274481	2277001	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=intron:NA12877_ch_T0000073:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2277002	2277533	.	+	.	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=exon:NA12877_ch_T0000073:9;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2277002	2277027	.	+	2	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=CDS:NA12877_ch_T0000073:9;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2277025	2277027	.	+	0	source_transcript=hg002_chrY_paternal_40.6;source_transcript_name=hg002_chrY_paternal_40.7;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_40.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.6,hg002_chrY_paternal_40.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000073;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000073;transcript_name=hg002_chrY_paternal_40.7;gene_name=CD99;ID=stop_codon:NA12877_ch_T0000073;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2227514	2277533	1000	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_G0000028;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=NA12877_ch_T0000074;Name=CD99
NA12877_chrY	CAT	exon	2227514	2227646	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:NA12877_ch_T0000074:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2227647	2250644	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:NA12877_ch_T0000074:0;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2250645	2250677	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:NA12877_ch_T0000074:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2250678	2253829	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:NA12877_ch_T0000074:1;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2253830	2253877	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:NA12877_ch_T0000074:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2253878	2255883	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:NA12877_ch_T0000074:2;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2255884	2255928	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:NA12877_ch_T0000074:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2255929	2256578	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:NA12877_ch_T0000074:3;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2256579	2256647	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:NA12877_ch_T0000074:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2256648	2258850	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:NA12877_ch_T0000074:4;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2258851	2258898	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:NA12877_ch_T0000074:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2258899	2259537	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:NA12877_ch_T0000074:5;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2259538	2259588	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:NA12877_ch_T0000074:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2259589	2262484	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:NA12877_ch_T0000074:6;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2262485	2262598	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:NA12877_ch_T0000074:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2262599	2269579	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:NA12877_ch_T0000074:7;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2269580	2269597	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:NA12877_ch_T0000074:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2269598	2274426	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:NA12877_ch_T0000074:8;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2274427	2274480	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:NA12877_ch_T0000074:9;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2274481	2277001	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=intron:NA12877_ch_T0000074:9;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2277002	2277533	.	+	.	source_transcript=hg002_chrY_paternal_40.7;source_transcript_name=hg002_chrY_paternal_40.1;source_gene=hg002_chrY_paternal_40;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_40;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_40.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_40.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=hg002_chrY_paternal_40.7,hg002_chrY_paternal_40.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000074;gene_id=NA12877_ch_G0000028;Parent=NA12877_ch_T0000074;transcript_name=hg002_chrY_paternal_40.1;gene_name=CD99;ID=exon:NA12877_ch_T0000074:10;Name=CD99;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	2288554	2311117	.	+	.	source_gene_common_name=XGY2;source_gene=hg002_chrY_paternal_41;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;gene_id=NA12877_ch_G0000029;gene_biotype=transcribed_pseudogene;gene_name=XGY2;gene_sources=liftoff;ID=NA12877_ch_G0000029;Name=XGY2
NA12877_chrY	CAT	transcript	2288554	2311117	1000	+	.	source_transcript=hg002_chrY_paternal_41.1;source_transcript_name=hg002_chrY_paternal_41.1;source_gene=hg002_chrY_paternal_41;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_41;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_41.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_41.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;transcript_id=NA12877_ch_T0000075;gene_id=NA12877_ch_G0000029;Parent=NA12877_ch_G0000029;transcript_name=hg002_chrY_paternal_41.1;gene_name=XGY2;ID=NA12877_ch_T0000075;Name=XGY2
NA12877_chrY	CAT	exon	2288554	2288593	.	+	.	source_transcript=hg002_chrY_paternal_41.1;source_transcript_name=hg002_chrY_paternal_41.1;source_gene=hg002_chrY_paternal_41;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_41;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_41.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_41.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;transcript_id=NA12877_ch_T0000075;gene_id=NA12877_ch_G0000029;Parent=NA12877_ch_T0000075;transcript_name=hg002_chrY_paternal_41.1;gene_name=XGY2;ID=exon:NA12877_ch_T0000075:0;Name=XGY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2288594	2306798	.	+	.	source_transcript=hg002_chrY_paternal_41.1;source_transcript_name=hg002_chrY_paternal_41.1;source_gene=hg002_chrY_paternal_41;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_41;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_41.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_41.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;transcript_id=NA12877_ch_T0000075;gene_id=NA12877_ch_G0000029;Parent=NA12877_ch_T0000075;transcript_name=hg002_chrY_paternal_41.1;gene_name=XGY2;ID=intron:NA12877_ch_T0000075:0;Name=XGY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2306799	2306840	.	+	.	source_transcript=hg002_chrY_paternal_41.1;source_transcript_name=hg002_chrY_paternal_41.1;source_gene=hg002_chrY_paternal_41;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_41;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_41.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_41.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;transcript_id=NA12877_ch_T0000075;gene_id=NA12877_ch_G0000029;Parent=NA12877_ch_T0000075;transcript_name=hg002_chrY_paternal_41.1;gene_name=XGY2;ID=exon:NA12877_ch_T0000075:1;Name=XGY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2306841	2310836	.	+	.	source_transcript=hg002_chrY_paternal_41.1;source_transcript_name=hg002_chrY_paternal_41.1;source_gene=hg002_chrY_paternal_41;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_41;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_41.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_41.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;transcript_id=NA12877_ch_T0000075;gene_id=NA12877_ch_G0000029;Parent=NA12877_ch_T0000075;transcript_name=hg002_chrY_paternal_41.1;gene_name=XGY2;ID=intron:NA12877_ch_T0000075:1;Name=XGY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2310837	2311117	.	+	.	source_transcript=hg002_chrY_paternal_41.1;source_transcript_name=hg002_chrY_paternal_41.1;source_gene=hg002_chrY_paternal_41;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_41;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_41.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_41.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;alternative_source_transcripts=hg002_chrY_paternal_41.1,hg002_chrY_paternal_41.1;transcript_id=NA12877_ch_T0000075;gene_id=NA12877_ch_G0000029;Parent=NA12877_ch_T0000075;transcript_name=hg002_chrY_paternal_41.1;gene_name=XGY2;ID=exon:NA12877_ch_T0000075:2;Name=XGY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	2322969	2323796	.	-	.	source_gene_common_name=SRY;source_gene=hg002_chrY_paternal_43;alternative_source_transcripts=hg002_chrY_paternal_43.1,hg002_chrY_paternal_43.1;gene_id=NA12877_ch_G0000030;gene_biotype=protein_coding;gene_name=SRY;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000030;Name=SRY
NA12877_chrY	CAT	transcript	2322969	2323796	100	-	.	source_transcript=hg002_chrY_paternal_43.1;source_transcript_name=hg002_chrY_paternal_43.1;source_gene=hg002_chrY_paternal_43;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_43;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_43.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_43.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=hg002_chrY_paternal_43.1,hg002_chrY_paternal_43.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000076;gene_id=NA12877_ch_G0000030;Parent=NA12877_ch_G0000030;transcript_name=hg002_chrY_paternal_43.1;gene_name=SRY;ID=NA12877_ch_T0000076;Name=SRY
NA12877_chrY	CAT	exon	2322969	2323796	.	-	.	source_transcript=hg002_chrY_paternal_43.1;source_transcript_name=hg002_chrY_paternal_43.1;source_gene=hg002_chrY_paternal_43;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_43;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_43.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_43.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=hg002_chrY_paternal_43.1,hg002_chrY_paternal_43.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000076;gene_id=NA12877_ch_G0000030;Parent=NA12877_ch_T0000076;transcript_name=hg002_chrY_paternal_43.1;gene_name=SRY;ID=exon:NA12877_ch_T0000076:0;Name=SRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2323103	2323717	.	-	0	source_transcript=hg002_chrY_paternal_43.1;source_transcript_name=hg002_chrY_paternal_43.1;source_gene=hg002_chrY_paternal_43;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_43;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_43.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_43.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=hg002_chrY_paternal_43.1,hg002_chrY_paternal_43.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000076;gene_id=NA12877_ch_G0000030;Parent=NA12877_ch_T0000076;transcript_name=hg002_chrY_paternal_43.1;gene_name=SRY;ID=CDS:NA12877_ch_T0000076:0;Name=SRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2323103	2323105	.	-	0	source_transcript=hg002_chrY_paternal_43.1;source_transcript_name=hg002_chrY_paternal_43.1;source_gene=hg002_chrY_paternal_43;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_43;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_43.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_43.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=hg002_chrY_paternal_43.1,hg002_chrY_paternal_43.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000076;gene_id=NA12877_ch_G0000030;Parent=NA12877_ch_T0000076;transcript_name=hg002_chrY_paternal_43.1;gene_name=SRY;ID=stop_codon:NA12877_ch_T0000076;Name=SRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2323715	2323717	.	-	0	source_transcript=hg002_chrY_paternal_43.1;source_transcript_name=hg002_chrY_paternal_43.1;source_gene=hg002_chrY_paternal_43;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_43;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_43.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_43.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=hg002_chrY_paternal_43.1,hg002_chrY_paternal_43.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000076;gene_id=NA12877_ch_G0000030;Parent=NA12877_ch_T0000076;transcript_name=hg002_chrY_paternal_43.1;gene_name=SRY;ID=start_codon:NA12877_ch_T0000076;Name=SRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	2377717	2403383	.	+	.	source_gene_common_name=RPS4Y1;source_gene=hg002_chrY_paternal_46;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;gene_id=NA12877_ch_G0000031;gene_biotype=protein_coding;gene_name=RPS4Y1;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000031;Name=RPS4Y1
NA12877_chrY	CAT	transcript	2377717	2403383	100	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_G0000031;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=NA12877_ch_T0000077;Name=RPS4Y1
NA12877_chrY	CAT	exon	2377717	2377742	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000077:0;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2377740	2377742	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000077:0;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2377740	2377742	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=start_codon:NA12877_ch_T0000077;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2377743	2378279	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:NA12877_ch_T0000077:0;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2378280	2378357	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000077:1;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2378280	2378357	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000077:1;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2378358	2380191	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:NA12877_ch_T0000077:1;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2380192	2380372	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000077:2;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2380192	2380372	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000077:2;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2380373	2381760	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:NA12877_ch_T0000077:2;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2381761	2381858	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000077:3;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2381761	2381858	.	+	2	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000077:3;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2381859	2390714	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:NA12877_ch_T0000077:3;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2390715	2390886	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000077:4;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2390715	2390886	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000077:4;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2390887	2401202	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:NA12877_ch_T0000077:4;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2401203	2401360	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000077:5;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2401203	2401360	.	+	2	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000077:5;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2401361	2402907	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:NA12877_ch_T0000077:5;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2402908	2403383	.	+	.	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000077:6;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2402908	2403009	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000077:6;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2403007	2403009	.	+	0	source_transcript=hg002_chrY_paternal_46.1;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.1,hg002_chrY_paternal_46.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000077;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000077;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=stop_codon:NA12877_ch_T0000077;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2377717	2403383	100	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_G0000031;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=NA12877_ch_T0000078;Name=RPS4Y1
NA12877_chrY	CAT	exon	2377717	2378088	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000078:0;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2378059	2378088	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000078:0;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2378059	2378061	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=start_codon:NA12877_ch_T0000078;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2378089	2378279	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:NA12877_ch_T0000078:0;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2378280	2378357	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000078:1;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2378280	2378357	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000078:1;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2378358	2380191	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:NA12877_ch_T0000078:1;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2380192	2380372	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000078:2;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2380192	2380372	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000078:2;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2380373	2381760	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:NA12877_ch_T0000078:2;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2381761	2381858	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000078:3;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2381761	2381858	.	+	2	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000078:3;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2381859	2390714	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:NA12877_ch_T0000078:3;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2390715	2390886	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000078:4;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2390715	2390886	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000078:4;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2390887	2401202	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:NA12877_ch_T0000078:4;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2401203	2401360	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000078:5;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2401203	2401360	.	+	2	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000078:5;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2401361	2402907	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=intron:NA12877_ch_T0000078:5;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2402908	2403383	.	+	.	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=exon:NA12877_ch_T0000078:6;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2402908	2403009	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=CDS:NA12877_ch_T0000078:6;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2403007	2403009	.	+	0	source_transcript=hg002_chrY_paternal_46.2;source_transcript_name=hg002_chrY_paternal_46.2;source_gene=hg002_chrY_paternal_46;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_46;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_46.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_46.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=hg002_chrY_paternal_46.2,hg002_chrY_paternal_46.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000078;gene_id=NA12877_ch_G0000031;Parent=NA12877_ch_T0000078;transcript_name=hg002_chrY_paternal_46.2;gene_name=RPS4Y1;ID=stop_codon:NA12877_ch_T0000078;Name=RPS4Y1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	2471851	2518976	.	+	.	source_gene_common_name=ZFY;source_gene=hg002_chrY_paternal_49;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;gene_id=NA12877_ch_G0000032;gene_biotype=protein_coding;gene_name=ZFY;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000032;Name=ZFY
NA12877_chrY	CAT	transcript	2471851	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000079;Name=ZFY
NA12877_chrY	CAT	exon	2471851	2472239	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000079:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2472240	2497542	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000079:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2497543	2498115	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000079:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2497560	2498115	.	+	0	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000079:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2497560	2497562	.	+	0	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000079;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2498116	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000079:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000079:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511564	2511713	.	+	2	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000079:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000079:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000079:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000079:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000079:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000079:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000079:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000079:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000079:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000079:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.1;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.1,hg002_chrY_paternal_49.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000079;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000079;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000079;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2471851	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000080;Name=ZFY
NA12877_chrY	CAT	exon	2471851	2471916	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000080:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2471917	2490377	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000080:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2490378	2490466	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000080:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2490406	2490466	.	+	0	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000080:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2490406	2490408	.	+	0	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000080;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2490467	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000080:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000080:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511564	2511713	.	+	2	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000080:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000080:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000080:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000080:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2513138	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000080:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2513139	2513291	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000080:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2513139	2513291	.	+	2	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000080:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2513292	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000080:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000080:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000080:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000080:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000080:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000080:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.10;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.10,hg002_chrY_paternal_49.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000080;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000080;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000080;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2471851	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000081;Name=ZFY
NA12877_chrY	CAT	exon	2471851	2471916	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000081:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2471917	2490377	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000081:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2490378	2490466	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000081:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2490406	2490466	.	+	0	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000081:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2490406	2490408	.	+	0	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000081;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2490467	2497542	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000081:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2497543	2498115	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000081:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2497543	2498115	.	+	2	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000081:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2498116	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000081:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000081:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511564	2511713	.	+	2	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000081:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000081:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000081:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000081:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2513138	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000081:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2513139	2513291	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000081:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2513139	2513291	.	+	2	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000081:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2513292	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000081:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000081:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000081:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000081:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000081:7;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000081:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.11;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.11,hg002_chrY_paternal_49.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000081;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000081;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000081;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2471851	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000082;Name=ZFY
NA12877_chrY	CAT	exon	2471851	2472239	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000082:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2472240	2497542	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000082:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2497543	2498115	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000082:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2497560	2498115	.	+	0	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000082:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2497560	2497562	.	+	0	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000082;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2498116	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000082:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000082:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511564	2511713	.	+	2	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000082:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000082:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000082:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000082:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2513138	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000082:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2513139	2513291	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000082:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2513139	2513291	.	+	2	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000082:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2513292	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000082:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000082:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000082:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000082:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000082:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000082:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.12;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.12,hg002_chrY_paternal_49.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000082;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000082;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000082;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2471851	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000083;Name=ZFY
NA12877_chrY	CAT	exon	2471851	2471916	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000083:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2471917	2497542	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000083:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2497543	2498115	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000083:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2497560	2498115	.	+	0	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000083:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2497560	2497562	.	+	0	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000083;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2498116	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000083:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000083:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511564	2511713	.	+	2	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000083:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000083:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000083:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000083:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2513138	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000083:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2513139	2513291	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000083:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2513139	2513291	.	+	2	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000083:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2513292	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000083:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000083:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000083:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000083:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000083:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000083:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.13;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.13,hg002_chrY_paternal_49.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000083;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000083;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000083;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2471851	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000084;Name=ZFY
NA12877_chrY	CAT	exon	2471851	2472105	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000084:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2472106	2497542	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000084:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2497543	2498115	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000084:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2497560	2498115	.	+	0	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000084:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2497560	2497562	.	+	0	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000084;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2498116	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000084:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000084:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511564	2511713	.	+	2	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000084:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000084:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000084:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000084:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2513138	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000084:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2513139	2513291	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000084:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2513139	2513291	.	+	2	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000084:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2513292	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000084:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000084:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000084:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000084:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000084:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000084:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.2;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.2,hg002_chrY_paternal_49.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000084;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000084;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000084;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2471851	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000085;Name=ZFY
NA12877_chrY	CAT	exon	2471851	2472239	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000085:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2472240	2490377	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000085:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2490378	2490466	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000085:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2490406	2490466	.	+	0	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000085:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2490406	2490408	.	+	0	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000085;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2490467	2497542	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000085:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2497543	2498115	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000085:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2497543	2498115	.	+	2	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000085:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2498116	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000085:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000085:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511564	2511713	.	+	2	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000085:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000085:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000085:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000085:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000085:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000085:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000085:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000085:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000085:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000085:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.3;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.3,hg002_chrY_paternal_49.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000085;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000085;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000085;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2471851	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000086;Name=ZFY
NA12877_chrY	CAT	exon	2471851	2471916	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000086:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2471917	2490377	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000086:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2490378	2490466	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000086:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2490406	2490466	.	+	0	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000086:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2490406	2490408	.	+	0	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000086;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2490467	2497542	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000086:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2497543	2498115	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000086:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2497543	2498115	.	+	2	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000086:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2498116	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000086:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000086:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511564	2511713	.	+	2	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000086:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000086:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000086:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000086:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000086:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000086:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000086:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000086:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000086:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000086:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.4;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.4,hg002_chrY_paternal_49.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000086;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000086;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000086;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2471851	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000087;Name=ZFY
NA12877_chrY	CAT	exon	2471851	2471916	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000087:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2471917	2497542	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000087:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2497543	2498115	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000087:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2497560	2498115	.	+	0	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000087:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2497560	2497562	.	+	0	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000087;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2498116	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000087:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000087:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511564	2511713	.	+	2	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000087:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000087:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000087:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000087:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000087:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000087:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000087:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000087:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000087:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000087:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.5;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.5,hg002_chrY_paternal_49.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000087;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000087;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000087;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2471851	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000088;Name=ZFY
NA12877_chrY	CAT	exon	2471851	2471916	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000088:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2471917	2490377	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000088:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2490378	2490466	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000088:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2490406	2490466	.	+	0	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000088:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2490406	2490408	.	+	0	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000088;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2490467	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000088:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000088:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511564	2511713	.	+	2	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000088:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000088:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000088:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000088:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000088:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000088:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000088:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000088:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000088:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000088:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.6;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.6,hg002_chrY_paternal_49.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000088;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000088;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000088;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2471851	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000089;Name=ZFY
NA12877_chrY	CAT	exon	2471851	2472239	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000089:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2472240	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000089:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000089:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511629	2511713	.	+	0	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000089:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2511629	2511631	.	+	0	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000089;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000089:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000089:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000089:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000089:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000089:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000089:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000089:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000089:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000089:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.7;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.7,hg002_chrY_paternal_49.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000089;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000089;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000089;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2471851	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000090;Name=ZFY
NA12877_chrY	CAT	exon	2471851	2472239	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000090:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2472240	2490377	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000090:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2490378	2490466	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000090:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2490406	2490466	.	+	0	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000090:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2490406	2490408	.	+	0	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000090;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2490467	2497542	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000090:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2497543	2498115	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000090:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2497543	2498115	.	+	2	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000090:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2498116	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000090:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000090:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511564	2511713	.	+	2	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000090:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000090:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000090:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000090:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2513138	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000090:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2513139	2513291	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000090:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2513139	2513291	.	+	2	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000090:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2513292	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000090:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000090:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000090:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000090:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000090:7;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000090:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.8;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.8,hg002_chrY_paternal_49.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000090;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000090;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000090;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2471851	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000091;Name=ZFY
NA12877_chrY	CAT	exon	2471851	2472105	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000091:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2472106	2490377	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000091:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2490378	2490466	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000091:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2490406	2490466	.	+	0	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000091:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2490406	2490408	.	+	0	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000091;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2490467	2497542	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000091:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2497543	2498115	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000091:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2497543	2498115	.	+	2	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000091:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2498116	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000091:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000091:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511564	2511713	.	+	2	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000091:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000091:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000091:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000091:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2513138	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000091:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2513139	2513291	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000091:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2513139	2513291	.	+	2	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000091:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2513292	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000091:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000091:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000091:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000091:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000091:7;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000091:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.9;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.9,hg002_chrY_paternal_49.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000091;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000091;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000091;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	2482651	2518976	100	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_G0000032;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=NA12877_ch_T0000092;Name=ZFY
NA12877_chrY	CAT	exon	2482651	2482748	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000092:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2482749	2490377	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000092:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2490378	2490466	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000092:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2490406	2490466	.	+	0	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000092:0;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	2490406	2490408	.	+	0	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=start_codon:NA12877_ch_T0000092;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2490467	2497542	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000092:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2497543	2498115	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000092:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2497543	2498115	.	+	2	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000092:1;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2498116	2511563	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000092:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511564	2511713	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000092:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511564	2511713	.	+	2	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000092:2;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2511714	2511979	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000092:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2511980	2512123	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000092:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2511980	2512123	.	+	2	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000092:3;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2512124	2513138	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000092:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2513139	2513291	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000092:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2513139	2513291	.	+	2	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000092:4;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2513292	2514409	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000092:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2514410	2514550	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000092:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2514410	2514550	.	+	2	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000092:5;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2514551	2515279	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=intron:NA12877_ch_T0000092:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2515280	2518976	.	+	.	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=exon:NA12877_ch_T0000092:7;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	2515280	2516463	.	+	2	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=CDS:NA12877_ch_T0000092:6;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	2516461	2516463	.	+	0	source_transcript=hg002_chrY_paternal_49.14;source_transcript_name=hg002_chrY_paternal_49.14;source_gene=hg002_chrY_paternal_49;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_49;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_49.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_49.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=hg002_chrY_paternal_49.14,hg002_chrY_paternal_49.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000092;gene_id=NA12877_ch_G0000032;Parent=NA12877_ch_T0000092;transcript_name=hg002_chrY_paternal_49.14;gene_name=ZFY;ID=stop_codon:NA12877_ch_T0000092;Name=ZFY;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	2503288	2539096	.	-	.	source_gene_common_name=ZFY-AS1;source_gene=hg002_chrY_paternal_50;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;gene_id=NA12877_ch_G0000033;gene_biotype=lncRNA;gene_name=ZFY-AS1;gene_sources=liftoff;ID=NA12877_ch_G0000033;Name=ZFY-AS1
NA12877_chrY	CAT	transcript	2503288	2539096	1000	-	.	source_transcript=hg002_chrY_paternal_50.1;source_transcript_name=hg002_chrY_paternal_50.1;source_gene=hg002_chrY_paternal_50;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_50;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_50.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_50.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;transcript_id=NA12877_ch_T0000093;gene_id=NA12877_ch_G0000033;Parent=NA12877_ch_G0000033;transcript_name=hg002_chrY_paternal_50.1;gene_name=ZFY-AS1;ID=NA12877_ch_T0000093;Name=ZFY-AS1
NA12877_chrY	CAT	exon	2503288	2503408	.	-	.	source_transcript=hg002_chrY_paternal_50.1;source_transcript_name=hg002_chrY_paternal_50.1;source_gene=hg002_chrY_paternal_50;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_50;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_50.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_50.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;transcript_id=NA12877_ch_T0000093;gene_id=NA12877_ch_G0000033;Parent=NA12877_ch_T0000093;transcript_name=hg002_chrY_paternal_50.1;gene_name=ZFY-AS1;ID=exon:NA12877_ch_T0000093:0;Name=ZFY-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2503409	2518307	.	-	.	source_transcript=hg002_chrY_paternal_50.1;source_transcript_name=hg002_chrY_paternal_50.1;source_gene=hg002_chrY_paternal_50;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_50;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_50.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_50.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;transcript_id=NA12877_ch_T0000093;gene_id=NA12877_ch_G0000033;Parent=NA12877_ch_T0000093;transcript_name=hg002_chrY_paternal_50.1;gene_name=ZFY-AS1;ID=intron:NA12877_ch_T0000093:0;Name=ZFY-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2518308	2518397	.	-	.	source_transcript=hg002_chrY_paternal_50.1;source_transcript_name=hg002_chrY_paternal_50.1;source_gene=hg002_chrY_paternal_50;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_50;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_50.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_50.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;transcript_id=NA12877_ch_T0000093;gene_id=NA12877_ch_G0000033;Parent=NA12877_ch_T0000093;transcript_name=hg002_chrY_paternal_50.1;gene_name=ZFY-AS1;ID=exon:NA12877_ch_T0000093:1;Name=ZFY-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2518398	2538782	.	-	.	source_transcript=hg002_chrY_paternal_50.1;source_transcript_name=hg002_chrY_paternal_50.1;source_gene=hg002_chrY_paternal_50;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_50;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_50.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_50.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;transcript_id=NA12877_ch_T0000093;gene_id=NA12877_ch_G0000033;Parent=NA12877_ch_T0000093;transcript_name=hg002_chrY_paternal_50.1;gene_name=ZFY-AS1;ID=intron:NA12877_ch_T0000093:1;Name=ZFY-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2538783	2539096	.	-	.	source_transcript=hg002_chrY_paternal_50.1;source_transcript_name=hg002_chrY_paternal_50.1;source_gene=hg002_chrY_paternal_50;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_50;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_50.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_50.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=hg002_chrY_paternal_50.1,hg002_chrY_paternal_50.1;transcript_id=NA12877_ch_T0000093;gene_id=NA12877_ch_G0000033;Parent=NA12877_ch_T0000093;transcript_name=hg002_chrY_paternal_50.1;gene_name=ZFY-AS1;ID=exon:NA12877_ch_T0000093:2;Name=ZFY-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	2539466	2638742	.	+	.	source_gene_common_name=LINC00278;source_gene=hg002_chrY_paternal_52;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;gene_id=NA12877_ch_G0000034;gene_biotype=lncRNA;gene_name=LINC00278;gene_sources=liftoff;ID=NA12877_ch_G0000034;Name=LINC00278
NA12877_chrY	CAT	transcript	2539466	2638742	1000	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=NA12877_ch_T0000094;gene_id=NA12877_ch_G0000034;Parent=NA12877_ch_G0000034;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=NA12877_ch_T0000094;Name=LINC00278
NA12877_chrY	CAT	exon	2539466	2539687	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=NA12877_ch_T0000094;gene_id=NA12877_ch_G0000034;Parent=NA12877_ch_T0000094;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=exon:NA12877_ch_T0000094:0;Name=LINC00278;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2539688	2615753	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=NA12877_ch_T0000094;gene_id=NA12877_ch_G0000034;Parent=NA12877_ch_T0000094;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=intron:NA12877_ch_T0000094:0;Name=LINC00278;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2615754	2615811	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=NA12877_ch_T0000094;gene_id=NA12877_ch_G0000034;Parent=NA12877_ch_T0000094;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=exon:NA12877_ch_T0000094:1;Name=LINC00278;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2615812	2633464	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=NA12877_ch_T0000094;gene_id=NA12877_ch_G0000034;Parent=NA12877_ch_T0000094;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=intron:NA12877_ch_T0000094:1;Name=LINC00278;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2633465	2633526	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=NA12877_ch_T0000094;gene_id=NA12877_ch_G0000034;Parent=NA12877_ch_T0000094;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=exon:NA12877_ch_T0000094:2;Name=LINC00278;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	2633527	2638554	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=NA12877_ch_T0000094;gene_id=NA12877_ch_G0000034;Parent=NA12877_ch_T0000094;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=intron:NA12877_ch_T0000094:2;Name=LINC00278;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	2638555	2638742	.	+	.	source_transcript=hg002_chrY_paternal_52.1;source_transcript_name=hg002_chrY_paternal_52.1;source_gene=hg002_chrY_paternal_52;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_52;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_52.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_52.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=hg002_chrY_paternal_52.1,hg002_chrY_paternal_52.1;transcript_id=NA12877_ch_T0000094;gene_id=NA12877_ch_G0000034;Parent=NA12877_ch_T0000094;transcript_name=hg002_chrY_paternal_52.1;gene_name=LINC00278;ID=exon:NA12877_ch_T0000094:3;Name=LINC00278;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	3115541	3116515	.	+	.	source_gene_common_name=TGIF2LY;source_gene=hg002_chrY_paternal_55;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;gene_id=NA12877_ch_G0000035;gene_biotype=protein_coding;gene_name=TGIF2LY;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000035;Name=TGIF2LY
NA12877_chrY	CAT	transcript	3115541	3116515	100	+	.	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000095;gene_id=NA12877_ch_G0000035;Parent=NA12877_ch_G0000035;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=NA12877_ch_T0000095;Name=TGIF2LY
NA12877_chrY	CAT	exon	3115541	3115601	.	+	.	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000095;gene_id=NA12877_ch_G0000035;Parent=NA12877_ch_T0000095;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=exon:NA12877_ch_T0000095:0;Name=TGIF2LY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	3115602	3115697	.	+	.	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000095;gene_id=NA12877_ch_G0000035;Parent=NA12877_ch_T0000095;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=intron:NA12877_ch_T0000095:0;Name=TGIF2LY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	3115698	3116515	.	+	.	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000095;gene_id=NA12877_ch_G0000035;Parent=NA12877_ch_T0000095;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=exon:NA12877_ch_T0000095:1;Name=TGIF2LY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	3115719	3116276	.	+	0	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000095;gene_id=NA12877_ch_G0000035;Parent=NA12877_ch_T0000095;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=CDS:NA12877_ch_T0000095:0;Name=TGIF2LY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	3115719	3115721	.	+	0	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000095;gene_id=NA12877_ch_G0000035;Parent=NA12877_ch_T0000095;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=start_codon:NA12877_ch_T0000095;Name=TGIF2LY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	3116274	3116276	.	+	0	source_transcript=hg002_chrY_paternal_55.1;source_transcript_name=hg002_chrY_paternal_55.1;source_gene=hg002_chrY_paternal_55;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_55;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_55.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_55.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=hg002_chrY_paternal_55.1,hg002_chrY_paternal_55.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000095;gene_id=NA12877_ch_G0000035;Parent=NA12877_ch_T0000095;transcript_name=hg002_chrY_paternal_55.1;gene_name=TGIF2LY;ID=stop_codon:NA12877_ch_T0000095;Name=TGIF2LY;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	3337141	3372052	.	+	.	source_gene_common_name=LOC105377227;source_gene=hg002_chrY_paternal_58;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;gene_id=NA12877_ch_G0000036;gene_biotype=lncRNA;gene_name=LOC105377227;gene_sources=liftoff;ID=NA12877_ch_G0000036;Name=LOC105377227
NA12877_chrY	CAT	transcript	3337141	3348156	1000	+	.	source_transcript=hg002_chrY_paternal_58.1;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;transcript_id=NA12877_ch_T0000096;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_G0000036;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=NA12877_ch_T0000096;Name=LOC105377227
NA12877_chrY	CAT	exon	3337141	3340442	.	+	.	source_transcript=hg002_chrY_paternal_58.1;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;transcript_id=NA12877_ch_T0000096;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000096;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:NA12877_ch_T0000096:0;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	3340443	3340874	.	+	.	source_transcript=hg002_chrY_paternal_58.1;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;transcript_id=NA12877_ch_T0000096;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000096;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:NA12877_ch_T0000096:0;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	3340875	3340986	.	+	.	source_transcript=hg002_chrY_paternal_58.1;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;transcript_id=NA12877_ch_T0000096;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000096;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:NA12877_ch_T0000096:1;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	3340987	3346058	.	+	.	source_transcript=hg002_chrY_paternal_58.1;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;transcript_id=NA12877_ch_T0000096;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000096;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:NA12877_ch_T0000096:1;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	3346059	3348156	.	+	.	source_transcript=hg002_chrY_paternal_58.1;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.1,hg002_chrY_paternal_58.1;transcript_id=NA12877_ch_T0000096;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000096;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:NA12877_ch_T0000096:2;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	3337141	3369530	1000	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=NA12877_ch_T0000097;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_G0000036;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=NA12877_ch_T0000097;Name=LOC105377227
NA12877_chrY	CAT	exon	3337141	3340442	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=NA12877_ch_T0000097;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000097;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:NA12877_ch_T0000097:0;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	3340443	3340874	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=NA12877_ch_T0000097;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000097;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:NA12877_ch_T0000097:0;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	3340875	3340986	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=NA12877_ch_T0000097;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000097;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:NA12877_ch_T0000097:1;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	3340987	3346058	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=NA12877_ch_T0000097;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000097;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:NA12877_ch_T0000097:1;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	3346059	3346233	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=NA12877_ch_T0000097;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000097;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:NA12877_ch_T0000097:2;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	3346234	3368900	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=NA12877_ch_T0000097;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000097;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:NA12877_ch_T0000097:2;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	3368901	3369530	.	+	.	source_transcript=hg002_chrY_paternal_58.2;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.2,hg002_chrY_paternal_58.2;transcript_id=NA12877_ch_T0000097;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000097;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:NA12877_ch_T0000097:3;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	3337141	3372052	1000	+	.	source_transcript=hg002_chrY_paternal_58.3;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.3,hg002_chrY_paternal_58.3;transcript_id=NA12877_ch_T0000098;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_G0000036;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=NA12877_ch_T0000098;Name=LOC105377227
NA12877_chrY	CAT	exon	3337141	3340442	.	+	.	source_transcript=hg002_chrY_paternal_58.3;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.3,hg002_chrY_paternal_58.3;transcript_id=NA12877_ch_T0000098;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000098;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:NA12877_ch_T0000098:0;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	3340443	3340874	.	+	.	source_transcript=hg002_chrY_paternal_58.3;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.3,hg002_chrY_paternal_58.3;transcript_id=NA12877_ch_T0000098;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000098;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:NA12877_ch_T0000098:0;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	3340875	3340986	.	+	.	source_transcript=hg002_chrY_paternal_58.3;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.3,hg002_chrY_paternal_58.3;transcript_id=NA12877_ch_T0000098;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000098;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:NA12877_ch_T0000098:1;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	3340987	3371957	.	+	.	source_transcript=hg002_chrY_paternal_58.3;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.3,hg002_chrY_paternal_58.3;transcript_id=NA12877_ch_T0000098;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000098;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=intron:NA12877_ch_T0000098:1;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	3371958	3372052	.	+	.	source_transcript=hg002_chrY_paternal_58.3;source_transcript_name=hg002_chrY_paternal_58.1;source_gene=hg002_chrY_paternal_58;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_58;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_58.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_58.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377227;alternative_source_transcripts=hg002_chrY_paternal_58.3,hg002_chrY_paternal_58.3;transcript_id=NA12877_ch_T0000098;gene_id=NA12877_ch_G0000036;Parent=NA12877_ch_T0000098;transcript_name=hg002_chrY_paternal_58.1;gene_name=LOC105377227;ID=exon:NA12877_ch_T0000098:2;Name=LOC105377227;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	4145247	4145285	.	+	.	source_gene_common_name=MIR9985;source_gene=hg002_chrY_paternal_62;alternative_source_transcripts=hg002_chrY_paternal_62.1,hg002_chrY_paternal_62.1;gene_id=NA12877_ch_G0000037;gene_biotype=miRNA;gene_name=MIR9985;gene_sources=liftoff;ID=NA12877_ch_G0000037;Name=MIR9985
NA12877_chrY	CAT	transcript	4145247	4145355	1000	+	.	source_transcript=hg002_chrY_paternal_62.1;source_transcript_name=hg002_chrY_paternal_62.1;source_gene=hg002_chrY_paternal_62;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_62;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_62.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_62.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR9985;alternative_source_transcripts=hg002_chrY_paternal_62.1,hg002_chrY_paternal_62.1;transcript_id=NA12877_ch_T0000099;gene_id=NA12877_ch_G0000037;Parent=NA12877_ch_G0000037;transcript_name=hg002_chrY_paternal_62.1;gene_name=MIR9985;ID=NA12877_ch_T0000099;Name=MIR9985
NA12877_chrY	CAT	exon	4145247	4145355	.	+	.	source_transcript=hg002_chrY_paternal_62.1;source_transcript_name=hg002_chrY_paternal_62.1;source_gene=hg002_chrY_paternal_62;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_62;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_62.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_62.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR9985;alternative_source_transcripts=hg002_chrY_paternal_62.1,hg002_chrY_paternal_62.1;transcript_id=NA12877_ch_T0000099;gene_id=NA12877_ch_G0000037;Parent=NA12877_ch_T0000099;transcript_name=hg002_chrY_paternal_62.1;gene_name=MIR9985;ID=exon:NA12877_ch_T0000099:0;Name=MIR9985;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	4145267	4145285	1000	+	.	source_transcript=hg002_chrY_paternal_62.2;source_transcript_name=hg002_chrY_paternal_62.1;source_gene=hg002_chrY_paternal_62;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_62;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_62.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_62.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR9985;alternative_source_transcripts=hg002_chrY_paternal_62.2,hg002_chrY_paternal_62.2;transcript_id=NA12877_ch_T0000100;gene_id=NA12877_ch_G0000037;Parent=NA12877_ch_G0000037;transcript_name=hg002_chrY_paternal_62.1;gene_name=MIR9985;ID=NA12877_ch_T0000100;Name=MIR9985
NA12877_chrY	CAT	exon	4145267	4145285	.	+	.	source_transcript=hg002_chrY_paternal_62.2;source_transcript_name=hg002_chrY_paternal_62.1;source_gene=hg002_chrY_paternal_62;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_62;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_62.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_62.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR9985;alternative_source_transcripts=hg002_chrY_paternal_62.2,hg002_chrY_paternal_62.2;transcript_id=NA12877_ch_T0000100;gene_id=NA12877_ch_G0000037;Parent=NA12877_ch_T0000100;transcript_name=hg002_chrY_paternal_62.1;gene_name=MIR9985;ID=exon:NA12877_ch_T0000100:0;Name=MIR9985;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	4539430	5281818	.	+	.	source_gene_common_name=PCDH11Y;source_gene=hg002_chrY_paternal_64;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;gene_id=NA12877_ch_G0000038;gene_biotype=protein_coding;gene_name=PCDH11Y;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000038;Name=PCDH11Y
NA12877_chrY	CAT	transcript	4539430	4644731	100	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_G0000038;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=NA12877_ch_T0000101;Name=PCDH11Y
NA12877_chrY	CAT	exon	4539430	4539739	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000101:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4539740	4570032	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000101:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4570033	4570201	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000101:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4570202	4571039	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000101:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4571040	4571145	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000101:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4571146	4571803	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000101:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4571804	4571862	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000101:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4571831	4571862	.	+	0	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000101:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	4571831	4571833	.	+	0	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:NA12877_ch_T0000101;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4571863	4596022	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000101:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4596023	4596593	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000101:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4596023	4596593	.	+	1	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000101:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4596594	4637347	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000101:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4637348	4639840	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000101:5;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4637348	4639840	.	+	0	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000101:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4639841	4643476	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000101:5;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4643477	4644731	.	+	.	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000101:6;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4643477	4643494	.	+	0	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000101:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	4643492	4643494	.	+	0	source_transcript=hg002_chrY_paternal_64.1;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.1,hg002_chrY_paternal_64.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000101;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000101;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:NA12877_ch_T0000101;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	4539430	4644731	100	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_G0000038;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=NA12877_ch_T0000102;Name=PCDH11Y
NA12877_chrY	CAT	exon	4539430	4539739	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000102:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4539740	4571039	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000102:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4571040	4571145	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000102:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4571146	4571803	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000102:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4571804	4571862	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000102:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4571831	4571862	.	+	0	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000102:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	4571831	4571833	.	+	0	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:NA12877_ch_T0000102;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4571863	4596022	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000102:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4596023	4596593	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000102:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4596023	4596593	.	+	1	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000102:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4596594	4637347	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000102:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4637348	4639840	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000102:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4637348	4639840	.	+	0	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000102:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4639841	4643476	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000102:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4643477	4644731	.	+	.	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000102:5;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4643477	4643494	.	+	0	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000102:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	4643492	4643494	.	+	0	source_transcript=hg002_chrY_paternal_64.2;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.2,hg002_chrY_paternal_64.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000102;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000102;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:NA12877_ch_T0000102;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	4539430	5281814	100	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_G0000038;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=NA12877_ch_T0000103;Name=PCDH11Y
NA12877_chrY	CAT	exon	4539430	4539739	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000103:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4539740	4596022	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000103:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4596023	4596593	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000103:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4596234	4596593	.	+	0	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000103:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	4596234	4596236	.	+	0	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:NA12877_ch_T0000103;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4596594	4637347	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000103:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4637348	4639840	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000103:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4637348	4639840	.	+	0	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000103:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4639841	5040189	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000103:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5040190	5040388	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000103:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5040190	5040388	.	+	0	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000103:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5040389	5121357	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000103:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5121358	5121381	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000103:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5121358	5121381	.	+	2	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000103:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5121382	5276861	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000103:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5276862	5281814	.	+	.	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000103:5;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5276862	5277532	.	+	2	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000103:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	5277530	5277532	.	+	0	source_transcript=hg002_chrY_paternal_64.3;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.3,hg002_chrY_paternal_64.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000103;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000103;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:NA12877_ch_T0000103;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	4539430	5281818	100	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_G0000038;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=NA12877_ch_T0000104;Name=PCDH11Y
NA12877_chrY	CAT	exon	4539430	4539739	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000104:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4539740	4541821	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000104:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4541822	4545869	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000104:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4545870	4570032	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000104:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4570033	4570201	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000104:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4570202	4570348	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000104:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4570349	4570480	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000104:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4570481	4571039	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000104:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4571040	4571145	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000104:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4571146	4571803	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000104:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4571804	4571862	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000104:5;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4571831	4571862	.	+	0	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000104:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	4571831	4571833	.	+	0	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:NA12877_ch_T0000104;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4571863	4596022	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000104:5;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4596023	4596593	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000104:6;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4596023	4596593	.	+	1	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000104:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4596594	4637347	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000104:6;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4637348	4639840	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000104:7;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4637348	4639840	.	+	0	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000104:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4639841	5040189	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000104:7;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5040190	5040388	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000104:8;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5040190	5040388	.	+	0	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000104:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5040389	5121357	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000104:8;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5121358	5121381	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000104:9;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5121358	5121381	.	+	2	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000104:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5121382	5276861	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000104:9;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5276862	5281818	.	+	.	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000104:10;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5276862	5277532	.	+	2	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000104:5;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	5277530	5277532	.	+	0	source_transcript=hg002_chrY_paternal_64.4;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.4,hg002_chrY_paternal_64.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000104;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000104;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:NA12877_ch_T0000104;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	4539430	5281818	100	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_G0000038;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=NA12877_ch_T0000105;Name=PCDH11Y
NA12877_chrY	CAT	exon	4539430	4539739	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000105:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4539740	4570032	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000105:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4570033	4570201	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000105:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4570202	4570348	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000105:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4570349	4570480	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000105:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4570481	4571039	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000105:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4571040	4571145	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000105:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4571146	4571803	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000105:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4571804	4571862	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000105:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4571831	4571862	.	+	0	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000105:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	4571831	4571833	.	+	0	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:NA12877_ch_T0000105;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4571863	4596022	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000105:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4596023	4596593	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000105:5;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4596023	4596593	.	+	1	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000105:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4596594	4637347	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000105:5;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4637348	4639840	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000105:6;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4637348	4639840	.	+	0	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000105:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4639841	5040189	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000105:6;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5040190	5040388	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000105:7;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5040190	5040388	.	+	0	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000105:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5040389	5121357	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000105:7;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5121358	5121381	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000105:8;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5121358	5121381	.	+	2	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000105:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5121382	5276861	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000105:8;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5276862	5281818	.	+	.	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000105:9;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5276862	5277532	.	+	2	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000105:5;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	5277530	5277532	.	+	0	source_transcript=hg002_chrY_paternal_64.5;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.5,hg002_chrY_paternal_64.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000105;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000105;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:NA12877_ch_T0000105;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	4539430	5281818	100	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_G0000038;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=NA12877_ch_T0000106;Name=PCDH11Y
NA12877_chrY	CAT	exon	4539430	4539739	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000106:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4539740	4541821	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000106:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4541822	4541892	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000106:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4541893	4571039	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000106:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4571040	4571145	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000106:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4571146	4571803	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000106:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4571804	4571862	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000106:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4571831	4571862	.	+	0	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000106:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	4571831	4571833	.	+	0	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:NA12877_ch_T0000106;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4571863	4596022	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000106:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4596023	4596593	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000106:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4596023	4596593	.	+	1	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000106:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4596594	4637347	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000106:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4637348	4639840	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000106:5;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4637348	4639840	.	+	0	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000106:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4639841	5040189	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000106:5;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5040190	5040388	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000106:6;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5040190	5040388	.	+	0	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000106:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5040389	5121357	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000106:6;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5121358	5121381	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000106:7;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5121358	5121381	.	+	2	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000106:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5121382	5276861	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000106:7;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5276862	5281818	.	+	.	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000106:8;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5276862	5277532	.	+	2	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000106:5;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	5277530	5277532	.	+	0	source_transcript=hg002_chrY_paternal_64.6;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.6,hg002_chrY_paternal_64.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000106;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000106;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:NA12877_ch_T0000106;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	4595222	4644731	100	+	.	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000107;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_G0000038;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=NA12877_ch_T0000107;Name=PCDH11Y
NA12877_chrY	CAT	exon	4595222	4596593	.	+	.	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000107;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000107;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000107:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4595958	4596593	.	+	0	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000107;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000107;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000107:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	4595958	4595960	.	+	0	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000107;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000107;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:NA12877_ch_T0000107;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4596594	4637347	.	+	.	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000107;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000107;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000107:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4637348	4639840	.	+	.	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000107;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000107;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000107:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4637348	4639840	.	+	0	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000107;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000107;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000107:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4639841	4643476	.	+	.	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000107;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000107;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000107:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4643477	4644731	.	+	.	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000107;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000107;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000107:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4643477	4643494	.	+	0	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000107;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000107;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000107:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	4643492	4643494	.	+	0	source_transcript=hg002_chrY_paternal_64.7;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.7,hg002_chrY_paternal_64.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000107;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000107;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:NA12877_ch_T0000107;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	4595224	5281818	100	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_G0000038;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=NA12877_ch_T0000108;Name=PCDH11Y
NA12877_chrY	CAT	exon	4595224	4596593	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000108:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4595958	4596593	.	+	0	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000108:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	4595958	4595960	.	+	0	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=start_codon:NA12877_ch_T0000108;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4596594	4637347	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000108:0;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	4637348	4639840	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000108:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	4637348	4639840	.	+	0	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000108:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	4639841	5040189	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000108:1;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5040190	5040388	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000108:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5040190	5040388	.	+	0	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000108:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5040389	5121357	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000108:2;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5121358	5121381	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000108:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5121358	5121381	.	+	2	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000108:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5121382	5276861	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=intron:NA12877_ch_T0000108:3;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5276862	5281818	.	+	.	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=exon:NA12877_ch_T0000108:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5276862	5277532	.	+	2	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=CDS:NA12877_ch_T0000108:4;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	5277530	5277532	.	+	0	source_transcript=hg002_chrY_paternal_64.8;source_transcript_name=hg002_chrY_paternal_64.8;source_gene=hg002_chrY_paternal_64;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_64;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_64.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_64.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=hg002_chrY_paternal_64.8,hg002_chrY_paternal_64.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000108;gene_id=NA12877_ch_G0000038;Parent=NA12877_ch_T0000108;transcript_name=hg002_chrY_paternal_64.8;gene_name=PCDH11Y;ID=stop_codon:NA12877_ch_T0000108;Name=PCDH11Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	5782037	5783201	.	-	.	source_gene_common_name=TTTY23;source_gene=hg002_chrY_paternal_73;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;gene_id=NA12877_ch_G0000039;gene_biotype=lncRNA;gene_name=TTTY23;gene_sources=liftoff;ID=NA12877_ch_G0000039;Name=TTTY23
NA12877_chrY	CAT	transcript	5782037	5783201	1000	-	.	source_transcript=hg002_chrY_paternal_73.1;source_transcript_name=hg002_chrY_paternal_73.1;source_gene=hg002_chrY_paternal_73;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_73;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_73.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_73.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;transcript_id=NA12877_ch_T0000109;gene_id=NA12877_ch_G0000039;Parent=NA12877_ch_G0000039;transcript_name=hg002_chrY_paternal_73.1;gene_name=TTTY23;ID=NA12877_ch_T0000109;Name=TTTY23
NA12877_chrY	CAT	exon	5782037	5782345	.	-	.	source_transcript=hg002_chrY_paternal_73.1;source_transcript_name=hg002_chrY_paternal_73.1;source_gene=hg002_chrY_paternal_73;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_73;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_73.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_73.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;transcript_id=NA12877_ch_T0000109;gene_id=NA12877_ch_G0000039;Parent=NA12877_ch_T0000109;transcript_name=hg002_chrY_paternal_73.1;gene_name=TTTY23;ID=exon:NA12877_ch_T0000109:0;Name=TTTY23;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5782346	5782885	.	-	.	source_transcript=hg002_chrY_paternal_73.1;source_transcript_name=hg002_chrY_paternal_73.1;source_gene=hg002_chrY_paternal_73;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_73;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_73.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_73.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;transcript_id=NA12877_ch_T0000109;gene_id=NA12877_ch_G0000039;Parent=NA12877_ch_T0000109;transcript_name=hg002_chrY_paternal_73.1;gene_name=TTTY23;ID=intron:NA12877_ch_T0000109:0;Name=TTTY23;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5782886	5783031	.	-	.	source_transcript=hg002_chrY_paternal_73.1;source_transcript_name=hg002_chrY_paternal_73.1;source_gene=hg002_chrY_paternal_73;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_73;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_73.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_73.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;transcript_id=NA12877_ch_T0000109;gene_id=NA12877_ch_G0000039;Parent=NA12877_ch_T0000109;transcript_name=hg002_chrY_paternal_73.1;gene_name=TTTY23;ID=exon:NA12877_ch_T0000109:1;Name=TTTY23;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5783032	5783144	.	-	.	source_transcript=hg002_chrY_paternal_73.1;source_transcript_name=hg002_chrY_paternal_73.1;source_gene=hg002_chrY_paternal_73;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_73;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_73.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_73.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;transcript_id=NA12877_ch_T0000109;gene_id=NA12877_ch_G0000039;Parent=NA12877_ch_T0000109;transcript_name=hg002_chrY_paternal_73.1;gene_name=TTTY23;ID=intron:NA12877_ch_T0000109:1;Name=TTTY23;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5783145	5783201	.	-	.	source_transcript=hg002_chrY_paternal_73.1;source_transcript_name=hg002_chrY_paternal_73.1;source_gene=hg002_chrY_paternal_73;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_73;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_73.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_73.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;alternative_source_transcripts=hg002_chrY_paternal_73.1,hg002_chrY_paternal_73.1;transcript_id=NA12877_ch_T0000109;gene_id=NA12877_ch_G0000039;Parent=NA12877_ch_T0000109;transcript_name=hg002_chrY_paternal_73.1;gene_name=TTTY23;ID=exon:NA12877_ch_T0000109:2;Name=TTTY23;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	5785814	5788609	.	+	.	source_gene_common_name=TSPY2;source_gene=hg002_chrY_paternal_256;gene_id=NA12877_ch_G0000040;gene_biotype=protein_coding;gene_name=TSPY2;gene_sources=liftoff;ID=NA12877_ch_G0000040;Name=TSPY2
NA12877_chrY	CAT	transcript	5785814	5788609	100	+	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_G0000040;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=NA12877_ch_T0000110;Name=TSPY2
NA12877_chrY	CAT	exon	5785814	5786345	.	+	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000110:0;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5785860	5786345	.	+	0	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000110:0;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	5785860	5785862	.	+	0	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=start_codon:NA12877_ch_T0000110;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5786346	5786946	.	+	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000110:0;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5786947	5787024	.	+	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000110:1;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5786947	5787024	.	+	0	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000110:1;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787025	5787152	.	+	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000110:1;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5787153	5787264	.	+	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000110:2;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5787153	5787264	.	+	0	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000110:2;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787265	5787372	.	+	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000110:2;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5787373	5787511	.	+	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000110:3;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5787373	5787511	.	+	2	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000110:3;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787512	5787617	.	+	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000110:3;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5787618	5787699	.	+	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000110:4;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5787618	5787669	.	+	1	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000110:4;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	5787667	5787669	.	+	0	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=stop_codon:NA12877_ch_T0000110;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787700	5788393	.	+	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000110:4;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5788394	5788609	.	+	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000110;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000110;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000110:5;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	5785814	5788609	100	+	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_G0000040;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=NA12877_ch_T0000111;Name=TSPY2
NA12877_chrY	CAT	exon	5785814	5786345	.	+	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000111:0;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5785860	5786345	.	+	0	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000111:0;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	5785860	5785862	.	+	0	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=start_codon:NA12877_ch_T0000111;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5786346	5786946	.	+	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000111:0;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5786947	5787024	.	+	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000111:1;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5786947	5787024	.	+	0	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000111:1;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787025	5787152	.	+	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000111:1;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5787153	5787264	.	+	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000111:2;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5787153	5787264	.	+	0	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000111:2;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787265	5787365	.	+	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000111:2;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5787366	5787511	.	+	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000111:3;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5787366	5787511	.	+	2	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000111:3;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787512	5787617	.	+	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000111:3;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5787618	5787699	.	+	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000111:4;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5787618	5787699	.	+	0	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000111:4;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787700	5788393	.	+	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000111:4;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5788394	5788609	.	+	.	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000111:5;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5788394	5788416	.	+	2	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000111:5;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	5788414	5788416	.	+	0	source_transcript=hg002_chrY_paternal_256.1;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000111;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000111;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=stop_codon:NA12877_ch_T0000111;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	5785814	5788609	100	+	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_G0000040;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=NA12877_ch_T0000112;Name=TSPY2
NA12877_chrY	CAT	exon	5785814	5786345	.	+	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000112:0;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5785860	5786345	.	+	0	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000112:0;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	5785860	5785862	.	+	0	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=start_codon:NA12877_ch_T0000112;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5786346	5786946	.	+	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000112:0;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5786947	5787024	.	+	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000112:1;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5786947	5787024	.	+	0	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000112:1;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787025	5787152	.	+	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000112:1;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5787153	5787264	.	+	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000112:2;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5787153	5787264	.	+	0	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000112:2;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787265	5787365	.	+	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000112:2;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5787366	5787511	.	+	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000112:3;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5787366	5787511	.	+	2	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000112:3;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787512	5787606	.	+	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000112:3;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5787607	5787699	.	+	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000112:4;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	5787607	5787669	.	+	0	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000112:4;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	5787667	5787669	.	+	0	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=stop_codon:NA12877_ch_T0000112;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787700	5788393	.	+	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=intron:NA12877_ch_T0000112:4;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5788394	5788609	.	+	.	source_transcript=hg002_chrY_paternal_256.2;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000112;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000112;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000112:5;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	5785814	5788609	1000	+	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000113;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_G0000040;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=NA12877_ch_T0000113;Name=TSPY2
NA12877_chrY	CAT	exon	5785814	5786345	.	+	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000113;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000113;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=exon:NA12877_ch_T0000113:0;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5786346	5786946	.	+	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000113;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000113;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=intron:NA12877_ch_T0000113:0;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5786947	5787024	.	+	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000113;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000113;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=exon:NA12877_ch_T0000113:1;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787025	5787152	.	+	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000113;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000113;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=intron:NA12877_ch_T0000113:1;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5787153	5787264	.	+	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000113;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000113;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=exon:NA12877_ch_T0000113:2;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787265	5787372	.	+	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000113;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000113;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=intron:NA12877_ch_T0000113:2;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5787373	5787511	.	+	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000113;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000113;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=exon:NA12877_ch_T0000113:3;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787512	5787606	.	+	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000113;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000113;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=intron:NA12877_ch_T0000113:3;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5787607	5787699	.	+	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000113;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000113;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=exon:NA12877_ch_T0000113:4;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5787700	5788393	.	+	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000113;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000113;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=intron:NA12877_ch_T0000113:4;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5788394	5788609	.	+	.	source_transcript=hg002_chrY_paternal_256.4;source_transcript_name=hg002_chrY_paternal_256.1;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_256.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_256.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=NA12877_ch_T0000113;gene_id=NA12877_ch_G0000040;Parent=NA12877_ch_T0000113;transcript_name=hg002_chrY_paternal_256.1;gene_name=TSPY2;ID=exon:NA12877_ch_T0000113:5;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	5797924	5803527	.	-	.	source_gene_common_name=FAM197Y9;source_gene=hg002_chrY_paternal_255;gene_id=NA12877_ch_G0000041;gene_biotype=lncRNA;gene_name=FAM197Y9;gene_sources=liftoff;ID=NA12877_ch_G0000041;Name=FAM197Y9
NA12877_chrY	CAT	transcript	5797924	5803527	1000	-	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=NA12877_ch_T0000114;gene_id=NA12877_ch_G0000041;Parent=NA12877_ch_G0000041;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=NA12877_ch_T0000114;Name=FAM197Y9
NA12877_chrY	CAT	exon	5797924	5797983	.	-	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=NA12877_ch_T0000114;gene_id=NA12877_ch_G0000041;Parent=NA12877_ch_T0000114;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=exon:NA12877_ch_T0000114:0;Name=FAM197Y9;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5797984	5801534	.	-	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=NA12877_ch_T0000114;gene_id=NA12877_ch_G0000041;Parent=NA12877_ch_T0000114;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=intron:NA12877_ch_T0000114:0;Name=FAM197Y9;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5801535	5801693	.	-	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=NA12877_ch_T0000114;gene_id=NA12877_ch_G0000041;Parent=NA12877_ch_T0000114;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=exon:NA12877_ch_T0000114:1;Name=FAM197Y9;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5801694	5803193	.	-	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=NA12877_ch_T0000114;gene_id=NA12877_ch_G0000041;Parent=NA12877_ch_T0000114;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=intron:NA12877_ch_T0000114:1;Name=FAM197Y9;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5803194	5803339	.	-	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=NA12877_ch_T0000114;gene_id=NA12877_ch_G0000041;Parent=NA12877_ch_T0000114;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=exon:NA12877_ch_T0000114:2;Name=FAM197Y9;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5803340	5803425	.	-	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=NA12877_ch_T0000114;gene_id=NA12877_ch_G0000041;Parent=NA12877_ch_T0000114;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=intron:NA12877_ch_T0000114:2;Name=FAM197Y9;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5803426	5803527	.	-	.	source_transcript=hg002_chrY_paternal_255.1;source_transcript_name=hg002_chrY_paternal_255.1;source_gene=hg002_chrY_paternal_255;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_255;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_255.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_255.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=NA12877_ch_T0000114;gene_id=NA12877_ch_G0000041;Parent=NA12877_ch_T0000114;transcript_name=hg002_chrY_paternal_255.1;gene_name=FAM197Y9;ID=exon:NA12877_ch_T0000114:3;Name=FAM197Y9;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	5896810	5901016	.	-	.	source_gene_common_name=LINC00280;source_gene=hg002_chrY_paternal_251;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;gene_id=NA12877_ch_G0000042;gene_biotype=lncRNA;gene_name=LINC00280;gene_sources=liftoff;ID=NA12877_ch_G0000042;Name=LINC00280
NA12877_chrY	CAT	transcript	5896810	5901016	1000	-	.	source_transcript=hg002_chrY_paternal_251.1;source_transcript_name=hg002_chrY_paternal_251.1;source_gene=hg002_chrY_paternal_251;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_251;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_251.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_251.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;transcript_id=NA12877_ch_T0000115;gene_id=NA12877_ch_G0000042;Parent=NA12877_ch_G0000042;transcript_name=hg002_chrY_paternal_251.1;gene_name=LINC00280;ID=NA12877_ch_T0000115;Name=LINC00280
NA12877_chrY	CAT	exon	5896810	5897028	.	-	.	source_transcript=hg002_chrY_paternal_251.1;source_transcript_name=hg002_chrY_paternal_251.1;source_gene=hg002_chrY_paternal_251;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_251;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_251.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_251.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;transcript_id=NA12877_ch_T0000115;gene_id=NA12877_ch_G0000042;Parent=NA12877_ch_T0000115;transcript_name=hg002_chrY_paternal_251.1;gene_name=LINC00280;ID=exon:NA12877_ch_T0000115:0;Name=LINC00280;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5897029	5898286	.	-	.	source_transcript=hg002_chrY_paternal_251.1;source_transcript_name=hg002_chrY_paternal_251.1;source_gene=hg002_chrY_paternal_251;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_251;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_251.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_251.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;transcript_id=NA12877_ch_T0000115;gene_id=NA12877_ch_G0000042;Parent=NA12877_ch_T0000115;transcript_name=hg002_chrY_paternal_251.1;gene_name=LINC00280;ID=intron:NA12877_ch_T0000115:0;Name=LINC00280;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5898287	5898429	.	-	.	source_transcript=hg002_chrY_paternal_251.1;source_transcript_name=hg002_chrY_paternal_251.1;source_gene=hg002_chrY_paternal_251;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_251;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_251.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_251.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;transcript_id=NA12877_ch_T0000115;gene_id=NA12877_ch_G0000042;Parent=NA12877_ch_T0000115;transcript_name=hg002_chrY_paternal_251.1;gene_name=LINC00280;ID=exon:NA12877_ch_T0000115:1;Name=LINC00280;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5898430	5900930	.	-	.	source_transcript=hg002_chrY_paternal_251.1;source_transcript_name=hg002_chrY_paternal_251.1;source_gene=hg002_chrY_paternal_251;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_251;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_251.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_251.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;transcript_id=NA12877_ch_T0000115;gene_id=NA12877_ch_G0000042;Parent=NA12877_ch_T0000115;transcript_name=hg002_chrY_paternal_251.1;gene_name=LINC00280;ID=intron:NA12877_ch_T0000115:1;Name=LINC00280;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5900931	5901016	.	-	.	source_transcript=hg002_chrY_paternal_251.1;source_transcript_name=hg002_chrY_paternal_251.1;source_gene=hg002_chrY_paternal_251;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_251;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_251.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_251.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_77.1,hg002_chrY_paternal_77.1;transcript_id=NA12877_ch_T0000115;gene_id=NA12877_ch_G0000042;Parent=NA12877_ch_T0000115;transcript_name=hg002_chrY_paternal_251.1;gene_name=LINC00280;ID=exon:NA12877_ch_T0000115:2;Name=LINC00280;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	5901086	5903172	.	-	.	source_gene_common_name=TTTY22;source_gene=hg002_chrY_paternal_78;alternative_source_transcripts=hg002_chrY_paternal_78.1;gene_id=NA12877_ch_G0000043;gene_biotype=lncRNA;gene_name=TTTY22;gene_sources=transMap;ID=NA12877_ch_G0000043;Name=TTTY22
NA12877_chrY	CAT	transcript	5901086	5903172	1000	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=94.146;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1;transcript_id=NA12877_ch_T0000116;gene_id=NA12877_ch_G0000043;Parent=NA12877_ch_G0000043;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=NA12877_ch_T0000116;Name=TTTY22
NA12877_chrY	CAT	exon	5901086	5901131	.	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=94.146;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1;transcript_id=NA12877_ch_T0000116;gene_id=NA12877_ch_G0000043;Parent=NA12877_ch_T0000116;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=exon:NA12877_ch_T0000116:0;Name=TTTY22;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5901132	5903017	.	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=94.146;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1;transcript_id=NA12877_ch_T0000116;gene_id=NA12877_ch_G0000043;Parent=NA12877_ch_T0000116;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=intron:NA12877_ch_T0000116:0;Name=TTTY22;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5903018	5903172	.	-	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=94.146;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;alternative_source_transcripts=hg002_chrY_paternal_78.1;transcript_id=NA12877_ch_T0000116;gene_id=NA12877_ch_G0000043;Parent=NA12877_ch_T0000116;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=exon:NA12877_ch_T0000116:1;Name=TTTY22;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	5906114	5909525	.	-	.	source_gene_common_name=LOC107987353;source_gene=hg002_chrY_paternal_250;gene_id=NA12877_ch_G0000044;gene_biotype=lncRNA;gene_name=LOC107987353;gene_sources=liftoff;ID=NA12877_ch_G0000044;Name=LOC107987353
NA12877_chrY	CAT	transcript	5906114	5909525	1000	-	.	source_transcript=hg002_chrY_paternal_250.1;source_transcript_name=hg002_chrY_paternal_250.1;source_gene=hg002_chrY_paternal_250;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_250;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_250.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_250.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987353;transcript_id=NA12877_ch_T0000117;gene_id=NA12877_ch_G0000044;Parent=NA12877_ch_G0000044;transcript_name=hg002_chrY_paternal_250.1;gene_name=LOC107987353;ID=NA12877_ch_T0000117;Name=LOC107987353
NA12877_chrY	CAT	exon	5906114	5906376	.	-	.	source_transcript=hg002_chrY_paternal_250.1;source_transcript_name=hg002_chrY_paternal_250.1;source_gene=hg002_chrY_paternal_250;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_250;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_250.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_250.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987353;transcript_id=NA12877_ch_T0000117;gene_id=NA12877_ch_G0000044;Parent=NA12877_ch_T0000117;transcript_name=hg002_chrY_paternal_250.1;gene_name=LOC107987353;ID=exon:NA12877_ch_T0000117:0;Name=LOC107987353;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5906377	5908907	.	-	.	source_transcript=hg002_chrY_paternal_250.1;source_transcript_name=hg002_chrY_paternal_250.1;source_gene=hg002_chrY_paternal_250;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_250;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_250.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_250.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987353;transcript_id=NA12877_ch_T0000117;gene_id=NA12877_ch_G0000044;Parent=NA12877_ch_T0000117;transcript_name=hg002_chrY_paternal_250.1;gene_name=LOC107987353;ID=intron:NA12877_ch_T0000117:0;Name=LOC107987353;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5908908	5908980	.	-	.	source_transcript=hg002_chrY_paternal_250.1;source_transcript_name=hg002_chrY_paternal_250.1;source_gene=hg002_chrY_paternal_250;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_250;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_250.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_250.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987353;transcript_id=NA12877_ch_T0000117;gene_id=NA12877_ch_G0000044;Parent=NA12877_ch_T0000117;transcript_name=hg002_chrY_paternal_250.1;gene_name=LOC107987353;ID=exon:NA12877_ch_T0000117:1;Name=LOC107987353;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5908981	5909356	.	-	.	source_transcript=hg002_chrY_paternal_250.1;source_transcript_name=hg002_chrY_paternal_250.1;source_gene=hg002_chrY_paternal_250;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_250;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_250.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_250.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987353;transcript_id=NA12877_ch_T0000117;gene_id=NA12877_ch_G0000044;Parent=NA12877_ch_T0000117;transcript_name=hg002_chrY_paternal_250.1;gene_name=LOC107987353;ID=intron:NA12877_ch_T0000117:1;Name=LOC107987353;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5909357	5909525	.	-	.	source_transcript=hg002_chrY_paternal_250.1;source_transcript_name=hg002_chrY_paternal_250.1;source_gene=hg002_chrY_paternal_250;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_250;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_250.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_250.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987353;transcript_id=NA12877_ch_T0000117;gene_id=NA12877_ch_G0000044;Parent=NA12877_ch_T0000117;transcript_name=hg002_chrY_paternal_250.1;gene_name=LOC107987353;ID=exon:NA12877_ch_T0000117:2;Name=LOC107987353;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	5930006	5951169	.	+	.	source_gene_common_name=TTTY1B;source_gene=hg002_chrY_paternal_249;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;gene_id=NA12877_ch_G0000045;gene_biotype=lncRNA;gene_name=TTTY1B;gene_sources=liftoff;ID=NA12877_ch_G0000045;Name=TTTY1B
NA12877_chrY	CAT	transcript	5930006	5951169	1000	+	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=NA12877_ch_T0000118;gene_id=NA12877_ch_G0000045;Parent=NA12877_ch_G0000045;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=NA12877_ch_T0000118;Name=TTTY1B
NA12877_chrY	CAT	exon	5930006	5930280	.	+	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=NA12877_ch_T0000118;gene_id=NA12877_ch_G0000045;Parent=NA12877_ch_T0000118;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=exon:NA12877_ch_T0000118:0;Name=TTTY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5930281	5933704	.	+	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=NA12877_ch_T0000118;gene_id=NA12877_ch_G0000045;Parent=NA12877_ch_T0000118;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=intron:NA12877_ch_T0000118:0;Name=TTTY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5933705	5933864	.	+	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=NA12877_ch_T0000118;gene_id=NA12877_ch_G0000045;Parent=NA12877_ch_T0000118;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=exon:NA12877_ch_T0000118:1;Name=TTTY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5933865	5940727	.	+	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=NA12877_ch_T0000118;gene_id=NA12877_ch_G0000045;Parent=NA12877_ch_T0000118;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=intron:NA12877_ch_T0000118:1;Name=TTTY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5940728	5940836	.	+	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=NA12877_ch_T0000118;gene_id=NA12877_ch_G0000045;Parent=NA12877_ch_T0000118;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=exon:NA12877_ch_T0000118:2;Name=TTTY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5940837	5943192	.	+	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=NA12877_ch_T0000118;gene_id=NA12877_ch_G0000045;Parent=NA12877_ch_T0000118;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=intron:NA12877_ch_T0000118:2;Name=TTTY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5943193	5943330	.	+	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=NA12877_ch_T0000118;gene_id=NA12877_ch_G0000045;Parent=NA12877_ch_T0000118;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=exon:NA12877_ch_T0000118:3;Name=TTTY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5943331	5950911	.	+	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=NA12877_ch_T0000118;gene_id=NA12877_ch_G0000045;Parent=NA12877_ch_T0000118;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=intron:NA12877_ch_T0000118:3;Name=TTTY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5950912	5951169	.	+	.	source_transcript=hg002_chrY_paternal_249.1;source_transcript_name=hg002_chrY_paternal_249.1;source_gene=hg002_chrY_paternal_249;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_249;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_249.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_249.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=hg002_chrY_paternal_80.1,hg002_chrY_paternal_80.1;transcript_id=NA12877_ch_T0000118;gene_id=NA12877_ch_G0000045;Parent=NA12877_ch_T0000118;transcript_name=hg002_chrY_paternal_249.1;gene_name=TTTY1B;ID=exon:NA12877_ch_T0000118:4;Name=TTTY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	5945849	5968050	.	-	.	source_gene_common_name=TTTY2;source_gene=hg002_chrY_paternal_248;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;gene_id=NA12877_ch_G0000046;gene_biotype=lncRNA;gene_name=TTTY2;gene_sources=liftoff;ID=NA12877_ch_G0000046;Name=TTTY2
NA12877_chrY	CAT	transcript	5945849	5968050	1000	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_G0000046;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=NA12877_ch_T0000119;Name=TTTY2
NA12877_chrY	CAT	exon	5945849	5946528	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:NA12877_ch_T0000119:0;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5946529	5947751	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:NA12877_ch_T0000119:0;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5947752	5947949	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:NA12877_ch_T0000119:1;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5947950	5948069	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:NA12877_ch_T0000119:1;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5948070	5948148	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:NA12877_ch_T0000119:2;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5948149	5950978	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:NA12877_ch_T0000119:2;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5950979	5951135	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:NA12877_ch_T0000119:3;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5951136	5951827	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:NA12877_ch_T0000119:3;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5951828	5951976	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:NA12877_ch_T0000119:4;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5951977	5959370	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:NA12877_ch_T0000119:4;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5959371	5959457	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:NA12877_ch_T0000119:5;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5959458	5961933	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:NA12877_ch_T0000119:5;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5961934	5962011	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:NA12877_ch_T0000119:6;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5962012	5967845	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=intron:NA12877_ch_T0000119:6;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5967846	5968050	.	-	.	source_transcript=hg002_chrY_paternal_248.1;source_transcript_name=hg002_chrY_paternal_248.1;source_gene=hg002_chrY_paternal_248;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_248;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_248.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=hg002_chrY_paternal_81.1,hg002_chrY_paternal_81.1;transcript_id=NA12877_ch_T0000119;gene_id=NA12877_ch_G0000046;Parent=NA12877_ch_T0000119;transcript_name=hg002_chrY_paternal_248.1;gene_name=TTTY2;ID=exon:NA12877_ch_T0000119:7;Name=TTTY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	5983040	5986683	.	+	.	source_gene_common_name=TTTY21;source_gene=hg002_chrY_paternal_247;alternative_source_transcripts=hg002_chrY_paternal_82.1,hg002_chrY_paternal_82.1;gene_id=NA12877_ch_G0000047;gene_biotype=lncRNA;gene_name=TTTY21;gene_sources=liftoff;ID=NA12877_ch_G0000047;Name=TTTY21
NA12877_chrY	CAT	transcript	5983040	5986683	1000	+	.	source_transcript=hg002_chrY_paternal_247.1;source_transcript_name=hg002_chrY_paternal_247.1;source_gene=hg002_chrY_paternal_247;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_247;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_247.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_247.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21;alternative_source_transcripts=hg002_chrY_paternal_82.1,hg002_chrY_paternal_82.1;transcript_id=NA12877_ch_T0000120;gene_id=NA12877_ch_G0000047;Parent=NA12877_ch_G0000047;transcript_name=hg002_chrY_paternal_247.1;gene_name=TTTY21;ID=NA12877_ch_T0000120;Name=TTTY21
NA12877_chrY	CAT	exon	5983040	5983241	.	+	.	source_transcript=hg002_chrY_paternal_247.1;source_transcript_name=hg002_chrY_paternal_247.1;source_gene=hg002_chrY_paternal_247;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_247;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_247.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_247.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21;alternative_source_transcripts=hg002_chrY_paternal_82.1,hg002_chrY_paternal_82.1;transcript_id=NA12877_ch_T0000120;gene_id=NA12877_ch_G0000047;Parent=NA12877_ch_T0000120;transcript_name=hg002_chrY_paternal_247.1;gene_name=TTTY21;ID=exon:NA12877_ch_T0000120:0;Name=TTTY21;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5983242	5986578	.	+	.	source_transcript=hg002_chrY_paternal_247.1;source_transcript_name=hg002_chrY_paternal_247.1;source_gene=hg002_chrY_paternal_247;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_247;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_247.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_247.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21;alternative_source_transcripts=hg002_chrY_paternal_82.1,hg002_chrY_paternal_82.1;transcript_id=NA12877_ch_T0000120;gene_id=NA12877_ch_G0000047;Parent=NA12877_ch_T0000120;transcript_name=hg002_chrY_paternal_247.1;gene_name=TTTY21;ID=intron:NA12877_ch_T0000120:0;Name=TTTY21;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5986579	5986683	.	+	.	source_transcript=hg002_chrY_paternal_247.1;source_transcript_name=hg002_chrY_paternal_247.1;source_gene=hg002_chrY_paternal_247;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_247;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_247.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_247.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21;alternative_source_transcripts=hg002_chrY_paternal_82.1,hg002_chrY_paternal_82.1;transcript_id=NA12877_ch_T0000120;gene_id=NA12877_ch_G0000047;Parent=NA12877_ch_T0000120;transcript_name=hg002_chrY_paternal_247.1;gene_name=TTTY21;ID=exon:NA12877_ch_T0000120:1;Name=TTTY21;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	5989074	5997512	.	+	.	source_gene_common_name=TTTY7;source_gene=hg002_chrY_paternal_83;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;gene_id=NA12877_ch_G0000048;gene_biotype=lncRNA;gene_name=TTTY7;gene_sources=liftoff;ID=NA12877_ch_G0000048;Name=TTTY7
NA12877_chrY	CAT	transcript	5989074	5997512	1000	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_G0000048;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=NA12877_ch_T0000121;Name=TTTY7
NA12877_chrY	CAT	exon	5989074	5989110	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_T0000121;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:NA12877_ch_T0000121:0;Name=TTTY7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5989111	5990051	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_T0000121;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=intron:NA12877_ch_T0000121:0;Name=TTTY7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5990052	5990213	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_T0000121;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:NA12877_ch_T0000121:1;Name=TTTY7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5990214	5992520	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_T0000121;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=intron:NA12877_ch_T0000121:1;Name=TTTY7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5992521	5992595	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_T0000121;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:NA12877_ch_T0000121:2;Name=TTTY7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5992596	5993283	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_T0000121;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=intron:NA12877_ch_T0000121:2;Name=TTTY7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5993284	5993760	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_T0000121;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:NA12877_ch_T0000121:3;Name=TTTY7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5993761	5995677	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_T0000121;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=intron:NA12877_ch_T0000121:3;Name=TTTY7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5995678	5995791	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_T0000121;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:NA12877_ch_T0000121:4;Name=TTTY7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5995792	5996764	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_T0000121;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=intron:NA12877_ch_T0000121:4;Name=TTTY7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5996765	5997020	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_T0000121;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:NA12877_ch_T0000121:5;Name=TTTY7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	5997021	5997266	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_T0000121;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=intron:NA12877_ch_T0000121:5;Name=TTTY7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	5997267	5997512	.	+	.	source_transcript=hg002_chrY_paternal_83.1;source_transcript_name=hg002_chrY_paternal_83.1;source_gene=hg002_chrY_paternal_83;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_83;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_83.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_83.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=hg002_chrY_paternal_83.1,hg002_chrY_paternal_83.1;transcript_id=NA12877_ch_T0000121;gene_id=NA12877_ch_G0000048;Parent=NA12877_ch_T0000121;transcript_name=hg002_chrY_paternal_83.1;gene_name=TTTY7;ID=exon:NA12877_ch_T0000121:6;Name=TTTY7;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	6010637	6013236	.	-	.	source_gene_common_name=TTTY8B;source_gene=hg002_chrY_paternal_84;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;gene_id=NA12877_ch_G0000049;gene_biotype=lncRNA;gene_name=TTTY8B;gene_sources=liftoff;ID=NA12877_ch_G0000049;Name=TTTY8B
NA12877_chrY	CAT	transcript	6010637	6013236	1000	-	.	source_transcript=hg002_chrY_paternal_84.1;source_transcript_name=hg002_chrY_paternal_84.1;source_gene=hg002_chrY_paternal_84;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_84;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_84.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_84.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;transcript_id=NA12877_ch_T0000122;gene_id=NA12877_ch_G0000049;Parent=NA12877_ch_G0000049;transcript_name=hg002_chrY_paternal_84.1;gene_name=TTTY8B;ID=NA12877_ch_T0000122;Name=TTTY8B
NA12877_chrY	CAT	exon	6010637	6010826	.	-	.	source_transcript=hg002_chrY_paternal_84.1;source_transcript_name=hg002_chrY_paternal_84.1;source_gene=hg002_chrY_paternal_84;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_84;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_84.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_84.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;transcript_id=NA12877_ch_T0000122;gene_id=NA12877_ch_G0000049;Parent=NA12877_ch_T0000122;transcript_name=hg002_chrY_paternal_84.1;gene_name=TTTY8B;ID=exon:NA12877_ch_T0000122:0;Name=TTTY8B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6010827	6012418	.	-	.	source_transcript=hg002_chrY_paternal_84.1;source_transcript_name=hg002_chrY_paternal_84.1;source_gene=hg002_chrY_paternal_84;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_84;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_84.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_84.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;transcript_id=NA12877_ch_T0000122;gene_id=NA12877_ch_G0000049;Parent=NA12877_ch_T0000122;transcript_name=hg002_chrY_paternal_84.1;gene_name=TTTY8B;ID=intron:NA12877_ch_T0000122:0;Name=TTTY8B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6012419	6012623	.	-	.	source_transcript=hg002_chrY_paternal_84.1;source_transcript_name=hg002_chrY_paternal_84.1;source_gene=hg002_chrY_paternal_84;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_84;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_84.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_84.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;transcript_id=NA12877_ch_T0000122;gene_id=NA12877_ch_G0000049;Parent=NA12877_ch_T0000122;transcript_name=hg002_chrY_paternal_84.1;gene_name=TTTY8B;ID=exon:NA12877_ch_T0000122:1;Name=TTTY8B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6012624	6013100	.	-	.	source_transcript=hg002_chrY_paternal_84.1;source_transcript_name=hg002_chrY_paternal_84.1;source_gene=hg002_chrY_paternal_84;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_84;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_84.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_84.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;transcript_id=NA12877_ch_T0000122;gene_id=NA12877_ch_G0000049;Parent=NA12877_ch_T0000122;transcript_name=hg002_chrY_paternal_84.1;gene_name=TTTY8B;ID=intron:NA12877_ch_T0000122:1;Name=TTTY8B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6013101	6013236	.	-	.	source_transcript=hg002_chrY_paternal_84.1;source_transcript_name=hg002_chrY_paternal_84.1;source_gene=hg002_chrY_paternal_84;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_84;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_84.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_84.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=hg002_chrY_paternal_84.1,hg002_chrY_paternal_84.1;transcript_id=NA12877_ch_T0000122;gene_id=NA12877_ch_G0000049;Parent=NA12877_ch_T0000122;transcript_name=hg002_chrY_paternal_84.1;gene_name=TTTY8B;ID=exon:NA12877_ch_T0000122:2;Name=TTTY8B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	6405548	6451382	.	-	.	source_gene_common_name=AMELY;source_gene=hg002_chrY_paternal_88;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;gene_id=NA12877_ch_G0000050;gene_biotype=protein_coding;gene_name=AMELY;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000050;Name=AMELY
NA12877_chrY	CAT	transcript	6405548	6413657	100	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_G0000050;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=NA12877_ch_T0000123;Name=AMELY
NA12877_chrY	CAT	exon	6405548	6405708	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000123:0;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6405703	6405708	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:NA12877_ch_T0000123:0;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6405703	6405705	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=stop_codon:NA12877_ch_T0000123;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6405709	6407666	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:NA12877_ch_T0000123:0;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6407667	6408092	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000123:1;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6407667	6408092	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:NA12877_ch_T0000123:1;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6408093	6408361	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:NA12877_ch_T0000123:1;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6408362	6408406	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000123:2;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6408362	6408406	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:NA12877_ch_T0000123:2;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6408407	6408497	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:NA12877_ch_T0000123:2;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6408498	6408539	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000123:3;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6408498	6408539	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:NA12877_ch_T0000123:3;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6408540	6409635	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:NA12877_ch_T0000123:3;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6409636	6409683	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000123:4;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6409636	6409683	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:NA12877_ch_T0000123:4;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6409684	6412184	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:NA12877_ch_T0000123:4;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6412185	6412250	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000123:5;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6412185	6412238	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:NA12877_ch_T0000123:5;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6412236	6412238	.	-	0	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=start_codon:NA12877_ch_T0000123;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6412251	6413601	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:NA12877_ch_T0000123:5;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6413602	6413657	.	-	.	source_transcript=hg002_chrY_paternal_88.1;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.1,hg002_chrY_paternal_88.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000123;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000123;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000123:6;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	6405548	6451382	100	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_G0000050;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=NA12877_ch_T0000124;Name=AMELY
NA12877_chrY	CAT	exon	6405548	6405708	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000124:0;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6405703	6405708	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:NA12877_ch_T0000124:0;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6405703	6405705	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=stop_codon:NA12877_ch_T0000124;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6405709	6407666	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:NA12877_ch_T0000124:0;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6407667	6408092	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000124:1;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6407667	6408092	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:NA12877_ch_T0000124:1;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6408093	6408361	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:NA12877_ch_T0000124:1;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6408362	6408406	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000124:2;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6408362	6408406	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:NA12877_ch_T0000124:2;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6408407	6409635	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:NA12877_ch_T0000124:2;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6409636	6409683	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000124:3;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6409636	6409683	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:NA12877_ch_T0000124:3;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6409684	6412184	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:NA12877_ch_T0000124:3;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6412185	6412250	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000124:4;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6412185	6412238	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=CDS:NA12877_ch_T0000124:4;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6412236	6412238	.	-	0	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=start_codon:NA12877_ch_T0000124;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6412251	6413601	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:NA12877_ch_T0000124:4;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6413602	6413701	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000124:5;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6413702	6451302	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=intron:NA12877_ch_T0000124:5;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6451303	6451382	.	-	.	source_transcript=hg002_chrY_paternal_88.2;source_transcript_name=hg002_chrY_paternal_88.2;source_gene=hg002_chrY_paternal_88;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_88;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_88.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_88.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=hg002_chrY_paternal_88.2,hg002_chrY_paternal_88.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000124;gene_id=NA12877_ch_G0000050;Parent=NA12877_ch_T0000124;transcript_name=hg002_chrY_paternal_88.2;gene_name=AMELY;ID=exon:NA12877_ch_T0000124:6;Name=AMELY;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	6449495	6645326	.	+	.	source_gene_common_name=TBL1Y;source_gene=hg002_chrY_paternal_90;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;gene_id=NA12877_ch_G0000051;gene_biotype=protein_coding;gene_name=TBL1Y;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000051;Name=TBL1Y
NA12877_chrY	CAT	transcript	6449495	6645326	100	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_G0000051;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=NA12877_ch_T0000125;Name=TBL1Y
NA12877_chrY	CAT	exon	6449495	6449733	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6449734	6451717	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6451718	6451802	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6451803	6517842	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6517843	6517873	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6517874	6535438	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6535439	6535533	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6535534	6561083	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6561084	6561172	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6561173	6564669	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6564670	6564777	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6564720	6564777	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6564720	6564722	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:NA12877_ch_T0000125;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6564778	6582613	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6582614	6582759	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6582614	6582759	.	+	2	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6582760	6603534	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6603535	6603787	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6603535	6603787	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6603788	6609833	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6609834	6609966	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6609834	6609966	.	+	2	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6609967	6610357	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6610358	6610499	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6610358	6610499	.	+	1	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6610500	6611197	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611198	6611261	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611198	6611261	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611262	6611370	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611371	6611468	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611371	6611468	.	+	2	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611469	6614197	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6614198	6614258	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6614198	6614258	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6614259	6620369	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6620370	6620491	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6620370	6620491	.	+	2	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6620492	6625535	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625536	6625610	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625536	6625610	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6625611	6625927	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625928	6626055	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625928	6626055	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6626056	6626904	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6626905	6627070	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6626905	6627070	.	+	1	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6627071	6629726	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6629727	6629828	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:17;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6629727	6629828	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6629829	6640422	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000125:17;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6640423	6645326	.	+	.	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000125:18;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6640423	6640608	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000125:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6640606	6640608	.	+	0	source_transcript=hg002_chrY_paternal_90.1;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.1,hg002_chrY_paternal_90.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000125;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000125;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:NA12877_ch_T0000125;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	6450327	6645326	100	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_G0000051;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=NA12877_ch_T0000126;Name=TBL1Y
NA12877_chrY	CAT	exon	6450327	6450612	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6450613	6451717	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6451718	6451802	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6451803	6517842	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6517843	6517873	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6517874	6535438	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6535439	6535533	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6535534	6561083	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6561084	6561172	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6561173	6564669	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6564670	6564777	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6564720	6564777	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6564720	6564722	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:NA12877_ch_T0000126;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6564778	6582613	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6582614	6582759	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6582614	6582759	.	+	2	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6582760	6603534	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6603535	6603787	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6603535	6603787	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6603788	6609833	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6609834	6609966	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6609834	6609966	.	+	2	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6609967	6610357	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6610358	6610499	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6610358	6610499	.	+	1	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6610500	6611197	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611198	6611261	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611198	6611261	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611262	6611370	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611371	6611468	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611371	6611468	.	+	2	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611469	6614197	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6614198	6614258	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6614198	6614258	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6614259	6620369	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6620370	6620491	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6620370	6620491	.	+	2	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6620492	6625535	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625536	6625610	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625536	6625610	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6625611	6625927	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625928	6626055	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625928	6626055	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6626056	6626904	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6626905	6627070	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6626905	6627070	.	+	1	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6627071	6629726	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6629727	6629828	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:17;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6629727	6629828	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6629829	6640422	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000126:17;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6640423	6645326	.	+	.	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000126:18;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6640423	6640608	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000126:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6640606	6640608	.	+	0	source_transcript=hg002_chrY_paternal_90.10;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.10,hg002_chrY_paternal_90.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000126;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000126;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:NA12877_ch_T0000126;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	6450327	6645326	100	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_G0000051;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=NA12877_ch_T0000127;Name=TBL1Y
NA12877_chrY	CAT	exon	6450327	6450612	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6450613	6451717	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6451718	6451802	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6451803	6517842	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6517843	6517873	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6517874	6561083	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6561084	6561172	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6561173	6564669	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6564670	6564777	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6564720	6564777	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6564720	6564722	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:NA12877_ch_T0000127;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6564778	6582613	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6582614	6582759	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6582614	6582759	.	+	2	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6582760	6603534	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6603535	6603787	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6603535	6603787	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6603788	6609833	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6609834	6609966	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6609834	6609966	.	+	2	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6609967	6610357	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6610358	6610499	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6610358	6610499	.	+	1	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6610500	6611197	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611198	6611261	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611198	6611261	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611262	6611370	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611371	6611468	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611371	6611468	.	+	2	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611469	6614197	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6614198	6614258	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6614198	6614258	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6614259	6620369	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6620370	6620491	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6620370	6620491	.	+	2	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6620492	6625535	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625536	6625610	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625536	6625610	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6625611	6625927	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625928	6626055	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625928	6626055	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6626056	6626904	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6626905	6627070	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6626905	6627070	.	+	1	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6627071	6629726	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6629727	6629828	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6629727	6629828	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6629829	6640422	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000127:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6640423	6645326	.	+	.	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000127:17;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6640423	6640608	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000127:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6640606	6640608	.	+	0	source_transcript=hg002_chrY_paternal_90.11;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.11,hg002_chrY_paternal_90.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000127;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000127;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:NA12877_ch_T0000127;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	6450327	6631321	100	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_G0000051;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=NA12877_ch_T0000128;Name=TBL1Y
NA12877_chrY	CAT	exon	6450327	6450612	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6450613	6451717	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6451718	6451802	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6451803	6517842	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6517843	6517873	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6517874	6535438	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6535439	6535533	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6535534	6561083	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6561084	6561172	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6561173	6564669	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6564670	6564777	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6564720	6564777	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6564720	6564722	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:NA12877_ch_T0000128;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6564778	6582613	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6582614	6582759	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6582614	6582759	.	+	2	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6582760	6603534	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6603535	6603787	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6603535	6603787	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6603788	6609833	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6609834	6609966	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6609834	6609966	.	+	2	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6609967	6610357	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6610358	6610499	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6610358	6610499	.	+	1	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6610500	6611197	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611198	6611261	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611198	6611261	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611262	6611370	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611371	6611468	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611371	6611468	.	+	2	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611469	6614197	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6614198	6614258	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6614198	6614258	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6614259	6620369	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6620370	6620491	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6620370	6620491	.	+	2	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6620492	6625535	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625536	6625610	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625536	6625610	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6625611	6625927	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625928	6626055	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625928	6626055	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6626056	6626904	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6626905	6627070	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6626905	6627070	.	+	1	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6627071	6629726	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6629727	6629828	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:17;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6629727	6629828	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6629829	6631109	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000128:17;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6631110	6631321	.	+	.	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000128:18;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6631110	6631130	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000128:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6631128	6631130	.	+	0	source_transcript=hg002_chrY_paternal_90.2;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.2,hg002_chrY_paternal_90.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000128;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000128;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:NA12877_ch_T0000128;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	6450327	6631321	100	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_G0000051;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=NA12877_ch_T0000129;Name=TBL1Y
NA12877_chrY	CAT	exon	6450327	6450612	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6450613	6451717	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6451718	6451802	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6451803	6535438	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6535439	6535533	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6535534	6561083	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6561084	6561172	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6561173	6564669	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6564670	6564777	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6564720	6564777	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6564720	6564722	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:NA12877_ch_T0000129;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6564778	6582613	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6582614	6582759	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6582614	6582759	.	+	2	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6582760	6603534	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6603535	6603787	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6603535	6603787	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6603788	6609833	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6609834	6609966	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6609834	6609966	.	+	2	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6609967	6610357	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6610358	6610499	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6610358	6610499	.	+	1	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6610500	6611197	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611198	6611261	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611198	6611261	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611262	6611370	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611371	6611468	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611371	6611468	.	+	2	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611469	6614197	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6614198	6614258	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6614198	6614258	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6614259	6620369	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6620370	6620491	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6620370	6620491	.	+	2	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6620492	6625535	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625536	6625610	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625536	6625610	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6625611	6625927	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625928	6626055	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625928	6626055	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6626056	6626904	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6626905	6627070	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6626905	6627070	.	+	1	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6627071	6629726	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6629727	6629828	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6629727	6629828	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6629829	6631109	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000129:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6631110	6631321	.	+	.	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000129:17;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6631110	6631130	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000129:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6631128	6631130	.	+	0	source_transcript=hg002_chrY_paternal_90.3;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.3,hg002_chrY_paternal_90.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000129;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000129;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:NA12877_ch_T0000129;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	6450327	6631321	100	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_G0000051;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=NA12877_ch_T0000130;Name=TBL1Y
NA12877_chrY	CAT	exon	6450327	6450612	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6450613	6451717	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6451718	6451802	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6451803	6517842	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6517843	6517873	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6517874	6561083	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6561084	6561172	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6561173	6564669	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6564670	6564777	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6564720	6564777	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6564720	6564722	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:NA12877_ch_T0000130;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6564778	6582613	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6582614	6582759	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6582614	6582759	.	+	2	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6582760	6603534	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6603535	6603787	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6603535	6603787	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6603788	6609833	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6609834	6609966	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6609834	6609966	.	+	2	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6609967	6610357	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6610358	6610499	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6610358	6610499	.	+	1	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6610500	6611197	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611198	6611261	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611198	6611261	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611262	6611370	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611371	6611468	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611371	6611468	.	+	2	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611469	6614197	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6614198	6614258	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6614198	6614258	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6614259	6620369	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6620370	6620491	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6620370	6620491	.	+	2	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6620492	6625535	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625536	6625610	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625536	6625610	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6625611	6625927	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625928	6626055	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625928	6626055	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6626056	6626904	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6626905	6627070	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6626905	6627070	.	+	1	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6627071	6629726	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6629727	6629828	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6629727	6629828	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6629829	6631109	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000130:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6631110	6631321	.	+	.	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000130:17;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6631110	6631130	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000130:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6631128	6631130	.	+	0	source_transcript=hg002_chrY_paternal_90.4;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.4,hg002_chrY_paternal_90.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000130;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000130;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:NA12877_ch_T0000130;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	6450327	6631321	100	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_G0000051;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=NA12877_ch_T0000131;Name=TBL1Y
NA12877_chrY	CAT	exon	6450327	6450612	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6450613	6561083	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6561084	6561172	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6561173	6564669	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6564670	6564777	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6564720	6564777	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6564720	6564722	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:NA12877_ch_T0000131;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6564778	6582613	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6582614	6582759	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6582614	6582759	.	+	2	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6582760	6603534	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6603535	6603787	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6603535	6603787	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6603788	6609833	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6609834	6609966	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6609834	6609966	.	+	2	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6609967	6610357	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6610358	6610499	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6610358	6610499	.	+	1	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6610500	6611197	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611198	6611261	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611198	6611261	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611262	6611370	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611371	6611468	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611371	6611468	.	+	2	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611469	6614197	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6614198	6614258	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6614198	6614258	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6614259	6620369	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6620370	6620491	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6620370	6620491	.	+	2	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6620492	6625535	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625536	6625610	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625536	6625610	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6625611	6625927	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625928	6626055	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625928	6626055	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6626056	6626904	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6626905	6627070	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6626905	6627070	.	+	1	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6627071	6629726	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6629727	6629828	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6629727	6629828	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6629829	6631109	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000131:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6631110	6631321	.	+	.	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000131:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6631110	6631130	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000131:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6631128	6631130	.	+	0	source_transcript=hg002_chrY_paternal_90.5;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.5,hg002_chrY_paternal_90.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000131;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000131;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:NA12877_ch_T0000131;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	6450327	6645326	100	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_G0000051;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=NA12877_ch_T0000132;Name=TBL1Y
NA12877_chrY	CAT	exon	6450327	6450612	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6450613	6561083	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6561084	6561172	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6561173	6564669	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6564670	6564777	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6564720	6564777	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6564720	6564722	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:NA12877_ch_T0000132;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6564778	6582613	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6582614	6582759	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6582614	6582759	.	+	2	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6582760	6603534	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6603535	6603787	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6603535	6603787	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6603788	6609833	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6609834	6609966	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6609834	6609966	.	+	2	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6609967	6610357	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6610358	6610499	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6610358	6610499	.	+	1	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6610500	6611197	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611198	6611261	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611198	6611261	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611262	6611370	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611371	6611468	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611371	6611468	.	+	2	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611469	6614197	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6614198	6614258	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6614198	6614258	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6614259	6620369	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6620370	6620491	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6620370	6620491	.	+	2	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6620492	6625535	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625536	6625610	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625536	6625610	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6625611	6625927	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625928	6626055	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625928	6626055	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6626056	6626904	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6626905	6627070	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6626905	6627070	.	+	1	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6627071	6629726	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6629727	6629828	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6629727	6629828	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6629829	6640422	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000132:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6640423	6645326	.	+	.	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000132:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6640423	6640608	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000132:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6640606	6640608	.	+	0	source_transcript=hg002_chrY_paternal_90.6;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.6,hg002_chrY_paternal_90.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000132;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000132;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:NA12877_ch_T0000132;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	6450327	6645326	100	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_G0000051;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=NA12877_ch_T0000133;Name=TBL1Y
NA12877_chrY	CAT	exon	6450327	6450612	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6450613	6451717	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6451718	6451802	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6451803	6517842	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6517843	6517873	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6517874	6561083	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6561084	6561172	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6561173	6564669	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6564670	6564777	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6564720	6564777	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6564720	6564722	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:NA12877_ch_T0000133;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6564778	6582613	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6582614	6582759	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6582614	6582759	.	+	2	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6582760	6603534	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6603535	6603787	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6603535	6603787	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6603788	6609833	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6609834	6609966	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6609834	6609966	.	+	2	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6609967	6610357	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6610358	6610499	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6610358	6610499	.	+	1	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6610500	6611197	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611198	6611261	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611198	6611261	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611262	6611370	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611371	6611468	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611371	6611468	.	+	2	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611469	6614197	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6614198	6614258	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6614198	6614258	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6614259	6620369	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6620370	6620491	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6620370	6620491	.	+	2	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6620492	6625535	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625536	6625610	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625536	6625610	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6625611	6625927	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625928	6626055	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625928	6626055	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6626056	6626904	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6626905	6627070	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6626905	6627070	.	+	1	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6627071	6629726	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6629727	6629828	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6629727	6629828	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6629829	6640422	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:16;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6640423	6640488	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:17;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6640423	6640488	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6640489	6645035	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000133:17;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6645036	6645326	.	+	.	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000133:18;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6645036	6645044	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000133:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6645042	6645044	.	+	0	source_transcript=hg002_chrY_paternal_90.7;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.7,hg002_chrY_paternal_90.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000133;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000133;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:NA12877_ch_T0000133;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	6450327	6645326	100	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_G0000051;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=NA12877_ch_T0000134;Name=TBL1Y
NA12877_chrY	CAT	exon	6450327	6450612	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6450613	6451717	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6451718	6451802	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6451803	6517842	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6517843	6517873	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6517874	6561083	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6561084	6561172	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6561173	6564669	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6564670	6564777	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6564720	6564777	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000134:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6564720	6564722	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:NA12877_ch_T0000134;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6564778	6582613	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6582614	6582759	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6582614	6582759	.	+	2	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000134:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6582760	6603534	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6603535	6603787	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6603535	6603787	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000134:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6603788	6609833	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6609834	6609966	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6609834	6609966	.	+	2	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000134:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6609967	6610357	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6610358	6610499	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6610358	6610499	.	+	1	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000134:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6610500	6611197	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611198	6611261	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611198	6611261	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000134:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611262	6611370	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611371	6611468	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611371	6611468	.	+	2	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000134:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611469	6614197	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6614198	6614258	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6614198	6614258	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000134:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6614259	6620369	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6620370	6620491	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6620370	6620491	.	+	2	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000134:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6620492	6625535	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625536	6625610	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625536	6625610	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000134:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6625611	6625927	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625928	6626055	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625928	6626055	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000134:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6626056	6626924	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000134:14;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6626925	6645326	.	+	.	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000134:15;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6626925	6627030	.	+	1	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000134:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6627028	6627030	.	+	0	source_transcript=hg002_chrY_paternal_90.8;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.8,hg002_chrY_paternal_90.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000134;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000134;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:NA12877_ch_T0000134;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	6450327	6645326	100	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_G0000051;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=NA12877_ch_T0000135;Name=TBL1Y
NA12877_chrY	CAT	exon	6450327	6450612	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6450613	6561083	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000135:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6561084	6561172	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6561173	6564669	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000135:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6564670	6564777	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6564720	6564777	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000135:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6564720	6564722	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:NA12877_ch_T0000135;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6564778	6582613	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000135:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6582614	6582759	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6582614	6582759	.	+	2	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000135:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6582760	6603534	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000135:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6603535	6603787	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6603535	6603787	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000135:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6603788	6609833	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000135:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6609834	6609966	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6609834	6609966	.	+	2	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000135:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6609967	6610357	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000135:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6610358	6610499	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6610358	6610499	.	+	1	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000135:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6610500	6611197	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000135:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611198	6611261	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611198	6611261	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000135:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611262	6611370	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000135:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611371	6611468	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611371	6611468	.	+	2	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000135:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611469	6614197	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000135:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6614198	6614258	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6614198	6614258	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000135:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6614259	6620369	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000135:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6620370	6620491	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6620370	6620491	.	+	2	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000135:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6620492	6625535	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000135:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625536	6625610	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625536	6625610	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000135:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6625611	6625927	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000135:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625928	6626055	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625928	6626055	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000135:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6626056	6626924	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000135:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6626925	6645326	.	+	.	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000135:13;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6626925	6627030	.	+	1	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000135:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6627028	6627030	.	+	0	source_transcript=hg002_chrY_paternal_90.9;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.9,hg002_chrY_paternal_90.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000135;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000135;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:NA12877_ch_T0000135;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	6582245	6631321	100	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_G0000051;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=NA12877_ch_T0000136;Name=TBL1Y
NA12877_chrY	CAT	exon	6582245	6582759	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000136:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6582514	6582759	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000136:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	6582514	6582516	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=start_codon:NA12877_ch_T0000136;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6582760	6603534	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000136:0;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6603535	6603787	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000136:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6603535	6603787	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000136:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6603788	6609833	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000136:1;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6609834	6609966	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000136:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6609834	6609966	.	+	2	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000136:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6609967	6610357	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000136:2;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6610358	6610499	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000136:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6610358	6610499	.	+	1	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000136:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6610500	6611197	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000136:3;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611198	6611261	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000136:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611198	6611261	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000136:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611262	6611370	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000136:4;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6611371	6611468	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000136:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6611371	6611468	.	+	2	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000136:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6611469	6614197	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000136:5;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6614198	6614258	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000136:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6614198	6614258	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000136:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6614259	6620369	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000136:6;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6620370	6620491	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000136:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6620370	6620491	.	+	2	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000136:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6620492	6625535	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000136:7;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625536	6625610	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000136:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625536	6625610	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000136:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6625611	6625927	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000136:8;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6625928	6626055	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000136:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6625928	6626055	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000136:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6626056	6626904	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000136:9;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6626905	6627070	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000136:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6626905	6627070	.	+	1	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000136:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6627071	6629726	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000136:10;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6629727	6629828	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000136:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6629727	6629828	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000136:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6629829	6631109	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=intron:NA12877_ch_T0000136:11;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6631110	6631321	.	+	.	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=exon:NA12877_ch_T0000136:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	6631110	6631130	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=CDS:NA12877_ch_T0000136:12;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	6631128	6631130	.	+	0	source_transcript=hg002_chrY_paternal_90.12;source_transcript_name=hg002_chrY_paternal_90.12;source_gene=hg002_chrY_paternal_90;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_90;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_90.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_90.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=hg002_chrY_paternal_90.12,hg002_chrY_paternal_90.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000136;gene_id=NA12877_ch_G0000051;Parent=NA12877_ch_T0000136;transcript_name=hg002_chrY_paternal_90.12;gene_name=TBL1Y;ID=stop_codon:NA12877_ch_T0000136;Name=TBL1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	6813615	6921191	.	+	.	source_gene_common_name=PRKY;source_gene=hg002_chrY_paternal_93;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;gene_id=NA12877_ch_G0000052;gene_biotype=transcribed_pseudogene;gene_name=PRKY;gene_sources=liftoff;ID=NA12877_ch_G0000052;Name=PRKY
NA12877_chrY	CAT	transcript	6813615	6921191	1000	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_G0000052;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=NA12877_ch_T0000137;Name=PRKY
NA12877_chrY	CAT	exon	6813615	6814121	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:NA12877_ch_T0000137:0;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6814122	6843579	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:NA12877_ch_T0000137:0;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6843580	6843748	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:NA12877_ch_T0000137:1;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6843749	6865548	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:NA12877_ch_T0000137:1;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6865549	6865812	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:NA12877_ch_T0000137:2;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6865813	6880757	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:NA12877_ch_T0000137:2;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6880758	6880877	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:NA12877_ch_T0000137:3;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6880878	6895778	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:NA12877_ch_T0000137:3;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6895779	6895874	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:NA12877_ch_T0000137:4;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6895875	6906999	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:NA12877_ch_T0000137:4;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6907000	6907077	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:NA12877_ch_T0000137:5;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6907078	6911386	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:NA12877_ch_T0000137:5;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6911387	6911533	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:NA12877_ch_T0000137:6;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6911534	6915355	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=intron:NA12877_ch_T0000137:6;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	6915356	6921191	.	+	.	source_transcript=hg002_chrY_paternal_93.1;source_transcript_name=hg002_chrY_paternal_93.1;source_gene=hg002_chrY_paternal_93;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_93;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_93.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_93.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;alternative_source_transcripts=hg002_chrY_paternal_93.1,hg002_chrY_paternal_93.1;transcript_id=NA12877_ch_T0000137;gene_id=NA12877_ch_G0000052;Parent=NA12877_ch_T0000137;transcript_name=hg002_chrY_paternal_93.1;gene_name=PRKY;ID=exon:NA12877_ch_T0000137:7;Name=PRKY;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	6998258	7060236	.	+	.	source_gene_common_name=LOC107987338;source_gene=hg002_chrY_paternal_97;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;gene_id=NA12877_ch_G0000053;gene_biotype=lncRNA;gene_name=LOC107987338;gene_sources=liftoff;ID=NA12877_ch_G0000053;Name=LOC107987338
NA12877_chrY	CAT	transcript	6998258	7060236	1000	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=NA12877_ch_T0000138;gene_id=NA12877_ch_G0000053;Parent=NA12877_ch_G0000053;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=NA12877_ch_T0000138;Name=LOC107987338
NA12877_chrY	CAT	exon	6998258	6998371	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=NA12877_ch_T0000138;gene_id=NA12877_ch_G0000053;Parent=NA12877_ch_T0000138;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=exon:NA12877_ch_T0000138:0;Name=LOC107987338;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	6998372	7040652	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=NA12877_ch_T0000138;gene_id=NA12877_ch_G0000053;Parent=NA12877_ch_T0000138;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=intron:NA12877_ch_T0000138:0;Name=LOC107987338;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7040653	7040811	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=NA12877_ch_T0000138;gene_id=NA12877_ch_G0000053;Parent=NA12877_ch_T0000138;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=exon:NA12877_ch_T0000138:1;Name=LOC107987338;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7040812	7058583	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=NA12877_ch_T0000138;gene_id=NA12877_ch_G0000053;Parent=NA12877_ch_T0000138;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=intron:NA12877_ch_T0000138:1;Name=LOC107987338;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7058584	7058692	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=NA12877_ch_T0000138;gene_id=NA12877_ch_G0000053;Parent=NA12877_ch_T0000138;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=exon:NA12877_ch_T0000138:2;Name=LOC107987338;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7058693	7059724	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=NA12877_ch_T0000138;gene_id=NA12877_ch_G0000053;Parent=NA12877_ch_T0000138;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=intron:NA12877_ch_T0000138:2;Name=LOC107987338;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7059725	7060236	.	+	.	source_transcript=hg002_chrY_paternal_97.1;source_transcript_name=hg002_chrY_paternal_97.1;source_gene=hg002_chrY_paternal_97;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_97;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_97.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_97.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987338;alternative_source_transcripts=hg002_chrY_paternal_97.1,hg002_chrY_paternal_97.1;transcript_id=NA12877_ch_T0000138;gene_id=NA12877_ch_G0000053;Parent=NA12877_ch_T0000138;transcript_name=hg002_chrY_paternal_97.1;gene_name=LOC107987338;ID=exon:NA12877_ch_T0000138:3;Name=LOC107987338;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	7239094	7240984	.	-	.	source_gene_common_name=TTTY16;source_gene=hg002_chrY_paternal_101;alternative_source_transcripts=hg002_chrY_paternal_101.1,hg002_chrY_paternal_101.1;gene_id=NA12877_ch_G0000054;gene_biotype=lncRNA;gene_name=TTTY16;gene_sources=liftoff;ID=NA12877_ch_G0000054;Name=TTTY16
NA12877_chrY	CAT	transcript	7239094	7240984	1000	-	.	source_transcript=hg002_chrY_paternal_101.1;source_transcript_name=hg002_chrY_paternal_101.1;source_gene=hg002_chrY_paternal_101;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_101;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_101.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_101.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;alternative_source_transcripts=hg002_chrY_paternal_101.1,hg002_chrY_paternal_101.1;transcript_id=NA12877_ch_T0000139;gene_id=NA12877_ch_G0000054;Parent=NA12877_ch_G0000054;transcript_name=hg002_chrY_paternal_101.1;gene_name=TTTY16;ID=NA12877_ch_T0000139;Name=TTTY16
NA12877_chrY	CAT	exon	7239094	7239224	.	-	.	source_transcript=hg002_chrY_paternal_101.1;source_transcript_name=hg002_chrY_paternal_101.1;source_gene=hg002_chrY_paternal_101;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_101;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_101.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_101.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;alternative_source_transcripts=hg002_chrY_paternal_101.1,hg002_chrY_paternal_101.1;transcript_id=NA12877_ch_T0000139;gene_id=NA12877_ch_G0000054;Parent=NA12877_ch_T0000139;transcript_name=hg002_chrY_paternal_101.1;gene_name=TTTY16;ID=exon:NA12877_ch_T0000139:0;Name=TTTY16;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7239225	7240923	.	-	.	source_transcript=hg002_chrY_paternal_101.1;source_transcript_name=hg002_chrY_paternal_101.1;source_gene=hg002_chrY_paternal_101;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_101;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_101.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_101.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;alternative_source_transcripts=hg002_chrY_paternal_101.1,hg002_chrY_paternal_101.1;transcript_id=NA12877_ch_T0000139;gene_id=NA12877_ch_G0000054;Parent=NA12877_ch_T0000139;transcript_name=hg002_chrY_paternal_101.1;gene_name=TTTY16;ID=intron:NA12877_ch_T0000139:0;Name=TTTY16;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7240924	7240984	.	-	.	source_transcript=hg002_chrY_paternal_101.1;source_transcript_name=hg002_chrY_paternal_101.1;source_gene=hg002_chrY_paternal_101;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_101;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_101.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_101.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;alternative_source_transcripts=hg002_chrY_paternal_101.1,hg002_chrY_paternal_101.1;transcript_id=NA12877_ch_T0000139;gene_id=NA12877_ch_G0000054;Parent=NA12877_ch_T0000139;transcript_name=hg002_chrY_paternal_101.1;gene_name=TTTY16;ID=exon:NA12877_ch_T0000139:1;Name=TTTY16;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	7319200	7349603	.	-	.	source_gene_common_name=LOC107987339;source_gene=hg002_chrY_paternal_103;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;gene_id=NA12877_ch_G0000055;gene_biotype=lncRNA;gene_name=LOC107987339;gene_sources=liftoff;ID=NA12877_ch_G0000055;Name=LOC107987339
NA12877_chrY	CAT	transcript	7319200	7349603	1000	-	.	source_transcript=hg002_chrY_paternal_103.1;source_transcript_name=hg002_chrY_paternal_103.1;source_gene=hg002_chrY_paternal_103;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_103;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_103.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_103.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987339;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;transcript_id=NA12877_ch_T0000140;gene_id=NA12877_ch_G0000055;Parent=NA12877_ch_G0000055;transcript_name=hg002_chrY_paternal_103.1;gene_name=LOC107987339;ID=NA12877_ch_T0000140;Name=LOC107987339
NA12877_chrY	CAT	exon	7319200	7319247	.	-	.	source_transcript=hg002_chrY_paternal_103.1;source_transcript_name=hg002_chrY_paternal_103.1;source_gene=hg002_chrY_paternal_103;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_103;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_103.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_103.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987339;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;transcript_id=NA12877_ch_T0000140;gene_id=NA12877_ch_G0000055;Parent=NA12877_ch_T0000140;transcript_name=hg002_chrY_paternal_103.1;gene_name=LOC107987339;ID=exon:NA12877_ch_T0000140:0;Name=LOC107987339;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7319248	7345227	.	-	.	source_transcript=hg002_chrY_paternal_103.1;source_transcript_name=hg002_chrY_paternal_103.1;source_gene=hg002_chrY_paternal_103;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_103;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_103.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_103.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987339;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;transcript_id=NA12877_ch_T0000140;gene_id=NA12877_ch_G0000055;Parent=NA12877_ch_T0000140;transcript_name=hg002_chrY_paternal_103.1;gene_name=LOC107987339;ID=intron:NA12877_ch_T0000140:0;Name=LOC107987339;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7345228	7345337	.	-	.	source_transcript=hg002_chrY_paternal_103.1;source_transcript_name=hg002_chrY_paternal_103.1;source_gene=hg002_chrY_paternal_103;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_103;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_103.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_103.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987339;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;transcript_id=NA12877_ch_T0000140;gene_id=NA12877_ch_G0000055;Parent=NA12877_ch_T0000140;transcript_name=hg002_chrY_paternal_103.1;gene_name=LOC107987339;ID=exon:NA12877_ch_T0000140:1;Name=LOC107987339;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7345338	7348886	.	-	.	source_transcript=hg002_chrY_paternal_103.1;source_transcript_name=hg002_chrY_paternal_103.1;source_gene=hg002_chrY_paternal_103;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_103;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_103.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_103.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987339;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;transcript_id=NA12877_ch_T0000140;gene_id=NA12877_ch_G0000055;Parent=NA12877_ch_T0000140;transcript_name=hg002_chrY_paternal_103.1;gene_name=LOC107987339;ID=intron:NA12877_ch_T0000140:1;Name=LOC107987339;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7348887	7349603	.	-	.	source_transcript=hg002_chrY_paternal_103.1;source_transcript_name=hg002_chrY_paternal_103.1;source_gene=hg002_chrY_paternal_103;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_103;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_103.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_103.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987339;alternative_source_transcripts=hg002_chrY_paternal_103.1,hg002_chrY_paternal_103.1;transcript_id=NA12877_ch_T0000140;gene_id=NA12877_ch_G0000055;Parent=NA12877_ch_T0000140;transcript_name=hg002_chrY_paternal_103.1;gene_name=LOC107987339;ID=exon:NA12877_ch_T0000140:2;Name=LOC107987339;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	7343748	7350416	.	+	.	source_gene_common_name=TTTY12;source_gene=hg002_chrY_paternal_104;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;gene_id=NA12877_ch_G0000056;gene_biotype=lncRNA;gene_name=TTTY12;gene_sources=liftoff;ID=NA12877_ch_G0000056;Name=TTTY12
NA12877_chrY	CAT	transcript	7343748	7350416	1000	+	.	source_transcript=hg002_chrY_paternal_104.1;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;transcript_id=NA12877_ch_T0000141;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_G0000056;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=NA12877_ch_T0000141;Name=TTTY12
NA12877_chrY	CAT	exon	7343748	7343795	.	+	.	source_transcript=hg002_chrY_paternal_104.1;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;transcript_id=NA12877_ch_T0000141;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_T0000141;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:NA12877_ch_T0000141:0;Name=TTTY12;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7343796	7344656	.	+	.	source_transcript=hg002_chrY_paternal_104.1;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;transcript_id=NA12877_ch_T0000141;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_T0000141;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=intron:NA12877_ch_T0000141:0;Name=TTTY12;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7344657	7344812	.	+	.	source_transcript=hg002_chrY_paternal_104.1;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;transcript_id=NA12877_ch_T0000141;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_T0000141;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:NA12877_ch_T0000141:1;Name=TTTY12;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7344813	7349593	.	+	.	source_transcript=hg002_chrY_paternal_104.1;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;transcript_id=NA12877_ch_T0000141;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_T0000141;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=intron:NA12877_ch_T0000141:1;Name=TTTY12;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7349594	7350416	.	+	.	source_transcript=hg002_chrY_paternal_104.1;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.1,hg002_chrY_paternal_104.1;transcript_id=NA12877_ch_T0000141;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_T0000141;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:NA12877_ch_T0000141:2;Name=TTTY12;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	7343748	7350416	1000	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=NA12877_ch_T0000142;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_G0000056;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=NA12877_ch_T0000142;Name=TTTY12
NA12877_chrY	CAT	exon	7343748	7343795	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=NA12877_ch_T0000142;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_T0000142;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:NA12877_ch_T0000142:0;Name=TTTY12;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7343796	7344656	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=NA12877_ch_T0000142;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_T0000142;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=intron:NA12877_ch_T0000142:0;Name=TTTY12;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7344657	7344812	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=NA12877_ch_T0000142;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_T0000142;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:NA12877_ch_T0000142:1;Name=TTTY12;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7344813	7345276	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=NA12877_ch_T0000142;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_T0000142;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=intron:NA12877_ch_T0000142:1;Name=TTTY12;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7345277	7345358	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=NA12877_ch_T0000142;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_T0000142;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:NA12877_ch_T0000142:2;Name=TTTY12;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7345359	7349593	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=NA12877_ch_T0000142;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_T0000142;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=intron:NA12877_ch_T0000142:2;Name=TTTY12;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7349594	7350416	.	+	.	source_transcript=hg002_chrY_paternal_104.2;source_transcript_name=hg002_chrY_paternal_104.1;source_gene=hg002_chrY_paternal_104;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_104;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_104.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_104.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=hg002_chrY_paternal_104.2,hg002_chrY_paternal_104.2;transcript_id=NA12877_ch_T0000142;gene_id=NA12877_ch_G0000056;Parent=NA12877_ch_T0000142;transcript_name=hg002_chrY_paternal_104.1;gene_name=TTTY12;ID=exon:NA12877_ch_T0000142:3;Name=TTTY12;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	7370548	7398491	.	-	.	source_gene_common_name=LOC105377229;source_gene=hg002_chrY_paternal_105;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;gene_id=NA12877_ch_G0000057;gene_biotype=lncRNA;gene_name=LOC105377229;gene_sources=liftoff;ID=NA12877_ch_G0000057;Name=LOC105377229
NA12877_chrY	CAT	transcript	7370548	7398491	1000	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=NA12877_ch_T0000143;gene_id=NA12877_ch_G0000057;Parent=NA12877_ch_G0000057;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=NA12877_ch_T0000143;Name=LOC105377229
NA12877_chrY	CAT	exon	7370548	7371823	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=NA12877_ch_T0000143;gene_id=NA12877_ch_G0000057;Parent=NA12877_ch_T0000143;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=exon:NA12877_ch_T0000143:0;Name=LOC105377229;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7371824	7371970	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=NA12877_ch_T0000143;gene_id=NA12877_ch_G0000057;Parent=NA12877_ch_T0000143;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=intron:NA12877_ch_T0000143:0;Name=LOC105377229;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7371971	7372142	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=NA12877_ch_T0000143;gene_id=NA12877_ch_G0000057;Parent=NA12877_ch_T0000143;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=exon:NA12877_ch_T0000143:1;Name=LOC105377229;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7372143	7372710	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=NA12877_ch_T0000143;gene_id=NA12877_ch_G0000057;Parent=NA12877_ch_T0000143;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=intron:NA12877_ch_T0000143:1;Name=LOC105377229;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7372711	7372835	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=NA12877_ch_T0000143;gene_id=NA12877_ch_G0000057;Parent=NA12877_ch_T0000143;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=exon:NA12877_ch_T0000143:2;Name=LOC105377229;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7372836	7398422	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=NA12877_ch_T0000143;gene_id=NA12877_ch_G0000057;Parent=NA12877_ch_T0000143;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=intron:NA12877_ch_T0000143:2;Name=LOC105377229;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7398423	7398491	.	-	.	source_transcript=hg002_chrY_paternal_105.1;source_transcript_name=hg002_chrY_paternal_105.1;source_gene=hg002_chrY_paternal_105;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_105;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_105.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_105.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377229;alternative_source_transcripts=hg002_chrY_paternal_105.1,hg002_chrY_paternal_105.1;transcript_id=NA12877_ch_T0000143;gene_id=NA12877_ch_G0000057;Parent=NA12877_ch_T0000143;transcript_name=hg002_chrY_paternal_105.1;gene_name=LOC105377229;ID=exon:NA12877_ch_T0000143:3;Name=LOC105377229;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	7934771	7947038	.	+	.	source_gene_common_name=LOC105377231;source_gene=hg002_chrY_paternal_124;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;gene_id=NA12877_ch_G0000058;gene_biotype=lncRNA;gene_name=LOC105377231;gene_sources=liftoff;ID=NA12877_ch_G0000058;Name=LOC105377231
NA12877_chrY	CAT	transcript	7934771	7947038	1000	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=NA12877_ch_T0000144;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_G0000058;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=NA12877_ch_T0000144;Name=LOC105377231
NA12877_chrY	CAT	exon	7934771	7934856	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=NA12877_ch_T0000144;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000144;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:NA12877_ch_T0000144:0;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7934857	7942450	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=NA12877_ch_T0000144;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000144;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=intron:NA12877_ch_T0000144:0;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7942451	7942704	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=NA12877_ch_T0000144;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000144;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:NA12877_ch_T0000144:1;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7942705	7943405	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=NA12877_ch_T0000144;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000144;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=intron:NA12877_ch_T0000144:1;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7943406	7943558	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=NA12877_ch_T0000144;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000144;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:NA12877_ch_T0000144:2;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7943559	7946850	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=NA12877_ch_T0000144;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000144;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=intron:NA12877_ch_T0000144:2;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7946851	7947038	.	+	.	source_transcript=hg002_chrY_paternal_124.1;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.1,hg002_chrY_paternal_124.1;transcript_id=NA12877_ch_T0000144;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000144;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:NA12877_ch_T0000144:3;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	7934771	7947038	1000	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=NA12877_ch_T0000145;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_G0000058;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=NA12877_ch_T0000145;Name=LOC105377231
NA12877_chrY	CAT	exon	7934771	7934856	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=NA12877_ch_T0000145;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000145;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:NA12877_ch_T0000145:0;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7934857	7942450	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=NA12877_ch_T0000145;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000145;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=intron:NA12877_ch_T0000145:0;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7942451	7942694	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=NA12877_ch_T0000145;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000145;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:NA12877_ch_T0000145:1;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7942695	7943405	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=NA12877_ch_T0000145;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000145;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=intron:NA12877_ch_T0000145:1;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7943406	7943558	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=NA12877_ch_T0000145;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000145;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:NA12877_ch_T0000145:2;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	7943559	7946850	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=NA12877_ch_T0000145;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000145;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=intron:NA12877_ch_T0000145:2;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	7946851	7947038	.	+	.	source_transcript=hg002_chrY_paternal_124.2;source_transcript_name=hg002_chrY_paternal_124.1;source_gene=hg002_chrY_paternal_124;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_124;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_124.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_124.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377231;alternative_source_transcripts=hg002_chrY_paternal_124.2,hg002_chrY_paternal_124.2;transcript_id=NA12877_ch_T0000145;gene_id=NA12877_ch_G0000058;Parent=NA12877_ch_T0000145;transcript_name=hg002_chrY_paternal_124.1;gene_name=LOC105377231;ID=exon:NA12877_ch_T0000145:3;Name=LOC105377231;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8088785	8090996	.	-	.	source_gene_common_name=LOC105377232;source_gene=hg002_chrY_paternal_128;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;gene_id=NA12877_ch_G0000059;gene_biotype=lncRNA;gene_name=LOC105377232;gene_sources=liftoff;ID=NA12877_ch_G0000059;Name=LOC105377232
NA12877_chrY	CAT	transcript	8088785	8090996	1000	-	.	source_transcript=hg002_chrY_paternal_128.1;source_transcript_name=hg002_chrY_paternal_128.1;source_gene=hg002_chrY_paternal_128;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_128;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_128.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_128.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377232;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;transcript_id=NA12877_ch_T0000146;gene_id=NA12877_ch_G0000059;Parent=NA12877_ch_G0000059;transcript_name=hg002_chrY_paternal_128.1;gene_name=LOC105377232;ID=NA12877_ch_T0000146;Name=LOC105377232
NA12877_chrY	CAT	exon	8088785	8088799	.	-	.	source_transcript=hg002_chrY_paternal_128.1;source_transcript_name=hg002_chrY_paternal_128.1;source_gene=hg002_chrY_paternal_128;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_128;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_128.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_128.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377232;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;transcript_id=NA12877_ch_T0000146;gene_id=NA12877_ch_G0000059;Parent=NA12877_ch_T0000146;transcript_name=hg002_chrY_paternal_128.1;gene_name=LOC105377232;ID=exon:NA12877_ch_T0000146:0;Name=LOC105377232;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8088800	8089485	.	-	.	source_transcript=hg002_chrY_paternal_128.1;source_transcript_name=hg002_chrY_paternal_128.1;source_gene=hg002_chrY_paternal_128;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_128;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_128.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_128.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377232;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;transcript_id=NA12877_ch_T0000146;gene_id=NA12877_ch_G0000059;Parent=NA12877_ch_T0000146;transcript_name=hg002_chrY_paternal_128.1;gene_name=LOC105377232;ID=intron:NA12877_ch_T0000146:0;Name=LOC105377232;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8089486	8089560	.	-	.	source_transcript=hg002_chrY_paternal_128.1;source_transcript_name=hg002_chrY_paternal_128.1;source_gene=hg002_chrY_paternal_128;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_128;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_128.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_128.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377232;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;transcript_id=NA12877_ch_T0000146;gene_id=NA12877_ch_G0000059;Parent=NA12877_ch_T0000146;transcript_name=hg002_chrY_paternal_128.1;gene_name=LOC105377232;ID=exon:NA12877_ch_T0000146:1;Name=LOC105377232;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8089561	8090982	.	-	.	source_transcript=hg002_chrY_paternal_128.1;source_transcript_name=hg002_chrY_paternal_128.1;source_gene=hg002_chrY_paternal_128;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_128;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_128.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_128.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377232;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;transcript_id=NA12877_ch_T0000146;gene_id=NA12877_ch_G0000059;Parent=NA12877_ch_T0000146;transcript_name=hg002_chrY_paternal_128.1;gene_name=LOC105377232;ID=intron:NA12877_ch_T0000146:1;Name=LOC105377232;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8090983	8090996	.	-	.	source_transcript=hg002_chrY_paternal_128.1;source_transcript_name=hg002_chrY_paternal_128.1;source_gene=hg002_chrY_paternal_128;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_128;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_128.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_128.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377232;alternative_source_transcripts=hg002_chrY_paternal_128.1,hg002_chrY_paternal_128.1;transcript_id=NA12877_ch_T0000146;gene_id=NA12877_ch_G0000059;Parent=NA12877_ch_T0000146;transcript_name=hg002_chrY_paternal_128.1;gene_name=LOC105377232;ID=exon:NA12877_ch_T0000146:2;Name=LOC105377232;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8100472	8101959	.	-	.	source_gene_common_name=LOC107987354;source_gene=hg002_chrY_paternal_129;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;gene_id=NA12877_ch_G0000060;gene_biotype=lncRNA;gene_name=LOC107987354;gene_sources=liftoff;ID=NA12877_ch_G0000060;Name=LOC107987354
NA12877_chrY	CAT	transcript	8100472	8101959	1000	-	.	source_transcript=hg002_chrY_paternal_129.1;source_transcript_name=hg002_chrY_paternal_129.1;source_gene=hg002_chrY_paternal_129;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_129;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_129.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_129.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987354;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;transcript_id=NA12877_ch_T0000147;gene_id=NA12877_ch_G0000060;Parent=NA12877_ch_G0000060;transcript_name=hg002_chrY_paternal_129.1;gene_name=LOC107987354;ID=NA12877_ch_T0000147;Name=LOC107987354
NA12877_chrY	CAT	exon	8100472	8100630	.	-	.	source_transcript=hg002_chrY_paternal_129.1;source_transcript_name=hg002_chrY_paternal_129.1;source_gene=hg002_chrY_paternal_129;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_129;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_129.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_129.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987354;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;transcript_id=NA12877_ch_T0000147;gene_id=NA12877_ch_G0000060;Parent=NA12877_ch_T0000147;transcript_name=hg002_chrY_paternal_129.1;gene_name=LOC107987354;ID=exon:NA12877_ch_T0000147:0;Name=LOC107987354;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8100631	8100782	.	-	.	source_transcript=hg002_chrY_paternal_129.1;source_transcript_name=hg002_chrY_paternal_129.1;source_gene=hg002_chrY_paternal_129;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_129;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_129.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_129.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987354;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;transcript_id=NA12877_ch_T0000147;gene_id=NA12877_ch_G0000060;Parent=NA12877_ch_T0000147;transcript_name=hg002_chrY_paternal_129.1;gene_name=LOC107987354;ID=intron:NA12877_ch_T0000147:0;Name=LOC107987354;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8100783	8100857	.	-	.	source_transcript=hg002_chrY_paternal_129.1;source_transcript_name=hg002_chrY_paternal_129.1;source_gene=hg002_chrY_paternal_129;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_129;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_129.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_129.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987354;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;transcript_id=NA12877_ch_T0000147;gene_id=NA12877_ch_G0000060;Parent=NA12877_ch_T0000147;transcript_name=hg002_chrY_paternal_129.1;gene_name=LOC107987354;ID=exon:NA12877_ch_T0000147:1;Name=LOC107987354;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8100858	8101821	.	-	.	source_transcript=hg002_chrY_paternal_129.1;source_transcript_name=hg002_chrY_paternal_129.1;source_gene=hg002_chrY_paternal_129;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_129;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_129.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_129.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987354;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;transcript_id=NA12877_ch_T0000147;gene_id=NA12877_ch_G0000060;Parent=NA12877_ch_T0000147;transcript_name=hg002_chrY_paternal_129.1;gene_name=LOC107987354;ID=intron:NA12877_ch_T0000147:1;Name=LOC107987354;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8101822	8101959	.	-	.	source_transcript=hg002_chrY_paternal_129.1;source_transcript_name=hg002_chrY_paternal_129.1;source_gene=hg002_chrY_paternal_129;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_129;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_129.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_129.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987354;alternative_source_transcripts=hg002_chrY_paternal_129.1,hg002_chrY_paternal_129.1;transcript_id=NA12877_ch_T0000147;gene_id=NA12877_ch_G0000060;Parent=NA12877_ch_T0000147;transcript_name=hg002_chrY_paternal_129.1;gene_name=LOC107987354;ID=exon:NA12877_ch_T0000147:2;Name=LOC107987354;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8178091	8184926	.	+	.	source_gene_common_name=LINC00279;source_gene=hg002_chrY_paternal_130;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;gene_id=NA12877_ch_G0000061;gene_biotype=lncRNA;gene_name=LINC00279;gene_sources=liftoff;ID=NA12877_ch_G0000061;Name=LINC00279
NA12877_chrY	CAT	transcript	8178091	8184926	1000	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=NA12877_ch_T0000148;gene_id=NA12877_ch_G0000061;Parent=NA12877_ch_G0000061;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=NA12877_ch_T0000148;Name=LINC00279
NA12877_chrY	CAT	exon	8178091	8178203	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=NA12877_ch_T0000148;gene_id=NA12877_ch_G0000061;Parent=NA12877_ch_T0000148;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=exon:NA12877_ch_T0000148:0;Name=LINC00279;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8178204	8183928	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=NA12877_ch_T0000148;gene_id=NA12877_ch_G0000061;Parent=NA12877_ch_T0000148;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=intron:NA12877_ch_T0000148:0;Name=LINC00279;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8183929	8184124	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=NA12877_ch_T0000148;gene_id=NA12877_ch_G0000061;Parent=NA12877_ch_T0000148;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=exon:NA12877_ch_T0000148:1;Name=LINC00279;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8184125	8184475	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=NA12877_ch_T0000148;gene_id=NA12877_ch_G0000061;Parent=NA12877_ch_T0000148;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=intron:NA12877_ch_T0000148:1;Name=LINC00279;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8184476	8184718	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=NA12877_ch_T0000148;gene_id=NA12877_ch_G0000061;Parent=NA12877_ch_T0000148;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=exon:NA12877_ch_T0000148:2;Name=LINC00279;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8184719	8184850	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=NA12877_ch_T0000148;gene_id=NA12877_ch_G0000061;Parent=NA12877_ch_T0000148;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=intron:NA12877_ch_T0000148:2;Name=LINC00279;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8184851	8184926	.	+	.	source_transcript=hg002_chrY_paternal_130.1;source_transcript_name=hg002_chrY_paternal_130.1;source_gene=hg002_chrY_paternal_130;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_130;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_130.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_130.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;alternative_source_transcripts=hg002_chrY_paternal_130.1,hg002_chrY_paternal_130.1;transcript_id=NA12877_ch_T0000148;gene_id=NA12877_ch_G0000061;Parent=NA12877_ch_T0000148;transcript_name=hg002_chrY_paternal_130.1;gene_name=LINC00279;ID=exon:NA12877_ch_T0000148:3;Name=LINC00279;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8199839	8200680	.	+	.	source_gene_common_name=LOC107987340;source_gene=hg002_chrY_paternal_131;alternative_source_transcripts=hg002_chrY_paternal_131.1,hg002_chrY_paternal_131.1;gene_id=NA12877_ch_G0000062;gene_biotype=lncRNA;gene_name=LOC107987340;gene_sources=liftoff;ID=NA12877_ch_G0000062;Name=LOC107987340
NA12877_chrY	CAT	transcript	8199839	8200680	1000	+	.	source_transcript=hg002_chrY_paternal_131.1;source_transcript_name=hg002_chrY_paternal_131.1;source_gene=hg002_chrY_paternal_131;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_131;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_131.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_131.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987340;alternative_source_transcripts=hg002_chrY_paternal_131.1,hg002_chrY_paternal_131.1;transcript_id=NA12877_ch_T0000149;gene_id=NA12877_ch_G0000062;Parent=NA12877_ch_G0000062;transcript_name=hg002_chrY_paternal_131.1;gene_name=LOC107987340;ID=NA12877_ch_T0000149;Name=LOC107987340
NA12877_chrY	CAT	exon	8199839	8199960	.	+	.	source_transcript=hg002_chrY_paternal_131.1;source_transcript_name=hg002_chrY_paternal_131.1;source_gene=hg002_chrY_paternal_131;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_131;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_131.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_131.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987340;alternative_source_transcripts=hg002_chrY_paternal_131.1,hg002_chrY_paternal_131.1;transcript_id=NA12877_ch_T0000149;gene_id=NA12877_ch_G0000062;Parent=NA12877_ch_T0000149;transcript_name=hg002_chrY_paternal_131.1;gene_name=LOC107987340;ID=exon:NA12877_ch_T0000149:0;Name=LOC107987340;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8199961	8200295	.	+	.	source_transcript=hg002_chrY_paternal_131.1;source_transcript_name=hg002_chrY_paternal_131.1;source_gene=hg002_chrY_paternal_131;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_131;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_131.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_131.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987340;alternative_source_transcripts=hg002_chrY_paternal_131.1,hg002_chrY_paternal_131.1;transcript_id=NA12877_ch_T0000149;gene_id=NA12877_ch_G0000062;Parent=NA12877_ch_T0000149;transcript_name=hg002_chrY_paternal_131.1;gene_name=LOC107987340;ID=intron:NA12877_ch_T0000149:0;Name=LOC107987340;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8200296	8200680	.	+	.	source_transcript=hg002_chrY_paternal_131.1;source_transcript_name=hg002_chrY_paternal_131.1;source_gene=hg002_chrY_paternal_131;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_131;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_131.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_131.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987340;alternative_source_transcripts=hg002_chrY_paternal_131.1,hg002_chrY_paternal_131.1;transcript_id=NA12877_ch_T0000149;gene_id=NA12877_ch_G0000062;Parent=NA12877_ch_T0000149;transcript_name=hg002_chrY_paternal_131.1;gene_name=LOC107987340;ID=exon:NA12877_ch_T0000149:1;Name=LOC107987340;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8223167	8223675	.	-	.	source_gene_common_name=TTTY18;source_gene=hg002_chrY_paternal_132;alternative_source_transcripts=hg002_chrY_paternal_132.1,hg002_chrY_paternal_132.1;gene_id=NA12877_ch_G0000063;gene_biotype=lncRNA;gene_name=TTTY18;gene_sources=liftoff;ID=NA12877_ch_G0000063;Name=TTTY18
NA12877_chrY	CAT	transcript	8223167	8223675	1000	-	.	source_transcript=hg002_chrY_paternal_132.1;source_transcript_name=hg002_chrY_paternal_132.1;source_gene=hg002_chrY_paternal_132;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_132;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_132.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_132.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=hg002_chrY_paternal_132.1,hg002_chrY_paternal_132.1;transcript_id=NA12877_ch_T0000150;gene_id=NA12877_ch_G0000063;Parent=NA12877_ch_G0000063;transcript_name=hg002_chrY_paternal_132.1;gene_name=TTTY18;ID=NA12877_ch_T0000150;Name=TTTY18
NA12877_chrY	CAT	exon	8223167	8223229	.	-	.	source_transcript=hg002_chrY_paternal_132.1;source_transcript_name=hg002_chrY_paternal_132.1;source_gene=hg002_chrY_paternal_132;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_132;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_132.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_132.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=hg002_chrY_paternal_132.1,hg002_chrY_paternal_132.1;transcript_id=NA12877_ch_T0000150;gene_id=NA12877_ch_G0000063;Parent=NA12877_ch_T0000150;transcript_name=hg002_chrY_paternal_132.1;gene_name=TTTY18;ID=exon:NA12877_ch_T0000150:0;Name=TTTY18;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8223230	8223517	.	-	.	source_transcript=hg002_chrY_paternal_132.1;source_transcript_name=hg002_chrY_paternal_132.1;source_gene=hg002_chrY_paternal_132;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_132;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_132.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_132.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=hg002_chrY_paternal_132.1,hg002_chrY_paternal_132.1;transcript_id=NA12877_ch_T0000150;gene_id=NA12877_ch_G0000063;Parent=NA12877_ch_T0000150;transcript_name=hg002_chrY_paternal_132.1;gene_name=TTTY18;ID=intron:NA12877_ch_T0000150:0;Name=TTTY18;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8223518	8223675	.	-	.	source_transcript=hg002_chrY_paternal_132.1;source_transcript_name=hg002_chrY_paternal_132.1;source_gene=hg002_chrY_paternal_132;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_132;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_132.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_132.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=hg002_chrY_paternal_132.1,hg002_chrY_paternal_132.1;transcript_id=NA12877_ch_T0000150;gene_id=NA12877_ch_G0000063;Parent=NA12877_ch_T0000150;transcript_name=hg002_chrY_paternal_132.1;gene_name=TTTY18;ID=exon:NA12877_ch_T0000150:1;Name=TTTY18;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8233680	8235101	.	-	.	source_gene_common_name=LOC105377234;source_gene=hg002_chrY_paternal_133;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;gene_id=NA12877_ch_G0000064;gene_biotype=lncRNA;gene_name=LOC105377234;gene_sources=liftoff;ID=NA12877_ch_G0000064;Name=LOC105377234
NA12877_chrY	CAT	transcript	8233680	8235101	1000	-	.	source_transcript=hg002_chrY_paternal_133.1;source_transcript_name=hg002_chrY_paternal_133.1;source_gene=hg002_chrY_paternal_133;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_133;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_133.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_133.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377234;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;transcript_id=NA12877_ch_T0000151;gene_id=NA12877_ch_G0000064;Parent=NA12877_ch_G0000064;transcript_name=hg002_chrY_paternal_133.1;gene_name=LOC105377234;ID=NA12877_ch_T0000151;Name=LOC105377234
NA12877_chrY	CAT	exon	8233680	8233766	.	-	.	source_transcript=hg002_chrY_paternal_133.1;source_transcript_name=hg002_chrY_paternal_133.1;source_gene=hg002_chrY_paternal_133;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_133;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_133.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_133.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377234;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;transcript_id=NA12877_ch_T0000151;gene_id=NA12877_ch_G0000064;Parent=NA12877_ch_T0000151;transcript_name=hg002_chrY_paternal_133.1;gene_name=LOC105377234;ID=exon:NA12877_ch_T0000151:0;Name=LOC105377234;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8233767	8234250	.	-	.	source_transcript=hg002_chrY_paternal_133.1;source_transcript_name=hg002_chrY_paternal_133.1;source_gene=hg002_chrY_paternal_133;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_133;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_133.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_133.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377234;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;transcript_id=NA12877_ch_T0000151;gene_id=NA12877_ch_G0000064;Parent=NA12877_ch_T0000151;transcript_name=hg002_chrY_paternal_133.1;gene_name=LOC105377234;ID=intron:NA12877_ch_T0000151:0;Name=LOC105377234;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8234251	8234328	.	-	.	source_transcript=hg002_chrY_paternal_133.1;source_transcript_name=hg002_chrY_paternal_133.1;source_gene=hg002_chrY_paternal_133;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_133;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_133.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_133.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377234;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;transcript_id=NA12877_ch_T0000151;gene_id=NA12877_ch_G0000064;Parent=NA12877_ch_T0000151;transcript_name=hg002_chrY_paternal_133.1;gene_name=LOC105377234;ID=exon:NA12877_ch_T0000151:1;Name=LOC105377234;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8234329	8234909	.	-	.	source_transcript=hg002_chrY_paternal_133.1;source_transcript_name=hg002_chrY_paternal_133.1;source_gene=hg002_chrY_paternal_133;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_133;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_133.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_133.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377234;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;transcript_id=NA12877_ch_T0000151;gene_id=NA12877_ch_G0000064;Parent=NA12877_ch_T0000151;transcript_name=hg002_chrY_paternal_133.1;gene_name=LOC105377234;ID=intron:NA12877_ch_T0000151:1;Name=LOC105377234;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8234910	8235101	.	-	.	source_transcript=hg002_chrY_paternal_133.1;source_transcript_name=hg002_chrY_paternal_133.1;source_gene=hg002_chrY_paternal_133;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_133;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_133.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_133.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377234;alternative_source_transcripts=hg002_chrY_paternal_133.1,hg002_chrY_paternal_133.1;transcript_id=NA12877_ch_T0000151;gene_id=NA12877_ch_G0000064;Parent=NA12877_ch_T0000151;transcript_name=hg002_chrY_paternal_133.1;gene_name=LOC105377234;ID=exon:NA12877_ch_T0000151:2;Name=LOC105377234;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8244276	8245087	.	+	.	source_gene_common_name=TTTY19;source_gene=hg002_chrY_paternal_134;alternative_source_transcripts=hg002_chrY_paternal_134.1,hg002_chrY_paternal_134.1;gene_id=NA12877_ch_G0000065;gene_biotype=lncRNA;gene_name=TTTY19;gene_sources=liftoff;ID=NA12877_ch_G0000065;Name=TTTY19
NA12877_chrY	CAT	transcript	8244276	8245087	1000	+	.	source_transcript=hg002_chrY_paternal_134.1;source_transcript_name=hg002_chrY_paternal_134.1;source_gene=hg002_chrY_paternal_134;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_134;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_134.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_134.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY19;alternative_source_transcripts=hg002_chrY_paternal_134.1,hg002_chrY_paternal_134.1;transcript_id=NA12877_ch_T0000152;gene_id=NA12877_ch_G0000065;Parent=NA12877_ch_G0000065;transcript_name=hg002_chrY_paternal_134.1;gene_name=TTTY19;ID=NA12877_ch_T0000152;Name=TTTY19
NA12877_chrY	CAT	exon	8244276	8244363	.	+	.	source_transcript=hg002_chrY_paternal_134.1;source_transcript_name=hg002_chrY_paternal_134.1;source_gene=hg002_chrY_paternal_134;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_134;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_134.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_134.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY19;alternative_source_transcripts=hg002_chrY_paternal_134.1,hg002_chrY_paternal_134.1;transcript_id=NA12877_ch_T0000152;gene_id=NA12877_ch_G0000065;Parent=NA12877_ch_T0000152;transcript_name=hg002_chrY_paternal_134.1;gene_name=TTTY19;ID=exon:NA12877_ch_T0000152:0;Name=TTTY19;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8244364	8244906	.	+	.	source_transcript=hg002_chrY_paternal_134.1;source_transcript_name=hg002_chrY_paternal_134.1;source_gene=hg002_chrY_paternal_134;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_134;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_134.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_134.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY19;alternative_source_transcripts=hg002_chrY_paternal_134.1,hg002_chrY_paternal_134.1;transcript_id=NA12877_ch_T0000152;gene_id=NA12877_ch_G0000065;Parent=NA12877_ch_T0000152;transcript_name=hg002_chrY_paternal_134.1;gene_name=TTTY19;ID=intron:NA12877_ch_T0000152:0;Name=TTTY19;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8244907	8245087	.	+	.	source_transcript=hg002_chrY_paternal_134.1;source_transcript_name=hg002_chrY_paternal_134.1;source_gene=hg002_chrY_paternal_134;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_134;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_134.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_134.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY19;alternative_source_transcripts=hg002_chrY_paternal_134.1,hg002_chrY_paternal_134.1;transcript_id=NA12877_ch_T0000152;gene_id=NA12877_ch_G0000065;Parent=NA12877_ch_T0000152;transcript_name=hg002_chrY_paternal_134.1;gene_name=TTTY19;ID=exon:NA12877_ch_T0000152:1;Name=TTTY19;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8261602	8264087	.	-	.	source_gene_common_name=LOC105377235;source_gene=hg002_chrY_paternal_135;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;gene_id=NA12877_ch_G0000066;gene_biotype=lncRNA;gene_name=LOC105377235;gene_sources=liftoff;ID=NA12877_ch_G0000066;Name=LOC105377235
NA12877_chrY	CAT	transcript	8261602	8264087	1000	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=NA12877_ch_T0000153;gene_id=NA12877_ch_G0000066;Parent=NA12877_ch_G0000066;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=NA12877_ch_T0000153;Name=LOC105377235
NA12877_chrY	CAT	exon	8261602	8261885	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=NA12877_ch_T0000153;gene_id=NA12877_ch_G0000066;Parent=NA12877_ch_T0000153;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=exon:NA12877_ch_T0000153:0;Name=LOC105377235;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8261886	8261982	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=NA12877_ch_T0000153;gene_id=NA12877_ch_G0000066;Parent=NA12877_ch_T0000153;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=intron:NA12877_ch_T0000153:0;Name=LOC105377235;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8261983	8262078	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=NA12877_ch_T0000153;gene_id=NA12877_ch_G0000066;Parent=NA12877_ch_T0000153;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=exon:NA12877_ch_T0000153:1;Name=LOC105377235;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8262079	8262168	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=NA12877_ch_T0000153;gene_id=NA12877_ch_G0000066;Parent=NA12877_ch_T0000153;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=intron:NA12877_ch_T0000153:1;Name=LOC105377235;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8262169	8262431	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=NA12877_ch_T0000153;gene_id=NA12877_ch_G0000066;Parent=NA12877_ch_T0000153;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=exon:NA12877_ch_T0000153:2;Name=LOC105377235;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8262432	8263899	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=NA12877_ch_T0000153;gene_id=NA12877_ch_G0000066;Parent=NA12877_ch_T0000153;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=intron:NA12877_ch_T0000153:2;Name=LOC105377235;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8263900	8264087	.	-	.	source_transcript=hg002_chrY_paternal_135.1;source_transcript_name=hg002_chrY_paternal_135.1;source_gene=hg002_chrY_paternal_135;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_135;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_135.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_135.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377235;alternative_source_transcripts=hg002_chrY_paternal_135.1,hg002_chrY_paternal_135.1;transcript_id=NA12877_ch_T0000153;gene_id=NA12877_ch_G0000066;Parent=NA12877_ch_T0000153;transcript_name=hg002_chrY_paternal_135.1;gene_name=LOC105377235;ID=exon:NA12877_ch_T0000153:3;Name=LOC105377235;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8323122	8357190	.	-	.	source_gene_common_name=TTTY11;source_gene=hg002_chrY_paternal_136;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;gene_id=NA12877_ch_G0000067;gene_biotype=lncRNA;gene_name=TTTY11;gene_sources=liftoff;ID=NA12877_ch_G0000067;Name=TTTY11
NA12877_chrY	CAT	transcript	8323122	8357190	1000	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=NA12877_ch_T0000154;gene_id=NA12877_ch_G0000067;Parent=NA12877_ch_G0000067;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=NA12877_ch_T0000154;Name=TTTY11
NA12877_chrY	CAT	exon	8323122	8323215	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=NA12877_ch_T0000154;gene_id=NA12877_ch_G0000067;Parent=NA12877_ch_T0000154;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=exon:NA12877_ch_T0000154:0;Name=TTTY11;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8323216	8323696	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=NA12877_ch_T0000154;gene_id=NA12877_ch_G0000067;Parent=NA12877_ch_T0000154;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=intron:NA12877_ch_T0000154:0;Name=TTTY11;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8323697	8324012	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=NA12877_ch_T0000154;gene_id=NA12877_ch_G0000067;Parent=NA12877_ch_T0000154;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=exon:NA12877_ch_T0000154:1;Name=TTTY11;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8324013	8328808	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=NA12877_ch_T0000154;gene_id=NA12877_ch_G0000067;Parent=NA12877_ch_T0000154;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=intron:NA12877_ch_T0000154:1;Name=TTTY11;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8328809	8329111	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=NA12877_ch_T0000154;gene_id=NA12877_ch_G0000067;Parent=NA12877_ch_T0000154;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=exon:NA12877_ch_T0000154:2;Name=TTTY11;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8329112	8334669	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=NA12877_ch_T0000154;gene_id=NA12877_ch_G0000067;Parent=NA12877_ch_T0000154;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=intron:NA12877_ch_T0000154:2;Name=TTTY11;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8334670	8334753	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=NA12877_ch_T0000154;gene_id=NA12877_ch_G0000067;Parent=NA12877_ch_T0000154;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=exon:NA12877_ch_T0000154:3;Name=TTTY11;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8334754	8357153	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=NA12877_ch_T0000154;gene_id=NA12877_ch_G0000067;Parent=NA12877_ch_T0000154;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=intron:NA12877_ch_T0000154:3;Name=TTTY11;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8357154	8357190	.	-	.	source_transcript=hg002_chrY_paternal_136.1;source_transcript_name=hg002_chrY_paternal_136.1;source_gene=hg002_chrY_paternal_136;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_136;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_136.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;alternative_source_transcripts=hg002_chrY_paternal_136.1,hg002_chrY_paternal_136.1;transcript_id=NA12877_ch_T0000154;gene_id=NA12877_ch_G0000067;Parent=NA12877_ch_T0000154;transcript_name=hg002_chrY_paternal_136.1;gene_name=TTTY11;ID=exon:NA12877_ch_T0000154:4;Name=TTTY11;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8754748	8759612	.	+	.	source_gene_common_name=LOC105379264;source_gene=hg002_chrY_paternal_145;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;gene_id=NA12877_ch_G0000068;gene_biotype=lncRNA;gene_name=LOC105379264;gene_sources=liftoff;ID=NA12877_ch_G0000068;Name=LOC105379264
NA12877_chrY	CAT	transcript	8754748	8759612	1000	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=NA12877_ch_T0000155;gene_id=NA12877_ch_G0000068;Parent=NA12877_ch_G0000068;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=NA12877_ch_T0000155;Name=LOC105379264
NA12877_chrY	CAT	exon	8754748	8754822	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=NA12877_ch_T0000155;gene_id=NA12877_ch_G0000068;Parent=NA12877_ch_T0000155;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=exon:NA12877_ch_T0000155:0;Name=LOC105379264;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8754823	8754976	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=NA12877_ch_T0000155;gene_id=NA12877_ch_G0000068;Parent=NA12877_ch_T0000155;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=intron:NA12877_ch_T0000155:0;Name=LOC105379264;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8754977	8755081	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=NA12877_ch_T0000155;gene_id=NA12877_ch_G0000068;Parent=NA12877_ch_T0000155;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=exon:NA12877_ch_T0000155:1;Name=LOC105379264;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8755082	8757143	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=NA12877_ch_T0000155;gene_id=NA12877_ch_G0000068;Parent=NA12877_ch_T0000155;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=intron:NA12877_ch_T0000155:1;Name=LOC105379264;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8757144	8757219	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=NA12877_ch_T0000155;gene_id=NA12877_ch_G0000068;Parent=NA12877_ch_T0000155;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=exon:NA12877_ch_T0000155:2;Name=LOC105379264;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8757220	8759528	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=NA12877_ch_T0000155;gene_id=NA12877_ch_G0000068;Parent=NA12877_ch_T0000155;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=intron:NA12877_ch_T0000155:2;Name=LOC105379264;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8759529	8759612	.	+	.	source_transcript=hg002_chrY_paternal_145.1;source_transcript_name=hg002_chrY_paternal_145.1;source_gene=hg002_chrY_paternal_145;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_145;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_145.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_145.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379264;alternative_source_transcripts=hg002_chrY_paternal_145.1,hg002_chrY_paternal_145.1;transcript_id=NA12877_ch_T0000155;gene_id=NA12877_ch_G0000068;Parent=NA12877_ch_T0000155;transcript_name=hg002_chrY_paternal_145.1;gene_name=LOC105379264;ID=exon:NA12877_ch_T0000155:3;Name=LOC105379264;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8764301	8772847	.	+	.	source_gene_common_name=LOC105379265;source_gene=hg002_chrY_paternal_146;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;gene_id=NA12877_ch_G0000069;gene_biotype=lncRNA;gene_name=LOC105379265;gene_sources=liftoff;ID=NA12877_ch_G0000069;Name=LOC105379265
NA12877_chrY	CAT	transcript	8764301	8772847	1000	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=NA12877_ch_T0000156;gene_id=NA12877_ch_G0000069;Parent=NA12877_ch_G0000069;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=NA12877_ch_T0000156;Name=LOC105379265
NA12877_chrY	CAT	exon	8764301	8764856	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=NA12877_ch_T0000156;gene_id=NA12877_ch_G0000069;Parent=NA12877_ch_T0000156;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=exon:NA12877_ch_T0000156:0;Name=LOC105379265;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8764857	8765964	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=NA12877_ch_T0000156;gene_id=NA12877_ch_G0000069;Parent=NA12877_ch_T0000156;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=intron:NA12877_ch_T0000156:0;Name=LOC105379265;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8765965	8766106	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=NA12877_ch_T0000156;gene_id=NA12877_ch_G0000069;Parent=NA12877_ch_T0000156;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=exon:NA12877_ch_T0000156:1;Name=LOC105379265;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8766107	8768250	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=NA12877_ch_T0000156;gene_id=NA12877_ch_G0000069;Parent=NA12877_ch_T0000156;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=intron:NA12877_ch_T0000156:1;Name=LOC105379265;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8768251	8768337	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=NA12877_ch_T0000156;gene_id=NA12877_ch_G0000069;Parent=NA12877_ch_T0000156;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=exon:NA12877_ch_T0000156:2;Name=LOC105379265;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8768338	8772718	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=NA12877_ch_T0000156;gene_id=NA12877_ch_G0000069;Parent=NA12877_ch_T0000156;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=intron:NA12877_ch_T0000156:2;Name=LOC105379265;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8772719	8772847	.	+	.	source_transcript=hg002_chrY_paternal_146.1;source_transcript_name=hg002_chrY_paternal_146.1;source_gene=hg002_chrY_paternal_146;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_146;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_146.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_146.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379265;alternative_source_transcripts=hg002_chrY_paternal_146.1,hg002_chrY_paternal_146.1;transcript_id=NA12877_ch_T0000156;gene_id=NA12877_ch_G0000069;Parent=NA12877_ch_T0000156;transcript_name=hg002_chrY_paternal_146.1;gene_name=LOC105379265;ID=exon:NA12877_ch_T0000156:3;Name=LOC105379265;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8778881	8781132	.	+	.	source_gene_common_name=LOC105379266;source_gene=hg002_chrY_paternal_147;alternative_source_transcripts=hg002_chrY_paternal_147.1;gene_id=NA12877_ch_G0000070;gene_biotype=lncRNA;gene_name=LOC105379266;gene_sources=liftoff,transMap;ID=NA12877_ch_G0000070;Name=LOC105379266
NA12877_chrY	CAT	transcript	8778881	8781132	1000	+	.	source_transcript=hg002_chrY_paternal_147.1;source_transcript_name=hg002_chrY_paternal_147.1;source_gene=hg002_chrY_paternal_147;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_147;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_147.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_147.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_147.1;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000157;gene_id=NA12877_ch_G0000070;Parent=NA12877_ch_G0000070;transcript_name=hg002_chrY_paternal_147.1;gene_name=LOC105379266;ID=NA12877_ch_T0000157;Name=LOC105379266
NA12877_chrY	CAT	exon	8778881	8779165	.	+	.	source_transcript=hg002_chrY_paternal_147.1;source_transcript_name=hg002_chrY_paternal_147.1;source_gene=hg002_chrY_paternal_147;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_147;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_147.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_147.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_147.1;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000157;gene_id=NA12877_ch_G0000070;Parent=NA12877_ch_T0000157;transcript_name=hg002_chrY_paternal_147.1;gene_name=LOC105379266;ID=exon:NA12877_ch_T0000157:0;Name=LOC105379266;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8779166	8779850	.	+	.	source_transcript=hg002_chrY_paternal_147.1;source_transcript_name=hg002_chrY_paternal_147.1;source_gene=hg002_chrY_paternal_147;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_147;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_147.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_147.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_147.1;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000157;gene_id=NA12877_ch_G0000070;Parent=NA12877_ch_T0000157;transcript_name=hg002_chrY_paternal_147.1;gene_name=LOC105379266;ID=intron:NA12877_ch_T0000157:0;Name=LOC105379266;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8779851	8781132	.	+	.	source_transcript=hg002_chrY_paternal_147.1;source_transcript_name=hg002_chrY_paternal_147.1;source_gene=hg002_chrY_paternal_147;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_147;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_147.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_147.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_147.1;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000157;gene_id=NA12877_ch_G0000070;Parent=NA12877_ch_T0000157;transcript_name=hg002_chrY_paternal_147.1;gene_name=LOC105379266;ID=exon:NA12877_ch_T0000157:1;Name=LOC105379266;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8782288	8794517	.	+	.	source_gene_common_name=LOC105379267;source_gene=hg002_chrY_paternal_148;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;gene_id=NA12877_ch_G0000071;gene_biotype=lncRNA;gene_name=LOC105379267;gene_sources=liftoff;ID=NA12877_ch_G0000071;Name=LOC105379267
NA12877_chrY	CAT	transcript	8782288	8794517	1000	+	.	source_transcript=hg002_chrY_paternal_148.1;source_transcript_name=hg002_chrY_paternal_148.1;source_gene=hg002_chrY_paternal_148;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_148;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_148.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_148.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379267;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;transcript_id=NA12877_ch_T0000158;gene_id=NA12877_ch_G0000071;Parent=NA12877_ch_G0000071;transcript_name=hg002_chrY_paternal_148.1;gene_name=LOC105379267;ID=NA12877_ch_T0000158;Name=LOC105379267
NA12877_chrY	CAT	exon	8782288	8782459	.	+	.	source_transcript=hg002_chrY_paternal_148.1;source_transcript_name=hg002_chrY_paternal_148.1;source_gene=hg002_chrY_paternal_148;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_148;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_148.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379267;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;transcript_id=NA12877_ch_T0000158;gene_id=NA12877_ch_G0000071;Parent=NA12877_ch_T0000158;transcript_name=hg002_chrY_paternal_148.1;gene_name=LOC105379267;ID=exon:NA12877_ch_T0000158:0;Name=LOC105379267;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8782460	8783704	.	+	.	source_transcript=hg002_chrY_paternal_148.1;source_transcript_name=hg002_chrY_paternal_148.1;source_gene=hg002_chrY_paternal_148;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_148;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_148.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379267;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;transcript_id=NA12877_ch_T0000158;gene_id=NA12877_ch_G0000071;Parent=NA12877_ch_T0000158;transcript_name=hg002_chrY_paternal_148.1;gene_name=LOC105379267;ID=intron:NA12877_ch_T0000158:0;Name=LOC105379267;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8783705	8783779	.	+	.	source_transcript=hg002_chrY_paternal_148.1;source_transcript_name=hg002_chrY_paternal_148.1;source_gene=hg002_chrY_paternal_148;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_148;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_148.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379267;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;transcript_id=NA12877_ch_T0000158;gene_id=NA12877_ch_G0000071;Parent=NA12877_ch_T0000158;transcript_name=hg002_chrY_paternal_148.1;gene_name=LOC105379267;ID=exon:NA12877_ch_T0000158:1;Name=LOC105379267;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8783780	8794446	.	+	.	source_transcript=hg002_chrY_paternal_148.1;source_transcript_name=hg002_chrY_paternal_148.1;source_gene=hg002_chrY_paternal_148;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_148;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_148.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379267;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;transcript_id=NA12877_ch_T0000158;gene_id=NA12877_ch_G0000071;Parent=NA12877_ch_T0000158;transcript_name=hg002_chrY_paternal_148.1;gene_name=LOC105379267;ID=intron:NA12877_ch_T0000158:1;Name=LOC105379267;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8794447	8794517	.	+	.	source_transcript=hg002_chrY_paternal_148.1;source_transcript_name=hg002_chrY_paternal_148.1;source_gene=hg002_chrY_paternal_148;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_148;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_148.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379267;alternative_source_transcripts=hg002_chrY_paternal_148.1,hg002_chrY_paternal_148.1;transcript_id=NA12877_ch_T0000158;gene_id=NA12877_ch_G0000071;Parent=NA12877_ch_T0000158;transcript_name=hg002_chrY_paternal_148.1;gene_name=LOC105379267;ID=exon:NA12877_ch_T0000158:2;Name=LOC105379267;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8806965	8812778	.	-	.	source_gene_common_name=RBMY1A3P;source_gene=hg002_chrY_paternal_149;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;gene_id=NA12877_ch_G0000072;gene_biotype=transcribed_pseudogene;gene_name=RBMY1A3P;gene_sources=liftoff;ID=NA12877_ch_G0000072;Name=RBMY1A3P
NA12877_chrY	CAT	transcript	8806965	8812778	1000	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=NA12877_ch_T0000159;gene_id=NA12877_ch_G0000072;Parent=NA12877_ch_G0000072;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=NA12877_ch_T0000159;Name=RBMY1A3P
NA12877_chrY	CAT	exon	8806965	8806995	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=NA12877_ch_T0000159;gene_id=NA12877_ch_G0000072;Parent=NA12877_ch_T0000159;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=exon:NA12877_ch_T0000159:0;Name=RBMY1A3P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8806996	8808895	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=NA12877_ch_T0000159;gene_id=NA12877_ch_G0000072;Parent=NA12877_ch_T0000159;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=intron:NA12877_ch_T0000159:0;Name=RBMY1A3P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8808896	8809073	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=NA12877_ch_T0000159;gene_id=NA12877_ch_G0000072;Parent=NA12877_ch_T0000159;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=exon:NA12877_ch_T0000159:1;Name=RBMY1A3P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8809074	8812088	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=NA12877_ch_T0000159;gene_id=NA12877_ch_G0000072;Parent=NA12877_ch_T0000159;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=intron:NA12877_ch_T0000159:1;Name=RBMY1A3P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8812089	8812192	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=NA12877_ch_T0000159;gene_id=NA12877_ch_G0000072;Parent=NA12877_ch_T0000159;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=exon:NA12877_ch_T0000159:2;Name=RBMY1A3P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8812193	8812664	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=NA12877_ch_T0000159;gene_id=NA12877_ch_G0000072;Parent=NA12877_ch_T0000159;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=intron:NA12877_ch_T0000159:2;Name=RBMY1A3P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8812665	8812778	.	-	.	source_transcript=hg002_chrY_paternal_149.1;source_transcript_name=hg002_chrY_paternal_149.1;source_gene=hg002_chrY_paternal_149;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_149;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_149.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_149.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;alternative_source_transcripts=hg002_chrY_paternal_149.1,hg002_chrY_paternal_149.1;transcript_id=NA12877_ch_T0000159;gene_id=NA12877_ch_G0000072;Parent=NA12877_ch_T0000159;transcript_name=hg002_chrY_paternal_149.1;gene_name=RBMY1A3P;ID=exon:NA12877_ch_T0000159:3;Name=RBMY1A3P;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8819784	8824736	.	-	.	source_gene_common_name=TTTY20;source_gene=hg002_chrY_paternal_151;alternative_source_transcripts=hg002_chrY_paternal_151.1,hg002_chrY_paternal_151.1;gene_id=NA12877_ch_G0000073;gene_biotype=lncRNA;gene_name=TTTY20;gene_sources=liftoff;ID=NA12877_ch_G0000073;Name=TTTY20
NA12877_chrY	CAT	transcript	8819784	8824736	1000	-	.	source_transcript=hg002_chrY_paternal_151.1;source_transcript_name=hg002_chrY_paternal_151.1;source_gene=hg002_chrY_paternal_151;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_151;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_151.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_151.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY20;alternative_source_transcripts=hg002_chrY_paternal_151.1,hg002_chrY_paternal_151.1;transcript_id=NA12877_ch_T0000160;gene_id=NA12877_ch_G0000073;Parent=NA12877_ch_G0000073;transcript_name=hg002_chrY_paternal_151.1;gene_name=TTTY20;ID=NA12877_ch_T0000160;Name=TTTY20
NA12877_chrY	CAT	exon	8819784	8819960	.	-	.	source_transcript=hg002_chrY_paternal_151.1;source_transcript_name=hg002_chrY_paternal_151.1;source_gene=hg002_chrY_paternal_151;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_151;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_151.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_151.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY20;alternative_source_transcripts=hg002_chrY_paternal_151.1,hg002_chrY_paternal_151.1;transcript_id=NA12877_ch_T0000160;gene_id=NA12877_ch_G0000073;Parent=NA12877_ch_T0000160;transcript_name=hg002_chrY_paternal_151.1;gene_name=TTTY20;ID=exon:NA12877_ch_T0000160:0;Name=TTTY20;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8819961	8824654	.	-	.	source_transcript=hg002_chrY_paternal_151.1;source_transcript_name=hg002_chrY_paternal_151.1;source_gene=hg002_chrY_paternal_151;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_151;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_151.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_151.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY20;alternative_source_transcripts=hg002_chrY_paternal_151.1,hg002_chrY_paternal_151.1;transcript_id=NA12877_ch_T0000160;gene_id=NA12877_ch_G0000073;Parent=NA12877_ch_T0000160;transcript_name=hg002_chrY_paternal_151.1;gene_name=TTTY20;ID=intron:NA12877_ch_T0000160:0;Name=TTTY20;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8824655	8824736	.	-	.	source_transcript=hg002_chrY_paternal_151.1;source_transcript_name=hg002_chrY_paternal_151.1;source_gene=hg002_chrY_paternal_151;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_151;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_151.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_151.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY20;alternative_source_transcripts=hg002_chrY_paternal_151.1,hg002_chrY_paternal_151.1;transcript_id=NA12877_ch_T0000160;gene_id=NA12877_ch_G0000073;Parent=NA12877_ch_T0000160;transcript_name=hg002_chrY_paternal_151.1;gene_name=TTTY20;ID=exon:NA12877_ch_T0000160:1;Name=TTTY20;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8827368	8830164	.	+	.	source_gene_common_name=TSPY8;source_gene=hg002_chrY_paternal_152;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;gene_id=NA12877_ch_G0000074;gene_biotype=protein_coding;gene_name=TSPY8;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000074;Name=TSPY8
NA12877_chrY	CAT	transcript	8827368	8830164	100	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_G0000074;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=NA12877_ch_T0000161;Name=TSPY8
NA12877_chrY	CAT	exon	8827368	8827899	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000161:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8827414	8827899	.	+	0	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000161:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8827414	8827416	.	+	0	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=start_codon:NA12877_ch_T0000161;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8827900	8828506	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000161:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8828507	8828584	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000161:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8828507	8828584	.	+	0	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000161:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8828585	8828712	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000161:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8828713	8828824	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000161:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8828713	8828824	.	+	0	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000161:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8828825	8828925	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000161:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8828926	8829071	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000161:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8828926	8829071	.	+	2	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000161:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8829072	8829177	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000161:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8829178	8829259	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000161:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8829178	8829259	.	+	0	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000161:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8829260	8829953	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000161:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8829954	8830164	.	+	.	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000161:5;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8829954	8829976	.	+	2	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000161:5;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8829974	8829976	.	+	0	source_transcript=hg002_chrY_paternal_152.1;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.1,hg002_chrY_paternal_152.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000161;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000161;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=stop_codon:NA12877_ch_T0000161;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8827368	8830164	100	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_G0000074;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=NA12877_ch_T0000162;Name=TSPY8
NA12877_chrY	CAT	exon	8827368	8827899	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000162:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8827414	8827899	.	+	0	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000162:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8827414	8827416	.	+	0	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=start_codon:NA12877_ch_T0000162;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8827900	8828506	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000162:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8828507	8828584	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000162:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8828507	8828584	.	+	0	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000162:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8828585	8828712	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000162:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8828713	8828824	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000162:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8828713	8828824	.	+	0	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000162:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8828825	8828925	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000162:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8828926	8829071	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000162:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8828926	8829071	.	+	2	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000162:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8829072	8829166	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000162:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8829167	8829259	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000162:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8829167	8829229	.	+	0	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000162:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8829227	8829229	.	+	0	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=stop_codon:NA12877_ch_T0000162;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8829260	8829953	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000162:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8829954	8830164	.	+	.	source_transcript=hg002_chrY_paternal_152.2;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.2,hg002_chrY_paternal_152.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000162;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000162;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000162:5;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8827368	8830164	100	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_G0000074;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=NA12877_ch_T0000163;Name=TSPY8
NA12877_chrY	CAT	exon	8827368	8827899	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000163:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8827414	8827899	.	+	0	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000163:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8827414	8827416	.	+	0	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=start_codon:NA12877_ch_T0000163;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8827900	8828506	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000163:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8828507	8828584	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000163:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8828507	8828584	.	+	0	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000163:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8828585	8828712	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000163:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8828713	8828824	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000163:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8828713	8828824	.	+	0	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000163:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8828825	8828932	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000163:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8828933	8829071	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000163:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8828933	8829071	.	+	2	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000163:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8829072	8829177	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000163:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8829178	8829259	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000163:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8829178	8829229	.	+	1	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000163:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8829227	8829229	.	+	0	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=stop_codon:NA12877_ch_T0000163;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8829260	8829953	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000163:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8829954	8830164	.	+	.	source_transcript=hg002_chrY_paternal_152.3;source_transcript_name=hg002_chrY_paternal_152.4;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_152.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.3,hg002_chrY_paternal_152.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000163;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000163;transcript_name=hg002_chrY_paternal_152.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000163:5;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8827368	8830164	1000	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000164;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_G0000074;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=NA12877_ch_T0000164;Name=TSPY8
NA12877_chrY	CAT	exon	8827368	8827899	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000164;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000164;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=exon:NA12877_ch_T0000164:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8827900	8828506	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000164;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000164;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=intron:NA12877_ch_T0000164:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8828507	8828584	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000164;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000164;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=exon:NA12877_ch_T0000164:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8828585	8828712	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000164;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000164;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=intron:NA12877_ch_T0000164:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8828713	8828824	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000164;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000164;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=exon:NA12877_ch_T0000164:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8828825	8828932	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000164;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000164;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=intron:NA12877_ch_T0000164:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8828933	8829071	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000164;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000164;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=exon:NA12877_ch_T0000164:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8829072	8829166	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000164;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000164;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=intron:NA12877_ch_T0000164:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8829167	8829259	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000164;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000164;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=exon:NA12877_ch_T0000164:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8829260	8829953	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000164;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000164;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=intron:NA12877_ch_T0000164:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8829954	8830164	.	+	.	source_transcript=hg002_chrY_paternal_152.4;source_transcript_name=hg002_chrY_paternal_152.1;source_gene=hg002_chrY_paternal_152;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_152;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_152.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_152.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_152.4,hg002_chrY_paternal_152.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000164;gene_id=NA12877_ch_G0000074;Parent=NA12877_ch_T0000164;transcript_name=hg002_chrY_paternal_152.1;gene_name=TSPY8;ID=exon:NA12877_ch_T0000164:5;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8839453	8845065	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_153;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;gene_id=NA12877_ch_G0000075;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=NA12877_ch_G0000075;Name=FAM197Y3
NA12877_chrY	CAT	transcript	8839453	8845065	1000	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=NA12877_ch_T0000165;gene_id=NA12877_ch_G0000075;Parent=NA12877_ch_G0000075;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=NA12877_ch_T0000165;Name=FAM197Y3
NA12877_chrY	CAT	exon	8839453	8839512	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=NA12877_ch_T0000165;gene_id=NA12877_ch_G0000075;Parent=NA12877_ch_T0000165;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000165:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8839513	8843062	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=NA12877_ch_T0000165;gene_id=NA12877_ch_G0000075;Parent=NA12877_ch_T0000165;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000165:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8843063	8843221	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=NA12877_ch_T0000165;gene_id=NA12877_ch_G0000075;Parent=NA12877_ch_T0000165;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000165:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8843222	8844731	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=NA12877_ch_T0000165;gene_id=NA12877_ch_G0000075;Parent=NA12877_ch_T0000165;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000165:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8844732	8844877	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=NA12877_ch_T0000165;gene_id=NA12877_ch_G0000075;Parent=NA12877_ch_T0000165;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000165:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8844878	8844963	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=NA12877_ch_T0000165;gene_id=NA12877_ch_G0000075;Parent=NA12877_ch_T0000165;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000165:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8844964	8845065	.	-	.	source_transcript=hg002_chrY_paternal_153.1;source_transcript_name=hg002_chrY_paternal_153.1;source_gene=hg002_chrY_paternal_153;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_153;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_153.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_153.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_153.1,hg002_chrY_paternal_153.1;transcript_id=NA12877_ch_T0000165;gene_id=NA12877_ch_G0000075;Parent=NA12877_ch_T0000165;transcript_name=hg002_chrY_paternal_153.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000165:3;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8847680	8850476	.	+	.	source_gene_common_name=TSPY8;source_gene=hg002_chrY_paternal_154;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;gene_id=NA12877_ch_G0000076;gene_biotype=protein_coding;gene_name=TSPY8;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000076;Name=TSPY8
NA12877_chrY	CAT	transcript	8847680	8850476	100	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_G0000076;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=NA12877_ch_T0000166;Name=TSPY8
NA12877_chrY	CAT	exon	8847680	8848211	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000166:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8847726	8848211	.	+	0	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000166:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8847726	8847728	.	+	0	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=start_codon:NA12877_ch_T0000166;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8848212	8848818	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000166:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8848819	8848896	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000166:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8848819	8848896	.	+	0	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000166:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8848897	8849024	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000166:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8849025	8849136	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000166:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8849025	8849136	.	+	0	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000166:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8849137	8849237	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000166:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8849238	8849383	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000166:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8849238	8849383	.	+	2	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000166:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8849384	8849489	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000166:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8849490	8849571	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000166:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8849490	8849571	.	+	0	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000166:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8849572	8850265	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000166:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8850266	8850476	.	+	.	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000166:5;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8850266	8850288	.	+	2	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000166:5;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8850286	8850288	.	+	0	source_transcript=hg002_chrY_paternal_154.1;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.1,hg002_chrY_paternal_154.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000166;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000166;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=stop_codon:NA12877_ch_T0000166;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8847680	8850476	100	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_G0000076;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=NA12877_ch_T0000167;Name=TSPY8
NA12877_chrY	CAT	exon	8847680	8848211	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000167:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8847726	8848211	.	+	0	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000167:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8847726	8847728	.	+	0	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=start_codon:NA12877_ch_T0000167;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8848212	8848818	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000167:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8848819	8848896	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000167:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8848819	8848896	.	+	0	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000167:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8848897	8849024	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000167:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8849025	8849136	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000167:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8849025	8849136	.	+	0	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000167:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8849137	8849237	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000167:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8849238	8849383	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000167:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8849238	8849383	.	+	2	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000167:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8849384	8849478	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000167:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8849479	8849571	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000167:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8849479	8849541	.	+	0	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000167:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8849539	8849541	.	+	0	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=stop_codon:NA12877_ch_T0000167;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8849572	8850265	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000167:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8850266	8850476	.	+	.	source_transcript=hg002_chrY_paternal_154.2;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.2,hg002_chrY_paternal_154.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000167;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000167;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000167:5;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8847680	8850476	100	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_G0000076;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=NA12877_ch_T0000168;Name=TSPY8
NA12877_chrY	CAT	exon	8847680	8848211	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000168:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8847726	8848211	.	+	0	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000168:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8847726	8847728	.	+	0	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=start_codon:NA12877_ch_T0000168;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8848212	8848818	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000168:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8848819	8848896	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000168:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8848819	8848896	.	+	0	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000168:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8848897	8849024	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000168:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8849025	8849136	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000168:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8849025	8849136	.	+	0	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000168:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8849137	8849244	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000168:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8849245	8849383	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000168:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8849245	8849383	.	+	2	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000168:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8849384	8849489	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000168:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8849490	8849571	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000168:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8849490	8849541	.	+	1	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=CDS:NA12877_ch_T0000168:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8849539	8849541	.	+	0	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=stop_codon:NA12877_ch_T0000168;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8849572	8850265	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=intron:NA12877_ch_T0000168:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8850266	8850476	.	+	.	source_transcript=hg002_chrY_paternal_154.3;source_transcript_name=hg002_chrY_paternal_154.4;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_154.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.3,hg002_chrY_paternal_154.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000168;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000168;transcript_name=hg002_chrY_paternal_154.4;gene_name=TSPY8;ID=exon:NA12877_ch_T0000168:5;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8847680	8850476	1000	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000169;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_G0000076;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=NA12877_ch_T0000169;Name=TSPY8
NA12877_chrY	CAT	exon	8847680	8848211	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000169;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000169;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=exon:NA12877_ch_T0000169:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8848212	8848818	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000169;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000169;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=intron:NA12877_ch_T0000169:0;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8848819	8848896	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000169;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000169;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=exon:NA12877_ch_T0000169:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8848897	8849024	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000169;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000169;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=intron:NA12877_ch_T0000169:1;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8849025	8849136	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000169;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000169;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=exon:NA12877_ch_T0000169:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8849137	8849244	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000169;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000169;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=intron:NA12877_ch_T0000169:2;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8849245	8849383	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000169;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000169;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=exon:NA12877_ch_T0000169:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8849384	8849478	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000169;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000169;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=intron:NA12877_ch_T0000169:3;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8849479	8849571	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000169;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000169;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=exon:NA12877_ch_T0000169:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8849572	8850265	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000169;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000169;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=intron:NA12877_ch_T0000169:4;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8850266	8850476	.	+	.	source_transcript=hg002_chrY_paternal_154.4;source_transcript_name=hg002_chrY_paternal_154.1;source_gene=hg002_chrY_paternal_154;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_154;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_154.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_154.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=hg002_chrY_paternal_154.4,hg002_chrY_paternal_154.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000169;gene_id=NA12877_ch_G0000076;Parent=NA12877_ch_T0000169;transcript_name=hg002_chrY_paternal_154.1;gene_name=TSPY8;ID=exon:NA12877_ch_T0000169:5;Name=TSPY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8859779	8865389	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_169;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;gene_id=NA12877_ch_G0000077;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=NA12877_ch_G0000077;Name=FAM197Y3
NA12877_chrY	CAT	transcript	8859779	8865389	1000	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=NA12877_ch_T0000170;gene_id=NA12877_ch_G0000077;Parent=NA12877_ch_G0000077;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=NA12877_ch_T0000170;Name=FAM197Y3
NA12877_chrY	CAT	exon	8859779	8859838	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=NA12877_ch_T0000170;gene_id=NA12877_ch_G0000077;Parent=NA12877_ch_T0000170;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000170:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8859839	8863388	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=NA12877_ch_T0000170;gene_id=NA12877_ch_G0000077;Parent=NA12877_ch_T0000170;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000170:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8863389	8863547	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=NA12877_ch_T0000170;gene_id=NA12877_ch_G0000077;Parent=NA12877_ch_T0000170;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000170:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8863548	8865055	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=NA12877_ch_T0000170;gene_id=NA12877_ch_G0000077;Parent=NA12877_ch_T0000170;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000170:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8865056	8865201	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=NA12877_ch_T0000170;gene_id=NA12877_ch_G0000077;Parent=NA12877_ch_T0000170;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000170:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8865202	8865287	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=NA12877_ch_T0000170;gene_id=NA12877_ch_G0000077;Parent=NA12877_ch_T0000170;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000170:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8865288	8865389	.	-	.	source_transcript=hg002_chrY_paternal_169.1;source_transcript_name=hg002_chrY_paternal_169.1;source_gene=hg002_chrY_paternal_169;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_169;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_169.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_169.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_155.1,hg002_chrY_paternal_155.1;transcript_id=NA12877_ch_T0000170;gene_id=NA12877_ch_G0000077;Parent=NA12877_ch_T0000170;transcript_name=hg002_chrY_paternal_169.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000170:3;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8868004	8870818	.	+	.	source_gene_common_name=TSPY4;source_gene=hg002_chrY_paternal_216;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;gene_id=NA12877_ch_G0000078;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff;ID=NA12877_ch_G0000078;Name=TSPY4
NA12877_chrY	CAT	transcript	8868004	8870818	100	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_G0000078;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=NA12877_ch_T0000171;Name=TSPY4
NA12877_chrY	CAT	exon	8868004	8868553	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000171:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8868050	8868553	.	+	0	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000171:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8868050	8868052	.	+	0	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000171;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8868554	8869160	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000171:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869161	8869238	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000171:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8869161	8869238	.	+	0	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000171:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869239	8869366	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000171:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869367	8869478	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000171:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8869367	8869478	.	+	0	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000171:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869479	8869579	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000171:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869580	8869725	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000171:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8869580	8869725	.	+	2	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000171:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869726	8869831	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000171:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869832	8869913	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000171:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8869832	8869913	.	+	0	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000171:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869914	8870607	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000171:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8870608	8870818	.	+	.	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000171:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8870608	8870630	.	+	2	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000171:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8870628	8870630	.	+	0	source_transcript=hg002_chrY_paternal_216.1;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.1,hg002_chrY_paternal_156.1;transcript_id=NA12877_ch_T0000171;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000171;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000171;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8868004	8870818	100	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_G0000078;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=NA12877_ch_T0000172;Name=TSPY4
NA12877_chrY	CAT	exon	8868004	8868553	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000172:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8868050	8868553	.	+	0	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000172:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8868050	8868052	.	+	0	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000172;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8868554	8869160	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000172:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869161	8869238	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000172:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8869161	8869238	.	+	0	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000172:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869239	8869366	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000172:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869367	8869478	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000172:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8869367	8869478	.	+	0	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000172:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869479	8869579	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000172:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869580	8869725	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000172:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8869580	8869725	.	+	2	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000172:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869726	8869820	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000172:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869821	8869913	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000172:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8869821	8869883	.	+	0	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000172:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8869881	8869883	.	+	0	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000172;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869914	8870607	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000172:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8870608	8870818	.	+	.	source_transcript=hg002_chrY_paternal_216.2;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.2,hg002_chrY_paternal_156.2;transcript_id=NA12877_ch_T0000172;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000172;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000172:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8868004	8870818	100	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_G0000078;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=NA12877_ch_T0000173;Name=TSPY4
NA12877_chrY	CAT	exon	8868004	8868553	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000173:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8868050	8868553	.	+	0	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000173:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8868050	8868052	.	+	0	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000173;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8868554	8869160	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000173:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869161	8869238	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000173:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8869161	8869238	.	+	0	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000173:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869239	8869366	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000173:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869367	8869478	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000173:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8869367	8869478	.	+	0	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000173:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869479	8869586	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000173:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869587	8869725	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000173:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8869587	8869725	.	+	2	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000173:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869726	8869831	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000173:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869832	8869913	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000173:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8869832	8869883	.	+	1	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000173:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8869881	8869883	.	+	0	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000173;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869914	8870607	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000173:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8870608	8870818	.	+	.	source_transcript=hg002_chrY_paternal_216.3;source_transcript_name=hg002_chrY_paternal_216.4;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_216.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.3,hg002_chrY_paternal_156.3;transcript_id=NA12877_ch_T0000173;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000173;transcript_name=hg002_chrY_paternal_216.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000173:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8868004	8870818	1000	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;transcript_id=NA12877_ch_T0000174;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_G0000078;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=NA12877_ch_T0000174;Name=TSPY4
NA12877_chrY	CAT	exon	8868004	8868553	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;transcript_id=NA12877_ch_T0000174;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000174;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000174:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8868554	8869160	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;transcript_id=NA12877_ch_T0000174;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000174;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000174:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869161	8869238	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;transcript_id=NA12877_ch_T0000174;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000174;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000174:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869239	8869366	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;transcript_id=NA12877_ch_T0000174;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000174;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000174:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869367	8869478	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;transcript_id=NA12877_ch_T0000174;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000174;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000174:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869479	8869586	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;transcript_id=NA12877_ch_T0000174;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000174;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000174:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869587	8869725	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;transcript_id=NA12877_ch_T0000174;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000174;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000174:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869726	8869820	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;transcript_id=NA12877_ch_T0000174;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000174;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000174:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8869821	8869913	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;transcript_id=NA12877_ch_T0000174;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000174;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000174:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8869914	8870607	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;transcript_id=NA12877_ch_T0000174;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000174;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000174:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8870608	8870818	.	+	.	source_transcript=hg002_chrY_paternal_216.4;source_transcript_name=hg002_chrY_paternal_216.1;source_gene=hg002_chrY_paternal_216;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_216;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_216.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_216.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_156.4,hg002_chrY_paternal_156.4;transcript_id=NA12877_ch_T0000174;gene_id=NA12877_ch_G0000078;Parent=NA12877_ch_T0000174;transcript_name=hg002_chrY_paternal_216.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000174:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8880086	8885771	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_157;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;gene_id=NA12877_ch_G0000079;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000079;Name=FAM197Y2
NA12877_chrY	CAT	transcript	8880086	8885771	1000	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=NA12877_ch_T0000175;gene_id=NA12877_ch_G0000079;Parent=NA12877_ch_G0000079;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000175;Name=FAM197Y2
NA12877_chrY	CAT	exon	8880086	8880145	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=NA12877_ch_T0000175;gene_id=NA12877_ch_G0000079;Parent=NA12877_ch_T0000175;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000175:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8880146	8883700	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=NA12877_ch_T0000175;gene_id=NA12877_ch_G0000079;Parent=NA12877_ch_T0000175;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000175:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8883701	8883859	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=NA12877_ch_T0000175;gene_id=NA12877_ch_G0000079;Parent=NA12877_ch_T0000175;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000175:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8883860	8885348	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=NA12877_ch_T0000175;gene_id=NA12877_ch_G0000079;Parent=NA12877_ch_T0000175;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000175:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8885349	8885494	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=NA12877_ch_T0000175;gene_id=NA12877_ch_G0000079;Parent=NA12877_ch_T0000175;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000175:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8885495	8885580	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=NA12877_ch_T0000175;gene_id=NA12877_ch_G0000079;Parent=NA12877_ch_T0000175;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000175:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8885581	8885771	.	-	.	source_transcript=hg002_chrY_paternal_157.1;source_transcript_name=hg002_chrY_paternal_157.1;source_gene=hg002_chrY_paternal_157;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_157;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_157.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_157.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_157.1,hg002_chrY_paternal_157.1;transcript_id=NA12877_ch_T0000175;gene_id=NA12877_ch_G0000079;Parent=NA12877_ch_T0000175;transcript_name=hg002_chrY_paternal_157.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000175:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8888296	8891092	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_158;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;gene_id=NA12877_ch_G0000080;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000080;Name=TSPY1
NA12877_chrY	CAT	transcript	8888296	8891092	100	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_G0000080;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=NA12877_ch_T0000176;Name=TSPY1
NA12877_chrY	CAT	exon	8888296	8888827	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000176:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8888342	8888827	.	+	0	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000176:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8888342	8888344	.	+	0	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000176;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8888828	8889434	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000176:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889435	8889512	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000176:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8889435	8889512	.	+	0	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000176:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8889513	8889640	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000176:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889641	8889752	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000176:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8889641	8889752	.	+	0	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000176:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8889753	8889853	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000176:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889854	8889999	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000176:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8889854	8889999	.	+	2	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000176:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8890000	8890094	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000176:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8890095	8890187	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000176:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8890095	8890157	.	+	0	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000176:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8890155	8890157	.	+	0	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000176;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8890188	8890881	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000176:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8890882	8891092	.	+	.	source_transcript=hg002_chrY_paternal_158.1;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.1,hg002_chrY_paternal_158.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000176;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000176;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000176:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8888296	8891092	100	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_G0000080;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=NA12877_ch_T0000177;Name=TSPY1
NA12877_chrY	CAT	exon	8888296	8888428	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000177:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8888342	8888428	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000177:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8888342	8888344	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000177;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8888429	8888689	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000177:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8888690	8888827	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000177:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8888690	8888827	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000177:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8888828	8889434	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000177:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889435	8889512	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000177:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8889435	8889512	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000177:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8889513	8889640	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000177:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889641	8889752	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000177:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8889641	8889752	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000177:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8889753	8889853	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000177:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889854	8889999	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000177:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8889854	8889999	.	+	2	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000177:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8890000	8890105	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000177:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8890106	8890187	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000177:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8890106	8890187	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000177:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8890188	8890881	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000177:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8890882	8891092	.	+	.	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000177:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8890882	8890904	.	+	2	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000177:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8890902	8890904	.	+	0	source_transcript=hg002_chrY_paternal_158.2;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.2,hg002_chrY_paternal_158.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000177;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000177;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000177;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8888296	8891092	100	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_G0000080;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=NA12877_ch_T0000178;Name=TSPY1
NA12877_chrY	CAT	exon	8888296	8888827	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000178:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8888342	8888827	.	+	0	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000178:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8888342	8888344	.	+	0	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000178;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8888828	8889434	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000178:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889435	8889512	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000178:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8889435	8889512	.	+	0	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000178:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8889513	8889640	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000178:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889641	8889752	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000178:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8889641	8889752	.	+	0	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000178:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8889753	8889853	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000178:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889854	8889999	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000178:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8889854	8889999	.	+	2	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000178:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8890000	8890105	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000178:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8890106	8890187	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000178:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8890106	8890187	.	+	0	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000178:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8890188	8890881	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000178:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8890882	8891092	.	+	.	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000178:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8890882	8890904	.	+	2	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000178:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8890902	8890904	.	+	0	source_transcript=hg002_chrY_paternal_158.3;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.3,hg002_chrY_paternal_158.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000178;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000178;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000178;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8888296	8891092	100	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_G0000080;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=NA12877_ch_T0000179;Name=TSPY1
NA12877_chrY	CAT	exon	8888296	8888827	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000179:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8888342	8888827	.	+	0	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000179:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8888342	8888344	.	+	0	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000179;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8888828	8889434	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000179:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889435	8889512	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000179:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8889435	8889512	.	+	0	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000179:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8889513	8889640	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000179:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889641	8889752	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000179:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8889641	8889752	.	+	0	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000179:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8889753	8889860	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000179:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889861	8889999	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000179:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8889861	8889999	.	+	2	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000179:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8890000	8890105	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000179:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8890106	8890187	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000179:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8890106	8890157	.	+	1	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000179:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8890155	8890157	.	+	0	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000179;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8890188	8890881	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000179:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8890882	8891092	.	+	.	source_transcript=hg002_chrY_paternal_158.4;source_transcript_name=hg002_chrY_paternal_158.5;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_158.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.4,hg002_chrY_paternal_158.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000179;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000179;transcript_name=hg002_chrY_paternal_158.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000179:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8888296	8891092	1000	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000180;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_G0000080;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=NA12877_ch_T0000180;Name=TSPY1
NA12877_chrY	CAT	exon	8888296	8888827	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000180;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000180;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000180:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8888828	8889434	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000180;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000180;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000180:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889435	8889512	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000180;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000180;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000180:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8889513	8889640	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000180;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000180;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000180:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889641	8889752	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000180;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000180;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000180:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8889753	8889860	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000180;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000180;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000180:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8889861	8889999	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000180;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000180;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000180:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8890000	8890094	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000180;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000180;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000180:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8890095	8890187	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000180;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000180;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000180:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8890188	8890881	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000180;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000180;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000180:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8890882	8891092	.	+	.	source_transcript=hg002_chrY_paternal_158.5;source_transcript_name=hg002_chrY_paternal_158.1;source_gene=hg002_chrY_paternal_158;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_158;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_158.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_158.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_158.5,hg002_chrY_paternal_158.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000180;gene_id=NA12877_ch_G0000080;Parent=NA12877_ch_T0000180;transcript_name=hg002_chrY_paternal_158.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000180:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8900383	8906077	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_159;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;gene_id=NA12877_ch_G0000081;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000081;Name=FAM197Y2
NA12877_chrY	CAT	transcript	8900383	8906077	1000	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=NA12877_ch_T0000181;gene_id=NA12877_ch_G0000081;Parent=NA12877_ch_G0000081;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000181;Name=FAM197Y2
NA12877_chrY	CAT	exon	8900383	8900442	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=NA12877_ch_T0000181;gene_id=NA12877_ch_G0000081;Parent=NA12877_ch_T0000181;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000181:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8900443	8903991	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=NA12877_ch_T0000181;gene_id=NA12877_ch_G0000081;Parent=NA12877_ch_T0000181;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000181:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8903992	8904150	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=NA12877_ch_T0000181;gene_id=NA12877_ch_G0000081;Parent=NA12877_ch_T0000181;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000181:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8904151	8905654	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=NA12877_ch_T0000181;gene_id=NA12877_ch_G0000081;Parent=NA12877_ch_T0000181;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000181:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8905655	8905800	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=NA12877_ch_T0000181;gene_id=NA12877_ch_G0000081;Parent=NA12877_ch_T0000181;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000181:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8905801	8905886	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=NA12877_ch_T0000181;gene_id=NA12877_ch_G0000081;Parent=NA12877_ch_T0000181;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000181:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8905887	8906077	.	-	.	source_transcript=hg002_chrY_paternal_159.1;source_transcript_name=hg002_chrY_paternal_159.1;source_gene=hg002_chrY_paternal_159;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_159;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_159.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_159.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_159.1,hg002_chrY_paternal_159.1;transcript_id=NA12877_ch_T0000181;gene_id=NA12877_ch_G0000081;Parent=NA12877_ch_T0000181;transcript_name=hg002_chrY_paternal_159.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000181:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8908601	8911415	.	+	.	source_gene_common_name=TSPY4;source_gene=hg002_chrY_paternal_160;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;gene_id=NA12877_ch_G0000082;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000082;Name=TSPY4
NA12877_chrY	CAT	transcript	8908601	8911415	100	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_G0000082;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=NA12877_ch_T0000182;Name=TSPY4
NA12877_chrY	CAT	exon	8908601	8909150	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000182:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8908647	8909150	.	+	0	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000182:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8908647	8908649	.	+	0	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000182;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8909151	8909757	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000182:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8909758	8909835	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000182:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8909758	8909835	.	+	0	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000182:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8909836	8909963	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000182:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8909964	8910075	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000182:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8909964	8910075	.	+	0	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000182:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8910076	8910176	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000182:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8910177	8910322	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000182:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8910177	8910322	.	+	2	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000182:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8910323	8910428	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000182:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8910429	8910510	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000182:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8910429	8910510	.	+	0	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000182:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8910511	8911204	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000182:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8911205	8911415	.	+	.	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000182:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8911205	8911227	.	+	2	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000182:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8911225	8911227	.	+	0	source_transcript=hg002_chrY_paternal_160.1;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.1,hg002_chrY_paternal_160.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000182;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000182;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000182;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8908601	8911415	100	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_G0000082;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=NA12877_ch_T0000183;Name=TSPY4
NA12877_chrY	CAT	exon	8908601	8909150	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000183:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8908647	8909150	.	+	0	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000183:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8908647	8908649	.	+	0	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000183;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8909151	8909757	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000183:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8909758	8909835	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000183:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8909758	8909835	.	+	0	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000183:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8909836	8909963	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000183:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8909964	8910075	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000183:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8909964	8910075	.	+	0	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000183:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8910076	8910176	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000183:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8910177	8910322	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000183:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8910177	8910322	.	+	2	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000183:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8910323	8910417	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000183:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8910418	8910510	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000183:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8910418	8910480	.	+	0	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000183:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8910478	8910480	.	+	0	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000183;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8910511	8911204	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000183:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8911205	8911415	.	+	.	source_transcript=hg002_chrY_paternal_160.2;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.2,hg002_chrY_paternal_160.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000183;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000183;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000183:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8908601	8911415	100	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_G0000082;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=NA12877_ch_T0000184;Name=TSPY4
NA12877_chrY	CAT	exon	8908601	8909150	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000184:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8908647	8909150	.	+	0	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000184:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8908647	8908649	.	+	0	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000184;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8909151	8909757	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000184:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8909758	8909835	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000184:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8909758	8909835	.	+	0	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000184:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8909836	8909963	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000184:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8909964	8910075	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000184:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8909964	8910075	.	+	0	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000184:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8910076	8910183	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000184:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8910184	8910322	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000184:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8910184	8910322	.	+	2	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000184:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8910323	8910428	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000184:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8910429	8910510	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000184:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8910429	8910480	.	+	1	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000184:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8910478	8910480	.	+	0	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000184;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8910511	8911204	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000184:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8911205	8911415	.	+	.	source_transcript=hg002_chrY_paternal_160.3;source_transcript_name=hg002_chrY_paternal_160.4;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_160.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.3,hg002_chrY_paternal_160.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000184;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000184;transcript_name=hg002_chrY_paternal_160.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000184:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8908601	8911415	1000	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000185;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_G0000082;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=NA12877_ch_T0000185;Name=TSPY4
NA12877_chrY	CAT	exon	8908601	8909150	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000185;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000185;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000185:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8909151	8909757	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000185;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000185;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000185:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8909758	8909835	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000185;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000185;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000185:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8909836	8909963	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000185;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000185;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000185:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8909964	8910075	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000185;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000185;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000185:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8910076	8910183	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000185;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000185;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000185:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8910184	8910322	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000185;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000185;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000185:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8910323	8910417	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000185;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000185;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000185:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8910418	8910510	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000185;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000185;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000185:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8910511	8911204	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000185;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000185;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000185:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8911205	8911415	.	+	.	source_transcript=hg002_chrY_paternal_160.4;source_transcript_name=hg002_chrY_paternal_160.1;source_gene=hg002_chrY_paternal_160;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_160;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_160.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_160.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_160.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000185;gene_id=NA12877_ch_G0000082;Parent=NA12877_ch_T0000185;transcript_name=hg002_chrY_paternal_160.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000185:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8920710	8926385	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_165;gene_id=NA12877_ch_G0000083;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff,transMap;ID=NA12877_ch_G0000083;Name=FAM197Y2
NA12877_chrY	CAT	transcript	8920710	8926385	1000	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000186;gene_id=NA12877_ch_G0000083;Parent=NA12877_ch_G0000083;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000186;Name=FAM197Y2
NA12877_chrY	CAT	exon	8920710	8920769	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000186;gene_id=NA12877_ch_G0000083;Parent=NA12877_ch_T0000186;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000186:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8920770	8924319	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000186;gene_id=NA12877_ch_G0000083;Parent=NA12877_ch_T0000186;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000186:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8924320	8924478	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000186;gene_id=NA12877_ch_G0000083;Parent=NA12877_ch_T0000186;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000186:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8924479	8925962	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000186;gene_id=NA12877_ch_G0000083;Parent=NA12877_ch_T0000186;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000186:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8925963	8926108	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000186;gene_id=NA12877_ch_G0000083;Parent=NA12877_ch_T0000186;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000186:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8926109	8926194	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000186;gene_id=NA12877_ch_G0000083;Parent=NA12877_ch_T0000186;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000186:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8926195	8926385	.	-	.	source_transcript=hg002_chrY_paternal_165.1;source_transcript_name=hg002_chrY_paternal_165.1;source_gene=hg002_chrY_paternal_165;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_165;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_165.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_165.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000186;gene_id=NA12877_ch_G0000083;Parent=NA12877_ch_T0000186;transcript_name=hg002_chrY_paternal_165.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000186:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8928910	8931706	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_192;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;gene_id=NA12877_ch_G0000084;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff;ID=NA12877_ch_G0000084;Name=TSPY10
NA12877_chrY	CAT	transcript	8928910	8931706	100	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_G0000084;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=NA12877_ch_T0000187;Name=TSPY10
NA12877_chrY	CAT	exon	8928910	8929441	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000187:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8928956	8929441	.	+	0	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000187:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8928956	8928958	.	+	0	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000187;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8929442	8930048	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000187:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930049	8930126	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000187:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8930049	8930126	.	+	0	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000187:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930127	8930254	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000187:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930255	8930366	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000187:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8930255	8930366	.	+	0	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000187:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930367	8930467	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000187:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930468	8930613	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000187:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8930468	8930613	.	+	2	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000187:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930614	8930719	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000187:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930720	8930801	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000187:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8930720	8930801	.	+	0	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000187:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930802	8931495	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000187:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8931496	8931706	.	+	.	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000187:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8931496	8931518	.	+	2	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000187:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8931516	8931518	.	+	0	source_transcript=hg002_chrY_paternal_192.1;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.1,hg002_chrY_paternal_162.1;transcript_id=NA12877_ch_T0000187;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000187;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000187;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8928910	8931706	100	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_G0000084;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=NA12877_ch_T0000188;Name=TSPY10
NA12877_chrY	CAT	exon	8928910	8929441	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000188:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8928956	8929441	.	+	0	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000188:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8928956	8928958	.	+	0	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000188;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8929442	8930048	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000188:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930049	8930126	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000188:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8930049	8930126	.	+	0	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000188:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930127	8930254	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000188:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930255	8930366	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000188:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8930255	8930366	.	+	0	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000188:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930367	8930467	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000188:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930468	8930613	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000188:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8930468	8930613	.	+	2	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000188:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930614	8930708	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000188:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930709	8930801	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000188:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8930709	8930771	.	+	0	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000188:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8930769	8930771	.	+	0	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000188;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930802	8931495	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000188:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8931496	8931706	.	+	.	source_transcript=hg002_chrY_paternal_192.2;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.2,hg002_chrY_paternal_162.2;transcript_id=NA12877_ch_T0000188;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000188;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000188:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8928910	8931706	100	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_G0000084;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=NA12877_ch_T0000189;Name=TSPY10
NA12877_chrY	CAT	exon	8928910	8929441	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000189:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8928956	8929441	.	+	0	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000189:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8928956	8928958	.	+	0	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000189;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8929442	8930048	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000189:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930049	8930126	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000189:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8930049	8930126	.	+	0	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000189:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930127	8930254	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000189:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930255	8930366	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000189:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8930255	8930366	.	+	0	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000189:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930367	8930474	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000189:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930475	8930613	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000189:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8930475	8930613	.	+	2	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000189:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930614	8930719	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000189:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930720	8930801	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000189:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8930720	8930771	.	+	1	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000189:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8930769	8930771	.	+	0	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000189;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930802	8931495	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000189:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8931496	8931706	.	+	.	source_transcript=hg002_chrY_paternal_192.3;source_transcript_name=hg002_chrY_paternal_192.4;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_192.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.3;transcript_id=NA12877_ch_T0000189;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000189;transcript_name=hg002_chrY_paternal_192.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000189:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8928910	8931706	1000	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4;transcript_id=NA12877_ch_T0000190;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_G0000084;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=NA12877_ch_T0000190;Name=TSPY10
NA12877_chrY	CAT	exon	8928910	8929441	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4;transcript_id=NA12877_ch_T0000190;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000190;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000190:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8929442	8930048	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4;transcript_id=NA12877_ch_T0000190;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000190;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000190:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930049	8930126	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4;transcript_id=NA12877_ch_T0000190;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000190;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000190:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930127	8930254	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4;transcript_id=NA12877_ch_T0000190;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000190;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000190:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930255	8930366	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4;transcript_id=NA12877_ch_T0000190;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000190;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000190:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930367	8930474	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4;transcript_id=NA12877_ch_T0000190;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000190;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000190:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930475	8930613	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4;transcript_id=NA12877_ch_T0000190;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000190;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000190:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930614	8930708	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4;transcript_id=NA12877_ch_T0000190;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000190;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000190:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8930709	8930801	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4;transcript_id=NA12877_ch_T0000190;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000190;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000190:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8930802	8931495	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4;transcript_id=NA12877_ch_T0000190;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000190;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000190:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8931496	8931706	.	+	.	source_transcript=hg002_chrY_paternal_192.4;source_transcript_name=hg002_chrY_paternal_192.1;source_gene=hg002_chrY_paternal_192;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_192;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_192.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_192.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_166.4;transcript_id=NA12877_ch_T0000190;gene_id=NA12877_ch_G0000084;Parent=NA12877_ch_T0000190;transcript_name=hg002_chrY_paternal_192.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000190:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8940997	8946682	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_173;alternative_source_transcripts=hg002_chrY_paternal_163.1;gene_id=NA12877_ch_G0000085;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000085;Name=FAM197Y2
NA12877_chrY	CAT	transcript	8940997	8946682	1000	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1;transcript_id=NA12877_ch_T0000191;gene_id=NA12877_ch_G0000085;Parent=NA12877_ch_G0000085;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000191;Name=FAM197Y2
NA12877_chrY	CAT	exon	8940997	8941056	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1;transcript_id=NA12877_ch_T0000191;gene_id=NA12877_ch_G0000085;Parent=NA12877_ch_T0000191;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000191:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8941057	8944600	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1;transcript_id=NA12877_ch_T0000191;gene_id=NA12877_ch_G0000085;Parent=NA12877_ch_T0000191;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000191:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8944601	8944759	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1;transcript_id=NA12877_ch_T0000191;gene_id=NA12877_ch_G0000085;Parent=NA12877_ch_T0000191;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000191:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8944760	8946259	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1;transcript_id=NA12877_ch_T0000191;gene_id=NA12877_ch_G0000085;Parent=NA12877_ch_T0000191;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000191:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8946260	8946405	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1;transcript_id=NA12877_ch_T0000191;gene_id=NA12877_ch_G0000085;Parent=NA12877_ch_T0000191;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000191:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8946406	8946491	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1;transcript_id=NA12877_ch_T0000191;gene_id=NA12877_ch_G0000085;Parent=NA12877_ch_T0000191;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000191:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8946492	8946682	.	-	.	source_transcript=hg002_chrY_paternal_173.1;source_transcript_name=hg002_chrY_paternal_173.1;source_gene=hg002_chrY_paternal_173;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_173;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_173.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_163.1;transcript_id=NA12877_ch_T0000191;gene_id=NA12877_ch_G0000085;Parent=NA12877_ch_T0000191;transcript_name=hg002_chrY_paternal_173.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000191:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8949206	8952002	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_168;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;gene_id=NA12877_ch_G0000086;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000086;Name=TSPY10
NA12877_chrY	CAT	transcript	8949206	8952002	100	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_G0000086;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=NA12877_ch_T0000192;Name=TSPY10
NA12877_chrY	CAT	exon	8949206	8949737	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000192:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8949252	8949737	.	+	0	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000192:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8949252	8949254	.	+	0	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000192;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8949738	8950344	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000192:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8950345	8950422	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000192:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8950345	8950422	.	+	0	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000192:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8950423	8950550	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000192:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8950551	8950662	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000192:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8950551	8950662	.	+	0	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000192:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8950663	8950763	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000192:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8950764	8950909	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000192:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8950764	8950909	.	+	2	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000192:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8950910	8951015	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000192:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8951016	8951097	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000192:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8951016	8951097	.	+	0	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000192:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8951098	8951791	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000192:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8951792	8952002	.	+	.	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000192:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8951792	8951814	.	+	2	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000192:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8951812	8951814	.	+	0	source_transcript=hg002_chrY_paternal_168.1;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.1,hg002_chrY_paternal_164.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000192;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000192;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000192;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8949206	8952002	100	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_G0000086;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=NA12877_ch_T0000193;Name=TSPY10
NA12877_chrY	CAT	exon	8949206	8949737	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000193:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8949252	8949737	.	+	0	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000193:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8949252	8949254	.	+	0	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000193;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8949738	8950344	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000193:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8950345	8950422	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000193:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8950345	8950422	.	+	0	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000193:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8950423	8950550	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000193:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8950551	8950662	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000193:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8950551	8950662	.	+	0	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000193:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8950663	8950763	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000193:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8950764	8950909	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000193:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8950764	8950909	.	+	2	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000193:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8950910	8951004	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000193:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8951005	8951097	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000193:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8951005	8951067	.	+	0	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000193:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8951065	8951067	.	+	0	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000193;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8951098	8951791	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000193:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8951792	8952002	.	+	.	source_transcript=hg002_chrY_paternal_168.2;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.2,hg002_chrY_paternal_164.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000193;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000193;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000193:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8949206	8952002	100	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_G0000086;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=NA12877_ch_T0000194;Name=TSPY10
NA12877_chrY	CAT	exon	8949206	8949737	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000194:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8949252	8949737	.	+	0	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000194:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8949252	8949254	.	+	0	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000194;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8949738	8950344	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000194:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8950345	8950422	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000194:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8950345	8950422	.	+	0	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000194:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8950423	8950550	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000194:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8950551	8950662	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000194:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8950551	8950662	.	+	0	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000194:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8950663	8950770	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000194:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8950771	8950909	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000194:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8950771	8950909	.	+	2	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000194:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8950910	8951015	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000194:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8951016	8951097	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000194:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8951016	8951067	.	+	1	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000194:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8951065	8951067	.	+	0	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000194;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8951098	8951791	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000194:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8951792	8952002	.	+	.	source_transcript=hg002_chrY_paternal_168.3;source_transcript_name=hg002_chrY_paternal_168.4;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_168.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_168.3,hg002_chrY_paternal_164.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000194;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000194;transcript_name=hg002_chrY_paternal_168.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000194:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8949206	8952002	1000	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000195;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_G0000086;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=NA12877_ch_T0000195;Name=TSPY10
NA12877_chrY	CAT	exon	8949206	8949737	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000195;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000195;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000195:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8949738	8950344	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000195;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000195;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000195:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8950345	8950422	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000195;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000195;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000195:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8950423	8950550	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000195;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000195;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000195:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8950551	8950662	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000195;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000195;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000195:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8950663	8950770	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000195;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000195;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000195:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8950771	8950909	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000195;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000195;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000195:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8950910	8951004	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000195;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000195;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000195:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8951005	8951097	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000195;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000195;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000195:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8951098	8951791	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000195;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000195;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000195:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8951792	8952002	.	+	.	source_transcript=hg002_chrY_paternal_168.4;source_transcript_name=hg002_chrY_paternal_168.1;source_gene=hg002_chrY_paternal_168;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_168;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_168.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_168.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_164.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000195;gene_id=NA12877_ch_G0000086;Parent=NA12877_ch_T0000195;transcript_name=hg002_chrY_paternal_168.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000195:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8961265	8966874	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_167;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_167.1;gene_id=NA12877_ch_G0000087;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=NA12877_ch_G0000087;Name=FAM197Y3
NA12877_chrY	CAT	transcript	8961265	8966874	1000	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_167.1;transcript_id=NA12877_ch_T0000196;gene_id=NA12877_ch_G0000087;Parent=NA12877_ch_G0000087;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=NA12877_ch_T0000196;Name=FAM197Y3
NA12877_chrY	CAT	exon	8961265	8961324	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_167.1;transcript_id=NA12877_ch_T0000196;gene_id=NA12877_ch_G0000087;Parent=NA12877_ch_T0000196;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000196:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8961325	8964875	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_167.1;transcript_id=NA12877_ch_T0000196;gene_id=NA12877_ch_G0000087;Parent=NA12877_ch_T0000196;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000196:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8964876	8965034	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_167.1;transcript_id=NA12877_ch_T0000196;gene_id=NA12877_ch_G0000087;Parent=NA12877_ch_T0000196;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000196:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8965035	8966540	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_167.1;transcript_id=NA12877_ch_T0000196;gene_id=NA12877_ch_G0000087;Parent=NA12877_ch_T0000196;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000196:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8966541	8966686	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_167.1;transcript_id=NA12877_ch_T0000196;gene_id=NA12877_ch_G0000087;Parent=NA12877_ch_T0000196;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000196:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8966687	8966772	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_167.1;transcript_id=NA12877_ch_T0000196;gene_id=NA12877_ch_G0000087;Parent=NA12877_ch_T0000196;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000196:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8966773	8966874	.	-	.	source_transcript=hg002_chrY_paternal_167.1;source_transcript_name=hg002_chrY_paternal_167.1;source_gene=hg002_chrY_paternal_167;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_167;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_167.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_167.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1,hg002_chrY_paternal_167.1;transcript_id=NA12877_ch_T0000196;gene_id=NA12877_ch_G0000087;Parent=NA12877_ch_T0000196;transcript_name=hg002_chrY_paternal_167.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000196:3;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8969487	8972283	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_172;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;gene_id=NA12877_ch_G0000088;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000088;Name=TSPY10
NA12877_chrY	CAT	transcript	8969487	8972283	100	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_G0000088;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=NA12877_ch_T0000197;Name=TSPY10
NA12877_chrY	CAT	exon	8969487	8970018	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000197:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8969533	8970018	.	+	0	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000197:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8969533	8969535	.	+	0	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000197;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8970019	8970625	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000197:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8970626	8970703	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000197:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8970626	8970703	.	+	0	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000197:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8970704	8970831	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000197:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8970832	8970943	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000197:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8970832	8970943	.	+	0	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000197:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8970944	8971044	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000197:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8971045	8971190	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000197:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8971045	8971190	.	+	2	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000197:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8971191	8971296	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000197:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8971297	8971378	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000197:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8971297	8971378	.	+	0	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000197:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8971379	8972072	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000197:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8972073	8972283	.	+	.	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000197:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8972073	8972095	.	+	2	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000197:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8972093	8972095	.	+	0	source_transcript=hg002_chrY_paternal_172.1;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.1,hg002_chrY_paternal_168.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000197;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000197;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000197;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8969487	8972283	100	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_G0000088;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=NA12877_ch_T0000198;Name=TSPY10
NA12877_chrY	CAT	exon	8969487	8970018	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000198:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8969533	8970018	.	+	0	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000198:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8969533	8969535	.	+	0	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000198;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8970019	8970625	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000198:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8970626	8970703	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000198:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8970626	8970703	.	+	0	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000198:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8970704	8970831	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000198:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8970832	8970943	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000198:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8970832	8970943	.	+	0	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000198:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8970944	8971044	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000198:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8971045	8971190	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000198:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8971045	8971190	.	+	2	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000198:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8971191	8971285	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000198:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8971286	8971378	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000198:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8971286	8971348	.	+	0	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000198:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8971346	8971348	.	+	0	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000198;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8971379	8972072	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000198:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8972073	8972283	.	+	.	source_transcript=hg002_chrY_paternal_172.2;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.2,hg002_chrY_paternal_168.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000198;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000198;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000198:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8969487	8972283	100	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_G0000088;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=NA12877_ch_T0000199;Name=TSPY10
NA12877_chrY	CAT	exon	8969487	8970018	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000199:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8969533	8970018	.	+	0	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000199:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8969533	8969535	.	+	0	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000199;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8970019	8970625	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000199:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8970626	8970703	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000199:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8970626	8970703	.	+	0	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000199:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8970704	8970831	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000199:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8970832	8970943	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000199:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8970832	8970943	.	+	0	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000199:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8970944	8971051	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000199:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8971052	8971190	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000199:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8971052	8971190	.	+	2	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000199:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8971191	8971296	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000199:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8971297	8971378	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000199:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8971297	8971348	.	+	1	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000199:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8971346	8971348	.	+	0	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000199;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8971379	8972072	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000199:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8972073	8972283	.	+	.	source_transcript=hg002_chrY_paternal_172.3;source_transcript_name=hg002_chrY_paternal_172.4;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_172.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.3,hg002_chrY_paternal_168.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000199;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000199;transcript_name=hg002_chrY_paternal_172.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000199:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8969487	8972283	1000	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000200;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_G0000088;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=NA12877_ch_T0000200;Name=TSPY10
NA12877_chrY	CAT	exon	8969487	8970018	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000200;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000200;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000200:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8970019	8970625	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000200;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000200;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000200:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8970626	8970703	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000200;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000200;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000200:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8970704	8970831	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000200;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000200;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000200:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8970832	8970943	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000200;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000200;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000200:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8970944	8971051	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000200;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000200;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000200:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8971052	8971190	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000200;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000200;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000200:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8971191	8971285	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000200;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000200;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000200:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8971286	8971378	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000200;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000200;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000200:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8971379	8972072	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000200;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000200;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000200:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8972073	8972283	.	+	.	source_transcript=hg002_chrY_paternal_172.4;source_transcript_name=hg002_chrY_paternal_172.1;source_gene=hg002_chrY_paternal_172;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_172;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_172.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_172.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_170.4,hg002_chrY_paternal_168.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000200;gene_id=NA12877_ch_G0000088;Parent=NA12877_ch_T0000200;transcript_name=hg002_chrY_paternal_172.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000200:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8981555	8987157	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_189;alternative_source_transcripts=hg002_chrY_paternal_169.1;gene_id=NA12877_ch_G0000089;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=NA12877_ch_G0000089;Name=FAM197Y3
NA12877_chrY	CAT	transcript	8981555	8987157	1000	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1;transcript_id=NA12877_ch_T0000201;gene_id=NA12877_ch_G0000089;Parent=NA12877_ch_G0000089;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=NA12877_ch_T0000201;Name=FAM197Y3
NA12877_chrY	CAT	exon	8981555	8981614	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1;transcript_id=NA12877_ch_T0000201;gene_id=NA12877_ch_G0000089;Parent=NA12877_ch_T0000201;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000201:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8981615	8985162	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1;transcript_id=NA12877_ch_T0000201;gene_id=NA12877_ch_G0000089;Parent=NA12877_ch_T0000201;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000201:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8985163	8985321	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1;transcript_id=NA12877_ch_T0000201;gene_id=NA12877_ch_G0000089;Parent=NA12877_ch_T0000201;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000201:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8985322	8986823	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1;transcript_id=NA12877_ch_T0000201;gene_id=NA12877_ch_G0000089;Parent=NA12877_ch_T0000201;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000201:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8986824	8986969	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1;transcript_id=NA12877_ch_T0000201;gene_id=NA12877_ch_G0000089;Parent=NA12877_ch_T0000201;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000201:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8986970	8987055	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1;transcript_id=NA12877_ch_T0000201;gene_id=NA12877_ch_G0000089;Parent=NA12877_ch_T0000201;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000201:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8987056	8987157	.	-	.	source_transcript=hg002_chrY_paternal_189.1;source_transcript_name=hg002_chrY_paternal_189.1;source_gene=hg002_chrY_paternal_189;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_189;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_189.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_169.1;transcript_id=NA12877_ch_T0000201;gene_id=NA12877_ch_G0000089;Parent=NA12877_ch_T0000201;transcript_name=hg002_chrY_paternal_189.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000201:3;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	8989766	8992562	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_190;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;gene_id=NA12877_ch_G0000090;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff;ID=NA12877_ch_G0000090;Name=TSPY10
NA12877_chrY	CAT	transcript	8989766	8992562	100	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_G0000090;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=NA12877_ch_T0000202;Name=TSPY10
NA12877_chrY	CAT	exon	8989766	8990297	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000202:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8989812	8990297	.	+	0	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000202:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8989812	8989814	.	+	0	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000202;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8990298	8990904	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000202:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8990905	8990982	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000202:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8990905	8990982	.	+	0	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000202:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8990983	8991110	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000202:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8991111	8991222	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000202:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8991111	8991222	.	+	0	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000202:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8991223	8991323	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000202:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8991324	8991469	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000202:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8991324	8991469	.	+	2	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000202:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8991470	8991575	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000202:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8991576	8991657	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000202:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8991576	8991657	.	+	0	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000202:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8991658	8992351	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000202:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8992352	8992562	.	+	.	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000202:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8992352	8992374	.	+	2	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000202:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8992372	8992374	.	+	0	source_transcript=hg002_chrY_paternal_190.1;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.1,hg002_chrY_paternal_170.1;transcript_id=NA12877_ch_T0000202;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000202;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000202;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8989766	8992562	100	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_G0000090;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=NA12877_ch_T0000203;Name=TSPY10
NA12877_chrY	CAT	exon	8989766	8990297	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000203:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8989812	8990297	.	+	0	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000203:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8989812	8989814	.	+	0	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000203;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8990298	8990904	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000203:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8990905	8990982	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000203:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8990905	8990982	.	+	0	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000203:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8990983	8991110	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000203:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8991111	8991222	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000203:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8991111	8991222	.	+	0	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000203:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8991223	8991323	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000203:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8991324	8991469	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000203:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8991324	8991469	.	+	2	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000203:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8991470	8991564	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000203:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8991565	8991657	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000203:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8991565	8991627	.	+	0	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000203:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8991625	8991627	.	+	0	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000203;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8991658	8992351	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000203:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8992352	8992562	.	+	.	source_transcript=hg002_chrY_paternal_190.2;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.2,hg002_chrY_paternal_170.2;transcript_id=NA12877_ch_T0000203;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000203;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000203:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8989766	8992562	100	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_G0000090;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=NA12877_ch_T0000204;Name=TSPY10
NA12877_chrY	CAT	exon	8989766	8990297	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000204:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8989812	8990297	.	+	0	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000204:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	8989812	8989814	.	+	0	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000204;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8990298	8990904	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000204:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8990905	8990982	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000204:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8990905	8990982	.	+	0	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000204:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8990983	8991110	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000204:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8991111	8991222	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000204:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8991111	8991222	.	+	0	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000204:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8991223	8991330	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000204:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8991331	8991469	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000204:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8991331	8991469	.	+	2	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000204:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8991470	8991575	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000204:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8991576	8991657	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000204:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	8991576	8991627	.	+	1	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000204:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	8991625	8991627	.	+	0	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000204;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8991658	8992351	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000204:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8992352	8992562	.	+	.	source_transcript=hg002_chrY_paternal_190.3;source_transcript_name=hg002_chrY_paternal_190.4;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_190.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.3,hg002_chrY_paternal_170.3;transcript_id=NA12877_ch_T0000204;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000204;transcript_name=hg002_chrY_paternal_190.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000204:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	8989766	8992562	1000	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_170.4;transcript_id=NA12877_ch_T0000205;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_G0000090;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=NA12877_ch_T0000205;Name=TSPY10
NA12877_chrY	CAT	exon	8989766	8990297	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_170.4;transcript_id=NA12877_ch_T0000205;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000205;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000205:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8990298	8990904	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_170.4;transcript_id=NA12877_ch_T0000205;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000205;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000205:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8990905	8990982	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_170.4;transcript_id=NA12877_ch_T0000205;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000205;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000205:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8990983	8991110	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_170.4;transcript_id=NA12877_ch_T0000205;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000205;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000205:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8991111	8991222	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_170.4;transcript_id=NA12877_ch_T0000205;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000205;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000205:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8991223	8991330	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_170.4;transcript_id=NA12877_ch_T0000205;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000205;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000205:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8991331	8991469	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_170.4;transcript_id=NA12877_ch_T0000205;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000205;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000205:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8991470	8991564	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_170.4;transcript_id=NA12877_ch_T0000205;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000205;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000205:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8991565	8991657	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_170.4;transcript_id=NA12877_ch_T0000205;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000205;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000205:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	8991658	8992351	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_170.4;transcript_id=NA12877_ch_T0000205;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000205;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000205:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	8992352	8992562	.	+	.	source_transcript=hg002_chrY_paternal_190.4;source_transcript_name=hg002_chrY_paternal_190.1;source_gene=hg002_chrY_paternal_190;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_190;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_190.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_190.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_172.4,hg002_chrY_paternal_170.4;transcript_id=NA12877_ch_T0000205;gene_id=NA12877_ch_G0000090;Parent=NA12877_ch_T0000205;transcript_name=hg002_chrY_paternal_190.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000205:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9001838	9007531	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_191;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_171.1;gene_id=NA12877_ch_G0000091;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000091;Name=FAM197Y2
NA12877_chrY	CAT	transcript	9001838	9007531	1000	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_171.1;transcript_id=NA12877_ch_T0000206;gene_id=NA12877_ch_G0000091;Parent=NA12877_ch_G0000091;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000206;Name=FAM197Y2
NA12877_chrY	CAT	exon	9001838	9001897	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_171.1;transcript_id=NA12877_ch_T0000206;gene_id=NA12877_ch_G0000091;Parent=NA12877_ch_T0000206;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000206:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9001898	9005447	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_171.1;transcript_id=NA12877_ch_T0000206;gene_id=NA12877_ch_G0000091;Parent=NA12877_ch_T0000206;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000206:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9005448	9005606	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_171.1;transcript_id=NA12877_ch_T0000206;gene_id=NA12877_ch_G0000091;Parent=NA12877_ch_T0000206;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000206:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9005607	9007108	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_171.1;transcript_id=NA12877_ch_T0000206;gene_id=NA12877_ch_G0000091;Parent=NA12877_ch_T0000206;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000206:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9007109	9007254	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_171.1;transcript_id=NA12877_ch_T0000206;gene_id=NA12877_ch_G0000091;Parent=NA12877_ch_T0000206;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000206:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9007255	9007340	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_171.1;transcript_id=NA12877_ch_T0000206;gene_id=NA12877_ch_G0000091;Parent=NA12877_ch_T0000206;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000206:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9007341	9007531	.	-	.	source_transcript=hg002_chrY_paternal_191.1;source_transcript_name=hg002_chrY_paternal_191.1;source_gene=hg002_chrY_paternal_191;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_191;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_191.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_173.1,hg002_chrY_paternal_171.1;transcript_id=NA12877_ch_T0000206;gene_id=NA12877_ch_G0000091;Parent=NA12877_ch_T0000206;transcript_name=hg002_chrY_paternal_191.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000206:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9010055	9012851	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_170;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;gene_id=NA12877_ch_G0000092;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000092;Name=TSPY10
NA12877_chrY	CAT	transcript	9010055	9012851	100	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_G0000092;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=NA12877_ch_T0000207;Name=TSPY10
NA12877_chrY	CAT	exon	9010055	9010586	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000207:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9010101	9010586	.	+	0	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000207:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9010101	9010103	.	+	0	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000207;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9010587	9011193	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000207:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011194	9011271	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000207:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9011194	9011271	.	+	0	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000207:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011272	9011399	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000207:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011400	9011511	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000207:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9011400	9011511	.	+	0	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000207:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011512	9011612	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000207:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011613	9011758	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000207:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9011613	9011758	.	+	2	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000207:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011759	9011864	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000207:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011865	9011946	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000207:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9011865	9011946	.	+	0	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000207:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011947	9012640	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000207:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9012641	9012851	.	+	.	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000207:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9012641	9012663	.	+	2	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000207:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9012661	9012663	.	+	0	source_transcript=hg002_chrY_paternal_170.1;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.1,hg002_chrY_paternal_172.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000207;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000207;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000207;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9010055	9012851	100	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_G0000092;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=NA12877_ch_T0000208;Name=TSPY10
NA12877_chrY	CAT	exon	9010055	9010586	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000208:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9010101	9010586	.	+	0	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000208:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9010101	9010103	.	+	0	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000208;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9010587	9011193	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000208:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011194	9011271	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000208:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9011194	9011271	.	+	0	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000208:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011272	9011399	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000208:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011400	9011511	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000208:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9011400	9011511	.	+	0	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000208:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011512	9011612	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000208:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011613	9011758	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000208:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9011613	9011758	.	+	2	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000208:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011759	9011853	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000208:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011854	9011946	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000208:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9011854	9011916	.	+	0	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000208:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9011914	9011916	.	+	0	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000208;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011947	9012640	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000208:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9012641	9012851	.	+	.	source_transcript=hg002_chrY_paternal_170.2;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.2,hg002_chrY_paternal_172.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000208;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000208;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000208:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9010055	9012851	100	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_G0000092;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=NA12877_ch_T0000209;Name=TSPY10
NA12877_chrY	CAT	exon	9010055	9010586	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000209:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9010101	9010586	.	+	0	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000209:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9010101	9010103	.	+	0	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000209;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9010587	9011193	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000209:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011194	9011271	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000209:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9011194	9011271	.	+	0	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000209:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011272	9011399	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000209:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011400	9011511	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000209:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9011400	9011511	.	+	0	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000209:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011512	9011619	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000209:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011620	9011758	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000209:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9011620	9011758	.	+	2	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000209:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011759	9011864	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000209:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011865	9011946	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000209:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9011865	9011916	.	+	1	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000209:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9011914	9011916	.	+	0	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000209;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011947	9012640	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000209:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9012641	9012851	.	+	.	source_transcript=hg002_chrY_paternal_170.3;source_transcript_name=hg002_chrY_paternal_170.4;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_170.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.3,hg002_chrY_paternal_172.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000209;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000209;transcript_name=hg002_chrY_paternal_170.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000209:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9010055	9012851	1000	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000210;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_G0000092;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=NA12877_ch_T0000210;Name=TSPY10
NA12877_chrY	CAT	exon	9010055	9010586	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000210;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000210;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000210:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9010587	9011193	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000210;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000210;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000210:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011194	9011271	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000210;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000210;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000210:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011272	9011399	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000210;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000210;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000210:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011400	9011511	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000210;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000210;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000210:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011512	9011619	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000210;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000210;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000210:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011620	9011758	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000210;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000210;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000210:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011759	9011853	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000210;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000210;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000210:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9011854	9011946	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000210;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000210;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000210:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9011947	9012640	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000210;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000210;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000210:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9012641	9012851	.	+	.	source_transcript=hg002_chrY_paternal_170.4;source_transcript_name=hg002_chrY_paternal_170.1;source_gene=hg002_chrY_paternal_170;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_170;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_170.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_170.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_174.4,hg002_chrY_paternal_172.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000210;gene_id=NA12877_ch_G0000092;Parent=NA12877_ch_T0000210;transcript_name=hg002_chrY_paternal_170.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000210:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9022112	9027794	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_193;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_173.1;gene_id=NA12877_ch_G0000093;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000093;Name=FAM197Y2
NA12877_chrY	CAT	transcript	9022112	9027794	1000	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_173.1;transcript_id=NA12877_ch_T0000211;gene_id=NA12877_ch_G0000093;Parent=NA12877_ch_G0000093;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000211;Name=FAM197Y2
NA12877_chrY	CAT	exon	9022112	9022171	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_173.1;transcript_id=NA12877_ch_T0000211;gene_id=NA12877_ch_G0000093;Parent=NA12877_ch_T0000211;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000211:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9022172	9025720	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_173.1;transcript_id=NA12877_ch_T0000211;gene_id=NA12877_ch_G0000093;Parent=NA12877_ch_T0000211;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000211:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9025721	9025879	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_173.1;transcript_id=NA12877_ch_T0000211;gene_id=NA12877_ch_G0000093;Parent=NA12877_ch_T0000211;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000211:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9025880	9027371	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_173.1;transcript_id=NA12877_ch_T0000211;gene_id=NA12877_ch_G0000093;Parent=NA12877_ch_T0000211;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000211:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9027372	9027517	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_173.1;transcript_id=NA12877_ch_T0000211;gene_id=NA12877_ch_G0000093;Parent=NA12877_ch_T0000211;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000211:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9027518	9027603	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_173.1;transcript_id=NA12877_ch_T0000211;gene_id=NA12877_ch_G0000093;Parent=NA12877_ch_T0000211;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000211:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9027604	9027794	.	-	.	source_transcript=hg002_chrY_paternal_193.1;source_transcript_name=hg002_chrY_paternal_193.1;source_gene=hg002_chrY_paternal_193;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_193;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_193.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_175.1,hg002_chrY_paternal_173.1;transcript_id=NA12877_ch_T0000211;gene_id=NA12877_ch_G0000093;Parent=NA12877_ch_T0000211;transcript_name=hg002_chrY_paternal_193.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000211:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9030318	9033132	.	+	.	source_gene_common_name=TSPY4;source_gene=hg002_chrY_paternal_194;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;gene_id=NA12877_ch_G0000094;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff;ID=NA12877_ch_G0000094;Name=TSPY4
NA12877_chrY	CAT	transcript	9030318	9033132	100	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_G0000094;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=NA12877_ch_T0000212;Name=TSPY4
NA12877_chrY	CAT	exon	9030318	9030867	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000212:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9030364	9030867	.	+	0	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000212:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9030364	9030366	.	+	0	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000212;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9030868	9031474	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000212:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9031475	9031552	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000212:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9031475	9031552	.	+	0	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000212:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9031553	9031680	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000212:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9031681	9031792	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000212:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9031681	9031792	.	+	0	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000212:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9031793	9031893	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000212:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9031894	9032039	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000212:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9031894	9032039	.	+	2	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000212:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9032040	9032145	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000212:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9032146	9032227	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000212:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9032146	9032227	.	+	0	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000212:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9032228	9032921	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000212:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9032922	9033132	.	+	.	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000212:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9032922	9032944	.	+	2	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000212:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9032942	9032944	.	+	0	source_transcript=hg002_chrY_paternal_194.1;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.1,hg002_chrY_paternal_174.1;transcript_id=NA12877_ch_T0000212;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000212;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000212;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9030318	9033132	100	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_G0000094;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=NA12877_ch_T0000213;Name=TSPY4
NA12877_chrY	CAT	exon	9030318	9030867	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000213:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9030364	9030867	.	+	0	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000213:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9030364	9030366	.	+	0	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000213;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9030868	9031474	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000213:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9031475	9031552	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000213:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9031475	9031552	.	+	0	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000213:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9031553	9031680	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000213:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9031681	9031792	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000213:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9031681	9031792	.	+	0	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000213:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9031793	9031893	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000213:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9031894	9032039	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000213:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9031894	9032039	.	+	2	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000213:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9032040	9032134	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000213:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9032135	9032227	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000213:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9032135	9032197	.	+	0	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000213:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9032195	9032197	.	+	0	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000213;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9032228	9032921	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000213:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9032922	9033132	.	+	.	source_transcript=hg002_chrY_paternal_194.2;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.2,hg002_chrY_paternal_174.2;transcript_id=NA12877_ch_T0000213;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000213;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000213:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9030318	9033132	100	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_G0000094;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=NA12877_ch_T0000214;Name=TSPY4
NA12877_chrY	CAT	exon	9030318	9030867	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000214:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9030364	9030867	.	+	0	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000214:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9030364	9030366	.	+	0	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000214;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9030868	9031474	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000214:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9031475	9031552	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000214:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9031475	9031552	.	+	0	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000214:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9031553	9031680	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000214:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9031681	9031792	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000214:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9031681	9031792	.	+	0	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000214:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9031793	9031900	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000214:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9031901	9032039	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000214:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9031901	9032039	.	+	2	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000214:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9032040	9032145	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000214:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9032146	9032227	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000214:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9032146	9032197	.	+	1	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000214:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9032195	9032197	.	+	0	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000214;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9032228	9032921	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000214:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9032922	9033132	.	+	.	source_transcript=hg002_chrY_paternal_194.3;source_transcript_name=hg002_chrY_paternal_194.4;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_194.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.3,hg002_chrY_paternal_174.3;transcript_id=NA12877_ch_T0000214;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000214;transcript_name=hg002_chrY_paternal_194.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000214:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9030318	9033132	1000	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_174.4;transcript_id=NA12877_ch_T0000215;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_G0000094;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=NA12877_ch_T0000215;Name=TSPY4
NA12877_chrY	CAT	exon	9030318	9030867	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_174.4;transcript_id=NA12877_ch_T0000215;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000215;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000215:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9030868	9031474	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_174.4;transcript_id=NA12877_ch_T0000215;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000215;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000215:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9031475	9031552	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_174.4;transcript_id=NA12877_ch_T0000215;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000215;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000215:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9031553	9031680	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_174.4;transcript_id=NA12877_ch_T0000215;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000215;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000215:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9031681	9031792	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_174.4;transcript_id=NA12877_ch_T0000215;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000215;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000215:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9031793	9031900	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_174.4;transcript_id=NA12877_ch_T0000215;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000215;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000215:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9031901	9032039	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_174.4;transcript_id=NA12877_ch_T0000215;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000215;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000215:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9032040	9032134	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_174.4;transcript_id=NA12877_ch_T0000215;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000215;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000215:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9032135	9032227	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_174.4;transcript_id=NA12877_ch_T0000215;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000215;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000215:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9032228	9032921	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_174.4;transcript_id=NA12877_ch_T0000215;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000215;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000215:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9032922	9033132	.	+	.	source_transcript=hg002_chrY_paternal_194.4;source_transcript_name=hg002_chrY_paternal_194.1;source_gene=hg002_chrY_paternal_194;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_194;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_194.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_194.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_176.4,hg002_chrY_paternal_174.4;transcript_id=NA12877_ch_T0000215;gene_id=NA12877_ch_G0000094;Parent=NA12877_ch_T0000215;transcript_name=hg002_chrY_paternal_194.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000215:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9050622	9053436	.	+	.	source_gene_common_name=TSPY4;source_gene=hg002_chrY_paternal_174;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;gene_id=NA12877_ch_G0000095;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000095;Name=TSPY4
NA12877_chrY	CAT	transcript	9050622	9053436	100	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_G0000095;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=NA12877_ch_T0000216;Name=TSPY4
NA12877_chrY	CAT	exon	9050622	9051171	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000216:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9050668	9051171	.	+	0	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000216:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9050668	9050670	.	+	0	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000216;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9051172	9051778	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000216:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9051779	9051856	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000216:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9051779	9051856	.	+	0	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000216:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9051857	9051984	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000216:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9051985	9052096	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000216:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9051985	9052096	.	+	0	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000216:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9052097	9052197	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000216:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9052198	9052343	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000216:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9052198	9052343	.	+	2	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000216:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9052344	9052449	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000216:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9052450	9052531	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000216:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9052450	9052531	.	+	0	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000216:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9052532	9053225	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000216:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9053226	9053436	.	+	.	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000216:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9053226	9053248	.	+	2	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000216:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9053246	9053248	.	+	0	source_transcript=hg002_chrY_paternal_174.1;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.1,hg002_chrY_paternal_184.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000216;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000216;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000216;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9050622	9053436	100	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_G0000095;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=NA12877_ch_T0000217;Name=TSPY4
NA12877_chrY	CAT	exon	9050622	9051171	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000217:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9050668	9051171	.	+	0	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000217:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9050668	9050670	.	+	0	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000217;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9051172	9051778	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000217:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9051779	9051856	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000217:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9051779	9051856	.	+	0	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000217:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9051857	9051984	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000217:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9051985	9052096	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000217:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9051985	9052096	.	+	0	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000217:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9052097	9052197	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000217:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9052198	9052343	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000217:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9052198	9052343	.	+	2	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000217:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9052344	9052438	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000217:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9052439	9052531	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000217:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9052439	9052501	.	+	0	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000217:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9052499	9052501	.	+	0	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000217;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9052532	9053225	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000217:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9053226	9053436	.	+	.	source_transcript=hg002_chrY_paternal_174.2;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.2,hg002_chrY_paternal_184.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000217;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000217;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000217:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9050622	9053436	100	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_G0000095;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=NA12877_ch_T0000218;Name=TSPY4
NA12877_chrY	CAT	exon	9050622	9051171	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000218:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9050668	9051171	.	+	0	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000218:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9050668	9050670	.	+	0	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000218;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9051172	9051778	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000218:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9051779	9051856	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000218:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9051779	9051856	.	+	0	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000218:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9051857	9051984	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000218:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9051985	9052096	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000218:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9051985	9052096	.	+	0	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000218:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9052097	9052204	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000218:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9052205	9052343	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000218:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9052205	9052343	.	+	2	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000218:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9052344	9052449	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000218:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9052450	9052531	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000218:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9052450	9052501	.	+	1	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000218:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9052499	9052501	.	+	0	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000218;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9052532	9053225	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000218:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9053226	9053436	.	+	.	source_transcript=hg002_chrY_paternal_174.3;source_transcript_name=hg002_chrY_paternal_174.4;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_174.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.3,hg002_chrY_paternal_184.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000218;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000218;transcript_name=hg002_chrY_paternal_174.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000218:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9050622	9053436	1000	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000219;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_G0000095;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=NA12877_ch_T0000219;Name=TSPY4
NA12877_chrY	CAT	exon	9050622	9051171	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000219;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000219;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000219:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9051172	9051778	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000219;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000219;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000219:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9051779	9051856	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000219;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000219;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000219:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9051857	9051984	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000219;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000219;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000219:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9051985	9052096	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000219;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000219;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000219:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9052097	9052204	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000219;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000219;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000219:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9052205	9052343	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000219;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000219;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000219:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9052344	9052438	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000219;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000219;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000219:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9052439	9052531	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000219;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000219;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000219:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9052532	9053225	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000219;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000219;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000219:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9053226	9053436	.	+	.	source_transcript=hg002_chrY_paternal_174.4;source_transcript_name=hg002_chrY_paternal_174.1;source_gene=hg002_chrY_paternal_174;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_174;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_174.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_174.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_178.4,hg002_chrY_paternal_184.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000219;gene_id=NA12877_ch_G0000095;Parent=NA12877_ch_T0000219;transcript_name=hg002_chrY_paternal_174.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000219:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9062733	9068428	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_195;alternative_source_transcripts=hg002_chrY_paternal_185.1;gene_id=NA12877_ch_G0000096;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000096;Name=FAM197Y2
NA12877_chrY	CAT	transcript	9062733	9068428	1000	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1;transcript_id=NA12877_ch_T0000220;gene_id=NA12877_ch_G0000096;Parent=NA12877_ch_G0000096;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000220;Name=FAM197Y2
NA12877_chrY	CAT	exon	9062733	9062792	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1;transcript_id=NA12877_ch_T0000220;gene_id=NA12877_ch_G0000096;Parent=NA12877_ch_T0000220;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000220:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9062793	9066346	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1;transcript_id=NA12877_ch_T0000220;gene_id=NA12877_ch_G0000096;Parent=NA12877_ch_T0000220;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000220:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9066347	9066505	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1;transcript_id=NA12877_ch_T0000220;gene_id=NA12877_ch_G0000096;Parent=NA12877_ch_T0000220;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000220:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9066506	9068005	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1;transcript_id=NA12877_ch_T0000220;gene_id=NA12877_ch_G0000096;Parent=NA12877_ch_T0000220;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000220:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9068006	9068151	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1;transcript_id=NA12877_ch_T0000220;gene_id=NA12877_ch_G0000096;Parent=NA12877_ch_T0000220;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000220:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9068152	9068237	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1;transcript_id=NA12877_ch_T0000220;gene_id=NA12877_ch_G0000096;Parent=NA12877_ch_T0000220;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000220:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9068238	9068428	.	-	.	source_transcript=hg002_chrY_paternal_195.1;source_transcript_name=hg002_chrY_paternal_195.1;source_gene=hg002_chrY_paternal_195;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_195;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_195.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_195.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1;transcript_id=NA12877_ch_T0000220;gene_id=NA12877_ch_G0000096;Parent=NA12877_ch_T0000220;transcript_name=hg002_chrY_paternal_195.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000220:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9070952	9073748	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_196;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;gene_id=NA12877_ch_G0000097;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff;ID=NA12877_ch_G0000097;Name=TSPY1
NA12877_chrY	CAT	transcript	9070952	9073748	100	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_G0000097;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=NA12877_ch_T0000221;Name=TSPY1
NA12877_chrY	CAT	exon	9070952	9071483	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000221:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9070998	9071483	.	+	0	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000221:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9070998	9071000	.	+	0	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000221;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9071484	9072090	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000221:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072091	9072168	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000221:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072091	9072168	.	+	0	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000221:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072169	9072296	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000221:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072297	9072408	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000221:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072297	9072408	.	+	0	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000221:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072409	9072509	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000221:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072510	9072655	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000221:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072510	9072655	.	+	2	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000221:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072656	9072761	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000221:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072762	9072843	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000221:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072762	9072843	.	+	0	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000221:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072844	9073537	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000221:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9073538	9073748	.	+	.	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000221:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9073538	9073560	.	+	2	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000221:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9073558	9073560	.	+	0	source_transcript=hg002_chrY_paternal_196.3;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.1,hg002_chrY_paternal_186.1;transcript_id=NA12877_ch_T0000221;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000221;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000221;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9070952	9073748	100	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_G0000097;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=NA12877_ch_T0000222;Name=TSPY1
NA12877_chrY	CAT	exon	9070952	9071483	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000222:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9070998	9071483	.	+	0	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000222:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9070998	9071000	.	+	0	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000222;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9071484	9072090	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000222:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072091	9072168	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000222:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072091	9072168	.	+	0	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000222:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072169	9072296	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000222:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072297	9072408	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000222:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072297	9072408	.	+	0	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000222:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072409	9072509	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000222:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072510	9072655	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000222:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072510	9072655	.	+	2	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000222:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072656	9072750	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000222:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072751	9072843	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000222:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072751	9072813	.	+	0	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000222:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9072811	9072813	.	+	0	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000222;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072844	9073537	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000222:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9073538	9073748	.	+	.	source_transcript=hg002_chrY_paternal_196.1;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.2,hg002_chrY_paternal_186.2;transcript_id=NA12877_ch_T0000222;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000222;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000222:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9070952	9073748	100	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_G0000097;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=NA12877_ch_T0000223;Name=TSPY1
NA12877_chrY	CAT	exon	9070952	9071483	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000223:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9070998	9071483	.	+	0	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000223:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9070998	9071000	.	+	0	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000223;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9071484	9072090	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000223:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072091	9072168	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000223:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072091	9072168	.	+	0	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000223:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072169	9072296	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000223:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072297	9072408	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000223:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072297	9072408	.	+	0	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000223:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072409	9072516	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000223:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072517	9072655	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000223:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072517	9072655	.	+	2	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000223:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072656	9072761	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000223:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072762	9072843	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000223:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072762	9072813	.	+	1	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000223:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9072811	9072813	.	+	0	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000223;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072844	9073537	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000223:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9073538	9073748	.	+	.	source_transcript=hg002_chrY_paternal_196.4;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.3,hg002_chrY_paternal_186.3;transcript_id=NA12877_ch_T0000223;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000223;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000223:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9070952	9073748	1000	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_186.4;transcript_id=NA12877_ch_T0000224;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_G0000097;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=NA12877_ch_T0000224;Name=TSPY1
NA12877_chrY	CAT	exon	9070952	9071483	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_186.4;transcript_id=NA12877_ch_T0000224;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000224;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000224:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9071484	9072090	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_186.4;transcript_id=NA12877_ch_T0000224;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000224;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000224:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072091	9072168	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_186.4;transcript_id=NA12877_ch_T0000224;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000224;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000224:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072169	9072296	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_186.4;transcript_id=NA12877_ch_T0000224;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000224;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000224:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072297	9072408	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_186.4;transcript_id=NA12877_ch_T0000224;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000224;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000224:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072409	9072516	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_186.4;transcript_id=NA12877_ch_T0000224;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000224;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000224:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072517	9072655	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_186.4;transcript_id=NA12877_ch_T0000224;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000224;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000224:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072656	9072750	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_186.4;transcript_id=NA12877_ch_T0000224;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000224;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000224:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072751	9072843	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_186.4;transcript_id=NA12877_ch_T0000224;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000224;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000224:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072844	9073537	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_186.4;transcript_id=NA12877_ch_T0000224;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000224;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000224:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9073538	9073748	.	+	.	source_transcript=hg002_chrY_paternal_196.5;source_transcript_name=hg002_chrY_paternal_196.1;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_196.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_180.4,hg002_chrY_paternal_186.4;transcript_id=NA12877_ch_T0000224;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000224;transcript_name=hg002_chrY_paternal_196.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000224:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9070952	9073748	100	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_G0000097;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=NA12877_ch_T0000225;Name=TSPY1
NA12877_chrY	CAT	exon	9070952	9071084	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000225:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9070998	9071084	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000225:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9070998	9071000	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000225;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9071085	9071345	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000225:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9071346	9071483	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000225:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9071346	9071483	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000225:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9071484	9072090	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000225:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072091	9072168	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000225:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072091	9072168	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000225:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072169	9072296	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000225:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072297	9072408	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000225:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072297	9072408	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000225:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072409	9072509	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000225:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072510	9072655	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000225:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072510	9072655	.	+	2	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000225:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072656	9072761	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000225:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9072762	9072843	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000225:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9072762	9072843	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000225:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9072844	9073537	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000225:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9073538	9073748	.	+	.	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000225:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9073538	9073560	.	+	2	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000225:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9073558	9073560	.	+	0	source_transcript=hg002_chrY_paternal_196.2;source_transcript_name=hg002_chrY_paternal_196.5;source_gene=hg002_chrY_paternal_196;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_196;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_196.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_196.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000225;gene_id=NA12877_ch_G0000097;Parent=NA12877_ch_T0000225;transcript_name=hg002_chrY_paternal_196.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000225;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9083028	9088642	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_197;alternative_source_transcripts=hg002_chrY_paternal_187.1;gene_id=NA12877_ch_G0000098;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=NA12877_ch_G0000098;Name=FAM197Y3
NA12877_chrY	CAT	transcript	9083028	9088642	1000	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1;transcript_id=NA12877_ch_T0000226;gene_id=NA12877_ch_G0000098;Parent=NA12877_ch_G0000098;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=NA12877_ch_T0000226;Name=FAM197Y3
NA12877_chrY	CAT	exon	9083028	9083087	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1;transcript_id=NA12877_ch_T0000226;gene_id=NA12877_ch_G0000098;Parent=NA12877_ch_T0000226;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000226:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9083088	9086643	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1;transcript_id=NA12877_ch_T0000226;gene_id=NA12877_ch_G0000098;Parent=NA12877_ch_T0000226;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000226:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9086644	9086802	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1;transcript_id=NA12877_ch_T0000226;gene_id=NA12877_ch_G0000098;Parent=NA12877_ch_T0000226;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000226:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9086803	9088308	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1;transcript_id=NA12877_ch_T0000226;gene_id=NA12877_ch_G0000098;Parent=NA12877_ch_T0000226;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000226:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9088309	9088454	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1;transcript_id=NA12877_ch_T0000226;gene_id=NA12877_ch_G0000098;Parent=NA12877_ch_T0000226;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000226:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9088455	9088540	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1;transcript_id=NA12877_ch_T0000226;gene_id=NA12877_ch_G0000098;Parent=NA12877_ch_T0000226;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000226:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9088541	9088642	.	-	.	source_transcript=hg002_chrY_paternal_197.1;source_transcript_name=hg002_chrY_paternal_197.1;source_gene=hg002_chrY_paternal_197;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_197;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_197.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_197.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1;transcript_id=NA12877_ch_T0000226;gene_id=NA12877_ch_G0000098;Parent=NA12877_ch_T0000226;transcript_name=hg002_chrY_paternal_197.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000226:3;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9091255	9094051	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_182;alternative_source_transcripts=hg002_chrY_paternal_182.1;gene_id=NA12877_ch_G0000099;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000099;Name=TSPY10
NA12877_chrY	CAT	transcript	9091255	9094051	100	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_G0000099;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=NA12877_ch_T0000227;Name=TSPY10
NA12877_chrY	CAT	exon	9091255	9091786	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000227:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9091301	9091786	.	+	0	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000227:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9091301	9091303	.	+	0	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000227;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9091787	9092393	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000227:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9092394	9092471	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000227:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9092394	9092471	.	+	0	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000227:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9092472	9092599	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000227:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9092600	9092711	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000227:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9092600	9092711	.	+	0	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000227:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9092712	9092812	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000227:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9092813	9092958	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000227:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9092813	9092958	.	+	2	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000227:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9092959	9093064	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000227:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9093065	9093146	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000227:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9093065	9093146	.	+	0	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000227:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9093147	9093840	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000227:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9093841	9094051	.	+	.	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000227:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9093841	9093863	.	+	2	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000227:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9093861	9093863	.	+	0	source_transcript=hg002_chrY_paternal_182.1;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000227;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000227;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000227;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9091255	9094051	100	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_G0000099;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=NA12877_ch_T0000228;Name=TSPY10
NA12877_chrY	CAT	exon	9091255	9091786	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000228:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9091301	9091786	.	+	0	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000228:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9091301	9091303	.	+	0	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000228;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9091787	9092393	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000228:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9092394	9092471	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000228:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9092394	9092471	.	+	0	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000228:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9092472	9092599	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000228:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9092600	9092711	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000228:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9092600	9092711	.	+	0	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000228:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9092712	9092812	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000228:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9092813	9092958	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000228:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9092813	9092958	.	+	2	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000228:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9092959	9093053	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000228:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9093054	9093146	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000228:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9093054	9093116	.	+	0	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000228:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9093114	9093116	.	+	0	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000228;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9093147	9093840	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000228:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9093841	9094051	.	+	.	source_transcript=hg002_chrY_paternal_182.2;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000228;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000228;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000228:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9091255	9094051	100	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_G0000099;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=NA12877_ch_T0000229;Name=TSPY10
NA12877_chrY	CAT	exon	9091255	9091786	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000229:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9091301	9091786	.	+	0	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000229:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9091301	9091303	.	+	0	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000229;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9091787	9092393	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000229:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9092394	9092471	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000229:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9092394	9092471	.	+	0	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000229:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9092472	9092599	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000229:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9092600	9092711	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000229:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9092600	9092711	.	+	0	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000229:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9092712	9092819	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000229:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9092820	9092958	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000229:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9092820	9092958	.	+	2	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000229:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9092959	9093064	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000229:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9093065	9093146	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000229:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9093065	9093116	.	+	1	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000229:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9093114	9093116	.	+	0	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000229;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9093147	9093840	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000229:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9093841	9094051	.	+	.	source_transcript=hg002_chrY_paternal_182.3;source_transcript_name=hg002_chrY_paternal_182.4;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_182.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000229;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000229;transcript_name=hg002_chrY_paternal_182.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000229:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9091255	9094051	1000	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000230;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_G0000099;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=NA12877_ch_T0000230;Name=TSPY10
NA12877_chrY	CAT	exon	9091255	9091786	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000230;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000230;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000230:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9091787	9092393	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000230;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000230;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000230:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9092394	9092471	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000230;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000230;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000230:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9092472	9092599	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000230;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000230;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000230:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9092600	9092711	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000230;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000230;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000230:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9092712	9092819	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000230;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000230;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000230:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9092820	9092958	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000230;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000230;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000230:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9092959	9093053	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000230;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000230;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000230:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9093054	9093146	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000230;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000230;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000230:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9093147	9093840	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000230;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000230;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000230:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9093841	9094051	.	+	.	source_transcript=hg002_chrY_paternal_182.4;source_transcript_name=hg002_chrY_paternal_182.1;source_gene=hg002_chrY_paternal_182;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_182;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_182.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_182.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_182.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000230;gene_id=NA12877_ch_G0000099;Parent=NA12877_ch_T0000230;transcript_name=hg002_chrY_paternal_182.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000230:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9103322	9109019	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_175;alternative_source_transcripts=hg002_chrY_paternal_183.1;gene_id=NA12877_ch_G0000100;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000100;Name=FAM197Y2
NA12877_chrY	CAT	transcript	9103322	9109019	1000	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1;transcript_id=NA12877_ch_T0000231;gene_id=NA12877_ch_G0000100;Parent=NA12877_ch_G0000100;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000231;Name=FAM197Y2
NA12877_chrY	CAT	exon	9103322	9103381	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1;transcript_id=NA12877_ch_T0000231;gene_id=NA12877_ch_G0000100;Parent=NA12877_ch_T0000231;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000231:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9103382	9106931	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1;transcript_id=NA12877_ch_T0000231;gene_id=NA12877_ch_G0000100;Parent=NA12877_ch_T0000231;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000231:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9106932	9107090	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1;transcript_id=NA12877_ch_T0000231;gene_id=NA12877_ch_G0000100;Parent=NA12877_ch_T0000231;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000231:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9107091	9108596	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1;transcript_id=NA12877_ch_T0000231;gene_id=NA12877_ch_G0000100;Parent=NA12877_ch_T0000231;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000231:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9108597	9108742	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1;transcript_id=NA12877_ch_T0000231;gene_id=NA12877_ch_G0000100;Parent=NA12877_ch_T0000231;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000231:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9108743	9108828	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1;transcript_id=NA12877_ch_T0000231;gene_id=NA12877_ch_G0000100;Parent=NA12877_ch_T0000231;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000231:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9108829	9109019	.	-	.	source_transcript=hg002_chrY_paternal_175.1;source_transcript_name=hg002_chrY_paternal_175.1;source_gene=hg002_chrY_paternal_175;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_175;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_175.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_175.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_183.1;transcript_id=NA12877_ch_T0000231;gene_id=NA12877_ch_G0000100;Parent=NA12877_ch_T0000231;transcript_name=hg002_chrY_paternal_175.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000231:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9111543	9114357	.	+	.	source_gene_common_name=TSPY4;source_gene=hg002_chrY_paternal_184;alternative_source_transcripts=hg002_chrY_paternal_206.3;gene_id=NA12877_ch_G0000101;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=augTM,transMap;ID=NA12877_ch_G0000101;Name=TSPY4
NA12877_chrY	CAT	transcript	9111543	9114357	9990	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_G0000101;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=NA12877_ch_T0000232;Name=TSPY4
NA12877_chrY	CAT	exon	9111543	9112092	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000232:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9111589	9112092	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000232:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9111589	9111591	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000232;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9112093	9112699	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000232:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9112700	9112777	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000232:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9112700	9112777	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000232:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9112778	9112905	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000232:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9112906	9113017	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000232:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9112906	9113017	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000232:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9113018	9113125	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000232:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9113126	9113264	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000232:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9113126	9113264	.	+	2	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000232:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9113265	9113370	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000232:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9113371	9113452	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000232:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9113371	9113422	.	+	1	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000232:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9113420	9113422	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000232;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9113453	9114146	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000232:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9114147	9114357	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=299.887;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_206.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000232;gene_id=NA12877_ch_G0000101;Parent=NA12877_ch_T0000232;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000232:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9123642	9129337	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_227;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_215.1;gene_id=NA12877_ch_G0000102;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000102;Name=FAM197Y2
NA12877_chrY	CAT	transcript	9123642	9129337	1000	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_215.1;transcript_id=NA12877_ch_T0000233;gene_id=NA12877_ch_G0000102;Parent=NA12877_ch_G0000102;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000233;Name=FAM197Y2
NA12877_chrY	CAT	exon	9123642	9123701	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_215.1;transcript_id=NA12877_ch_T0000233;gene_id=NA12877_ch_G0000102;Parent=NA12877_ch_T0000233;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000233:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9123702	9127255	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_215.1;transcript_id=NA12877_ch_T0000233;gene_id=NA12877_ch_G0000102;Parent=NA12877_ch_T0000233;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000233:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9127256	9127414	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_215.1;transcript_id=NA12877_ch_T0000233;gene_id=NA12877_ch_G0000102;Parent=NA12877_ch_T0000233;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000233:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9127415	9128914	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_215.1;transcript_id=NA12877_ch_T0000233;gene_id=NA12877_ch_G0000102;Parent=NA12877_ch_T0000233;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000233:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9128915	9129060	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_215.1;transcript_id=NA12877_ch_T0000233;gene_id=NA12877_ch_G0000102;Parent=NA12877_ch_T0000233;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000233:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9129061	9129146	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_215.1;transcript_id=NA12877_ch_T0000233;gene_id=NA12877_ch_G0000102;Parent=NA12877_ch_T0000233;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000233:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9129147	9129337	.	-	.	source_transcript=hg002_chrY_paternal_227.1;source_transcript_name=hg002_chrY_paternal_227.1;source_gene=hg002_chrY_paternal_227;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_227;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_227.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_227.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_185.1,hg002_chrY_paternal_215.1;transcript_id=NA12877_ch_T0000233;gene_id=NA12877_ch_G0000102;Parent=NA12877_ch_T0000233;transcript_name=hg002_chrY_paternal_227.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000233:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9131861	9134675	.	+	.	source_gene_common_name=TSPY3;source_gene=hg002_chrY_paternal_186;alternative_source_transcripts=hg002_chrY_paternal_216.4;gene_id=NA12877_ch_G0000103;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=augTM,transMap;ID=NA12877_ch_G0000103;Name=TSPY3
NA12877_chrY	CAT	transcript	9131861	9134675	1000	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=299.828;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000234;gene_id=NA12877_ch_G0000103;Parent=NA12877_ch_G0000103;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=NA12877_ch_T0000234;Name=TSPY3
NA12877_chrY	CAT	exon	9131861	9132410	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000234;gene_id=NA12877_ch_G0000103;Parent=NA12877_ch_T0000234;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:NA12877_ch_T0000234:0;Name=TSPY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9132411	9133017	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000234;gene_id=NA12877_ch_G0000103;Parent=NA12877_ch_T0000234;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:NA12877_ch_T0000234:0;Name=TSPY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9133018	9133095	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000234;gene_id=NA12877_ch_G0000103;Parent=NA12877_ch_T0000234;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:NA12877_ch_T0000234:1;Name=TSPY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9133096	9133223	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000234;gene_id=NA12877_ch_G0000103;Parent=NA12877_ch_T0000234;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:NA12877_ch_T0000234:1;Name=TSPY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9133224	9133335	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000234;gene_id=NA12877_ch_G0000103;Parent=NA12877_ch_T0000234;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:NA12877_ch_T0000234:2;Name=TSPY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9133336	9133443	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000234;gene_id=NA12877_ch_G0000103;Parent=NA12877_ch_T0000234;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:NA12877_ch_T0000234:2;Name=TSPY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9133444	9133582	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000234;gene_id=NA12877_ch_G0000103;Parent=NA12877_ch_T0000234;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:NA12877_ch_T0000234:3;Name=TSPY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9133583	9133677	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000234;gene_id=NA12877_ch_G0000103;Parent=NA12877_ch_T0000234;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:NA12877_ch_T0000234:3;Name=TSPY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9133678	9133770	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000234;gene_id=NA12877_ch_G0000103;Parent=NA12877_ch_T0000234;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:NA12877_ch_T0000234:4;Name=TSPY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9133771	9134464	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000234;gene_id=NA12877_ch_G0000103;Parent=NA12877_ch_T0000234;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=intron:NA12877_ch_T0000234:4;Name=TSPY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9134465	9134675	.	+	.	source_transcript=hg002_chrY_paternal_186.4;source_transcript_name=hg002_chrY_paternal_186.4;source_gene=hg002_chrY_paternal_186;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_186;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_186.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_186.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=hg002_chrY_paternal_216.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000234;gene_id=NA12877_ch_G0000103;Parent=NA12877_ch_T0000234;transcript_name=hg002_chrY_paternal_186.4;gene_name=TSPY3;ID=exon:NA12877_ch_T0000234:5;Name=TSPY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9143947	9149556	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_225;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_217.1;gene_id=NA12877_ch_G0000104;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=NA12877_ch_G0000104;Name=FAM197Y3
NA12877_chrY	CAT	transcript	9143947	9149556	1000	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_217.1;transcript_id=NA12877_ch_T0000235;gene_id=NA12877_ch_G0000104;Parent=NA12877_ch_G0000104;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=NA12877_ch_T0000235;Name=FAM197Y3
NA12877_chrY	CAT	exon	9143947	9144006	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_217.1;transcript_id=NA12877_ch_T0000235;gene_id=NA12877_ch_G0000104;Parent=NA12877_ch_T0000235;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000235:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9144007	9147557	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_217.1;transcript_id=NA12877_ch_T0000235;gene_id=NA12877_ch_G0000104;Parent=NA12877_ch_T0000235;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000235:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9147558	9147716	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_217.1;transcript_id=NA12877_ch_T0000235;gene_id=NA12877_ch_G0000104;Parent=NA12877_ch_T0000235;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000235:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9147717	9149222	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_217.1;transcript_id=NA12877_ch_T0000235;gene_id=NA12877_ch_G0000104;Parent=NA12877_ch_T0000235;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000235:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9149223	9149368	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_217.1;transcript_id=NA12877_ch_T0000235;gene_id=NA12877_ch_G0000104;Parent=NA12877_ch_T0000235;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000235:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9149369	9149454	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_217.1;transcript_id=NA12877_ch_T0000235;gene_id=NA12877_ch_G0000104;Parent=NA12877_ch_T0000235;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000235:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9149455	9149556	.	-	.	source_transcript=hg002_chrY_paternal_225.1;source_transcript_name=hg002_chrY_paternal_225.1;source_gene=hg002_chrY_paternal_225;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_225;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_225.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_225.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_187.1,hg002_chrY_paternal_217.1;transcript_id=NA12877_ch_T0000235;gene_id=NA12877_ch_G0000104;Parent=NA12877_ch_T0000235;transcript_name=hg002_chrY_paternal_225.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000235:3;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9152167	9154963	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_226;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;gene_id=NA12877_ch_G0000105;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff;ID=NA12877_ch_G0000105;Name=TSPY10
NA12877_chrY	CAT	transcript	9152167	9154963	100	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_G0000105;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=NA12877_ch_T0000236;Name=TSPY10
NA12877_chrY	CAT	exon	9152167	9152698	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000236:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9152213	9152698	.	+	0	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000236:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9152213	9152215	.	+	0	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000236;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9152699	9153305	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000236:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153306	9153383	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000236:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9153306	9153383	.	+	0	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000236:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9153384	9153511	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000236:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153512	9153623	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000236:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9153512	9153623	.	+	0	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000236:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9153624	9153724	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000236:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153725	9153870	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000236:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9153725	9153870	.	+	2	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000236:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9153871	9153976	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000236:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153977	9154058	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000236:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9153977	9154058	.	+	0	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000236:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9154059	9154752	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000236:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9154753	9154963	.	+	.	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000236:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9154753	9154775	.	+	2	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000236:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9154773	9154775	.	+	0	source_transcript=hg002_chrY_paternal_226.1;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.1,hg002_chrY_paternal_218.1;transcript_id=NA12877_ch_T0000236;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000236;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000236;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9152167	9154963	100	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_G0000105;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=NA12877_ch_T0000237;Name=TSPY10
NA12877_chrY	CAT	exon	9152167	9152698	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000237:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9152213	9152698	.	+	0	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000237:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9152213	9152215	.	+	0	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000237;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9152699	9153305	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000237:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153306	9153383	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000237:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9153306	9153383	.	+	0	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000237:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9153384	9153511	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000237:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153512	9153623	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000237:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9153512	9153623	.	+	0	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000237:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9153624	9153724	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000237:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153725	9153870	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000237:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9153725	9153870	.	+	2	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000237:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9153871	9153965	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000237:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153966	9154058	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000237:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9153966	9154028	.	+	0	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000237:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9154026	9154028	.	+	0	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000237;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9154059	9154752	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000237:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9154753	9154963	.	+	.	source_transcript=hg002_chrY_paternal_226.2;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.2,hg002_chrY_paternal_218.2;transcript_id=NA12877_ch_T0000237;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000237;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000237:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9152167	9154963	100	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_G0000105;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=NA12877_ch_T0000238;Name=TSPY10
NA12877_chrY	CAT	exon	9152167	9152698	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000238:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9152213	9152698	.	+	0	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000238:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9152213	9152215	.	+	0	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000238;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9152699	9153305	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000238:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153306	9153383	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000238:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9153306	9153383	.	+	0	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000238:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9153384	9153511	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000238:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153512	9153623	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000238:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9153512	9153623	.	+	0	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000238:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9153624	9153731	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000238:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153732	9153870	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000238:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9153732	9153870	.	+	2	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000238:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9153871	9153976	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000238:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153977	9154058	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000238:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9153977	9154028	.	+	1	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000238:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9154026	9154028	.	+	0	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000238;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9154059	9154752	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000238:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9154753	9154963	.	+	.	source_transcript=hg002_chrY_paternal_226.3;source_transcript_name=hg002_chrY_paternal_226.4;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_226.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.3,hg002_chrY_paternal_218.3;transcript_id=NA12877_ch_T0000238;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000238;transcript_name=hg002_chrY_paternal_226.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000238:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9152167	9154963	1000	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_218.4;transcript_id=NA12877_ch_T0000239;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_G0000105;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=NA12877_ch_T0000239;Name=TSPY10
NA12877_chrY	CAT	exon	9152167	9152698	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_218.4;transcript_id=NA12877_ch_T0000239;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000239;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000239:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9152699	9153305	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_218.4;transcript_id=NA12877_ch_T0000239;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000239;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000239:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153306	9153383	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_218.4;transcript_id=NA12877_ch_T0000239;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000239;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000239:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9153384	9153511	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_218.4;transcript_id=NA12877_ch_T0000239;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000239;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000239:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153512	9153623	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_218.4;transcript_id=NA12877_ch_T0000239;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000239;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000239:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9153624	9153731	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_218.4;transcript_id=NA12877_ch_T0000239;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000239;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000239:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153732	9153870	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_218.4;transcript_id=NA12877_ch_T0000239;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000239;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000239:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9153871	9153965	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_218.4;transcript_id=NA12877_ch_T0000239;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000239;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000239:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9153966	9154058	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_218.4;transcript_id=NA12877_ch_T0000239;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000239;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000239:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9154059	9154752	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_218.4;transcript_id=NA12877_ch_T0000239;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000239;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=intron:NA12877_ch_T0000239:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9154753	9154963	.	+	.	source_transcript=hg002_chrY_paternal_226.4;source_transcript_name=hg002_chrY_paternal_226.1;source_gene=hg002_chrY_paternal_226;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_226;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_226.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_226.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_190.4,hg002_chrY_paternal_218.4;transcript_id=NA12877_ch_T0000239;gene_id=NA12877_ch_G0000105;Parent=NA12877_ch_T0000239;transcript_name=hg002_chrY_paternal_226.1;gene_name=TSPY10;ID=exon:NA12877_ch_T0000239:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9164232	9169922	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_209;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_219.1;gene_id=NA12877_ch_G0000106;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000106;Name=FAM197Y2
NA12877_chrY	CAT	transcript	9164232	9169922	1000	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_219.1;transcript_id=NA12877_ch_T0000240;gene_id=NA12877_ch_G0000106;Parent=NA12877_ch_G0000106;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000240;Name=FAM197Y2
NA12877_chrY	CAT	exon	9164232	9164291	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_219.1;transcript_id=NA12877_ch_T0000240;gene_id=NA12877_ch_G0000106;Parent=NA12877_ch_T0000240;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000240:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9164292	9167842	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_219.1;transcript_id=NA12877_ch_T0000240;gene_id=NA12877_ch_G0000106;Parent=NA12877_ch_T0000240;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000240:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9167843	9168001	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_219.1;transcript_id=NA12877_ch_T0000240;gene_id=NA12877_ch_G0000106;Parent=NA12877_ch_T0000240;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000240:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9168002	9169499	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_219.1;transcript_id=NA12877_ch_T0000240;gene_id=NA12877_ch_G0000106;Parent=NA12877_ch_T0000240;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000240:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9169500	9169645	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_219.1;transcript_id=NA12877_ch_T0000240;gene_id=NA12877_ch_G0000106;Parent=NA12877_ch_T0000240;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000240:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9169646	9169731	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_219.1;transcript_id=NA12877_ch_T0000240;gene_id=NA12877_ch_G0000106;Parent=NA12877_ch_T0000240;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000240:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9169732	9169922	.	-	.	source_transcript=hg002_chrY_paternal_209.1;source_transcript_name=hg002_chrY_paternal_209.1;source_gene=hg002_chrY_paternal_209;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_209;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_209.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_209.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_191.1,hg002_chrY_paternal_219.1;transcript_id=NA12877_ch_T0000240;gene_id=NA12877_ch_G0000106;Parent=NA12877_ch_T0000240;transcript_name=hg002_chrY_paternal_209.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000240:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9184545	9190229	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_219;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_221.1;gene_id=NA12877_ch_G0000107;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000107;Name=FAM197Y2
NA12877_chrY	CAT	transcript	9184545	9190229	1000	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_221.1;transcript_id=NA12877_ch_T0000241;gene_id=NA12877_ch_G0000107;Parent=NA12877_ch_G0000107;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000241;Name=FAM197Y2
NA12877_chrY	CAT	exon	9184545	9184604	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_221.1;transcript_id=NA12877_ch_T0000241;gene_id=NA12877_ch_G0000107;Parent=NA12877_ch_T0000241;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000241:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9184605	9188151	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_221.1;transcript_id=NA12877_ch_T0000241;gene_id=NA12877_ch_G0000107;Parent=NA12877_ch_T0000241;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000241:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9188152	9188310	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_221.1;transcript_id=NA12877_ch_T0000241;gene_id=NA12877_ch_G0000107;Parent=NA12877_ch_T0000241;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000241:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9188311	9189806	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_221.1;transcript_id=NA12877_ch_T0000241;gene_id=NA12877_ch_G0000107;Parent=NA12877_ch_T0000241;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000241:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9189807	9189952	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_221.1;transcript_id=NA12877_ch_T0000241;gene_id=NA12877_ch_G0000107;Parent=NA12877_ch_T0000241;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000241:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9189953	9190038	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_221.1;transcript_id=NA12877_ch_T0000241;gene_id=NA12877_ch_G0000107;Parent=NA12877_ch_T0000241;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000241:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9190039	9190229	.	-	.	source_transcript=hg002_chrY_paternal_219.1;source_transcript_name=hg002_chrY_paternal_219.1;source_gene=hg002_chrY_paternal_219;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_219;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_219.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_219.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_193.1,hg002_chrY_paternal_221.1;transcript_id=NA12877_ch_T0000241;gene_id=NA12877_ch_G0000107;Parent=NA12877_ch_T0000241;transcript_name=hg002_chrY_paternal_219.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000241:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9192754	9195550	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_198;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;gene_id=NA12877_ch_G0000108;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000108;Name=TSPY1
NA12877_chrY	CAT	transcript	9192754	9195550	100	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_G0000108;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=NA12877_ch_T0000242;Name=TSPY1
NA12877_chrY	CAT	exon	9192754	9193285	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000242:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9192800	9193285	.	+	0	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000242:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9192800	9192802	.	+	0	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000242;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9193286	9193892	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000242:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9193893	9193970	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000242:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9193893	9193970	.	+	0	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000242:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9193971	9194098	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000242:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194099	9194210	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000242:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9194099	9194210	.	+	0	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000242:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194211	9194311	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000242:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194312	9194457	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000242:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9194312	9194457	.	+	2	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000242:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194458	9194563	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000242:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194564	9194645	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000242:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9194564	9194645	.	+	0	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000242:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194646	9195339	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000242:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9195340	9195550	.	+	.	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000242:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9195340	9195362	.	+	2	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000242:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9195360	9195362	.	+	0	source_transcript=hg002_chrY_paternal_198.3;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.1,hg002_chrY_paternal_222.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000242;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000242;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000242;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9192754	9195550	100	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_G0000108;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=NA12877_ch_T0000243;Name=TSPY1
NA12877_chrY	CAT	exon	9192754	9193285	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000243:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9192800	9193285	.	+	0	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000243:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9192800	9192802	.	+	0	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000243;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9193286	9193892	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000243:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9193893	9193970	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000243:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9193893	9193970	.	+	0	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000243:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9193971	9194098	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000243:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194099	9194210	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000243:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9194099	9194210	.	+	0	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000243:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194211	9194311	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000243:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194312	9194457	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000243:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9194312	9194457	.	+	2	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000243:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194458	9194552	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000243:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194553	9194645	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000243:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9194553	9194615	.	+	0	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000243:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9194613	9194615	.	+	0	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000243;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194646	9195339	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000243:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9195340	9195550	.	+	.	source_transcript=hg002_chrY_paternal_198.1;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.2,hg002_chrY_paternal_222.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000243;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000243;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000243:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9192754	9195550	100	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_G0000108;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=NA12877_ch_T0000244;Name=TSPY1
NA12877_chrY	CAT	exon	9192754	9193285	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000244:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9192800	9193285	.	+	0	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000244:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9192800	9192802	.	+	0	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000244;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9193286	9193892	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000244:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9193893	9193970	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000244:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9193893	9193970	.	+	0	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000244:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9193971	9194098	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000244:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194099	9194210	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000244:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9194099	9194210	.	+	0	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000244:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194211	9194318	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000244:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194319	9194457	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000244:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9194319	9194457	.	+	2	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000244:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194458	9194563	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000244:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194564	9194645	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000244:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9194564	9194615	.	+	1	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000244:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9194613	9194615	.	+	0	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000244;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194646	9195339	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000244:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9195340	9195550	.	+	.	source_transcript=hg002_chrY_paternal_198.4;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_194.3,hg002_chrY_paternal_222.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000244;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000244;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000244:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9192754	9195550	100	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_G0000108;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=NA12877_ch_T0000245;Name=TSPY1
NA12877_chrY	CAT	exon	9192754	9192886	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000245:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9192800	9192886	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000245:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9192800	9192802	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000245;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9192887	9193147	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000245:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9193148	9193285	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000245:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9193148	9193285	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000245:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9193286	9193892	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000245:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9193893	9193970	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000245:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9193893	9193970	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000245:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9193971	9194098	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000245:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194099	9194210	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000245:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9194099	9194210	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000245:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194211	9194311	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000245:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194312	9194457	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000245:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9194312	9194457	.	+	2	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000245:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194458	9194563	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000245:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194564	9194645	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000245:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9194564	9194645	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000245:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194646	9195339	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000245:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9195340	9195550	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000245:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9195340	9195362	.	+	2	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000245:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9195360	9195362	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000245;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000245;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000245;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9192754	9195550	1000	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000246;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_G0000108;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=NA12877_ch_T0000246;Name=TSPY1
NA12877_chrY	CAT	exon	9192754	9193285	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000246;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000246;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000246:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9193286	9193892	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000246;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000246;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000246:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9193893	9193970	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000246;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000246;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000246:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9193971	9194098	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000246;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000246;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000246:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194099	9194210	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000246;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000246;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000246:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194211	9194318	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000246;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000246;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000246:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194319	9194457	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000246;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000246;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000246:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194458	9194552	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000246;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000246;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000246:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9194553	9194645	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000246;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000246;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000246:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9194646	9195339	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000246;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000246;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000246:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9195340	9195550	.	+	.	source_transcript=hg002_chrY_paternal_198.5;source_transcript_name=hg002_chrY_paternal_198.1;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_198.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_198.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_222.4,hg002_chrY_paternal_194.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000246;gene_id=NA12877_ch_G0000108;Parent=NA12877_ch_T0000246;transcript_name=hg002_chrY_paternal_198.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000246:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9204863	9210551	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_233;alternative_source_transcripts=hg002_chrY_paternal_195.1;gene_id=NA12877_ch_G0000109;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000109;Name=FAM197Y2
NA12877_chrY	CAT	transcript	9204863	9210551	1000	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1;transcript_id=NA12877_ch_T0000247;gene_id=NA12877_ch_G0000109;Parent=NA12877_ch_G0000109;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000247;Name=FAM197Y2
NA12877_chrY	CAT	exon	9204863	9204922	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1;transcript_id=NA12877_ch_T0000247;gene_id=NA12877_ch_G0000109;Parent=NA12877_ch_T0000247;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000247:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9204923	9208471	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1;transcript_id=NA12877_ch_T0000247;gene_id=NA12877_ch_G0000109;Parent=NA12877_ch_T0000247;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000247:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9208472	9208630	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1;transcript_id=NA12877_ch_T0000247;gene_id=NA12877_ch_G0000109;Parent=NA12877_ch_T0000247;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000247:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9208631	9210128	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1;transcript_id=NA12877_ch_T0000247;gene_id=NA12877_ch_G0000109;Parent=NA12877_ch_T0000247;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000247:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9210129	9210274	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1;transcript_id=NA12877_ch_T0000247;gene_id=NA12877_ch_G0000109;Parent=NA12877_ch_T0000247;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000247:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9210275	9210360	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1;transcript_id=NA12877_ch_T0000247;gene_id=NA12877_ch_G0000109;Parent=NA12877_ch_T0000247;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000247:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9210361	9210551	.	-	.	source_transcript=hg002_chrY_paternal_233.1;source_transcript_name=hg002_chrY_paternal_233.1;source_gene=hg002_chrY_paternal_233;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_233;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_233.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_233.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_195.1;transcript_id=NA12877_ch_T0000247;gene_id=NA12877_ch_G0000109;Parent=NA12877_ch_T0000247;transcript_name=hg002_chrY_paternal_233.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000247:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9213075	9215871	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_214;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;gene_id=NA12877_ch_G0000110;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff;ID=NA12877_ch_G0000110;Name=TSPY1
NA12877_chrY	CAT	transcript	9213075	9215871	10000	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_G0000110;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=NA12877_ch_T0000248;Name=TSPY1
NA12877_chrY	CAT	exon	9213075	9213606	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000248:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9213121	9213606	.	+	0	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000248:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9213121	9213123	.	+	0	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000248;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9213607	9214213	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000248:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214214	9214291	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000248:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214214	9214291	.	+	0	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000248:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214292	9214419	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000248:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214420	9214531	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000248:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214420	9214531	.	+	0	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000248:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214532	9214632	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000248:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214633	9214778	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000248:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214633	9214778	.	+	2	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000248:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214779	9214873	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000248:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214874	9214966	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000248:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214874	9214936	.	+	0	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000248:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9214934	9214936	.	+	0	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000248;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214967	9215660	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000248:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9215661	9215871	.	+	.	source_transcript=hg002_chrY_paternal_214.1;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.1,hg002_chrY_paternal_224.2;transcript_id=NA12877_ch_T0000248;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000248;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000248:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9213075	9215871	10000	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_G0000110;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=NA12877_ch_T0000249;Name=TSPY1
NA12877_chrY	CAT	exon	9213075	9213207	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000249:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9213121	9213207	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000249:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9213121	9213123	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000249;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9213208	9213468	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000249:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9213469	9213606	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000249:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9213469	9213606	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000249:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9213607	9214213	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000249:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214214	9214291	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000249:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214214	9214291	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000249:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214292	9214419	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000249:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214420	9214531	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000249:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214420	9214531	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000249:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214532	9214632	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000249:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214633	9214778	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000249:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214633	9214778	.	+	2	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000249:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214779	9214884	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000249:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214885	9214966	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000249:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214885	9214966	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000249:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214967	9215660	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000249:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9215661	9215871	.	+	.	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000249:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9215661	9215683	.	+	2	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000249:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9215681	9215683	.	+	0	source_transcript=hg002_chrY_paternal_214.2;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.2;transcript_id=NA12877_ch_T0000249;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000249;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000249;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9213075	9215871	10000	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_G0000110;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=NA12877_ch_T0000250;Name=TSPY1
NA12877_chrY	CAT	exon	9213075	9213606	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000250:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9213121	9213606	.	+	0	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000250:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9213121	9213123	.	+	0	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000250;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9213607	9214213	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000250:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214214	9214291	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000250:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214214	9214291	.	+	0	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000250:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214292	9214419	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000250:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214420	9214531	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000250:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214420	9214531	.	+	0	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000250:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214532	9214632	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000250:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214633	9214778	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000250:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214633	9214778	.	+	2	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000250:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214779	9214884	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000250:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214885	9214966	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000250:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214885	9214966	.	+	0	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000250:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214967	9215660	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000250:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9215661	9215871	.	+	.	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000250:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9215661	9215683	.	+	2	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000250:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9215681	9215683	.	+	0	source_transcript=hg002_chrY_paternal_214.3;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.3,hg002_chrY_paternal_224.1;transcript_id=NA12877_ch_T0000250;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000250;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000250;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9213075	9215871	10000	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_G0000110;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=NA12877_ch_T0000251;Name=TSPY1
NA12877_chrY	CAT	exon	9213075	9213606	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000251:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9213121	9213606	.	+	0	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000251:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9213121	9213123	.	+	0	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000251;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9213607	9214213	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000251:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214214	9214291	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000251:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214214	9214291	.	+	0	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000251:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214292	9214419	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000251:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214420	9214531	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000251:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214420	9214531	.	+	0	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000251:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214532	9214639	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000251:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214640	9214778	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000251:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214640	9214778	.	+	2	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000251:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214779	9214884	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000251:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214885	9214966	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000251:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9214885	9214936	.	+	1	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000251:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9214934	9214936	.	+	0	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000251;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214967	9215660	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000251:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9215661	9215871	.	+	.	source_transcript=hg002_chrY_paternal_214.4;source_transcript_name=hg002_chrY_paternal_214.5;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_214.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.4;transcript_id=NA12877_ch_T0000251;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000251;transcript_name=hg002_chrY_paternal_214.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000251:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9213075	9215871	1000	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5;transcript_id=NA12877_ch_T0000252;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_G0000110;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=NA12877_ch_T0000252;Name=TSPY1
NA12877_chrY	CAT	exon	9213075	9213606	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5;transcript_id=NA12877_ch_T0000252;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000252;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000252:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9213607	9214213	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5;transcript_id=NA12877_ch_T0000252;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000252;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000252:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214214	9214291	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5;transcript_id=NA12877_ch_T0000252;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000252;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000252:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214292	9214419	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5;transcript_id=NA12877_ch_T0000252;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000252;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000252:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214420	9214531	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5;transcript_id=NA12877_ch_T0000252;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000252;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000252:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214532	9214639	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5;transcript_id=NA12877_ch_T0000252;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000252;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000252:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214640	9214778	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5;transcript_id=NA12877_ch_T0000252;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000252;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000252:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214779	9214873	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5;transcript_id=NA12877_ch_T0000252;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000252;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000252:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9214874	9214966	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5;transcript_id=NA12877_ch_T0000252;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000252;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000252:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9214967	9215660	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5;transcript_id=NA12877_ch_T0000252;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000252;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000252:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9215661	9215871	.	+	.	source_transcript=hg002_chrY_paternal_214.5;source_transcript_name=hg002_chrY_paternal_214.1;source_gene=hg002_chrY_paternal_214;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_214;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_214.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_214.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_196.5;transcript_id=NA12877_ch_T0000252;gene_id=NA12877_ch_G0000110;Parent=NA12877_ch_T0000252;transcript_name=hg002_chrY_paternal_214.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000252:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9225139	9230749	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_201;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_225.1;gene_id=NA12877_ch_G0000111;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=NA12877_ch_G0000111;Name=FAM197Y3
NA12877_chrY	CAT	transcript	9225139	9230749	1000	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_225.1;transcript_id=NA12877_ch_T0000253;gene_id=NA12877_ch_G0000111;Parent=NA12877_ch_G0000111;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=NA12877_ch_T0000253;Name=FAM197Y3
NA12877_chrY	CAT	exon	9225139	9225198	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_225.1;transcript_id=NA12877_ch_T0000253;gene_id=NA12877_ch_G0000111;Parent=NA12877_ch_T0000253;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000253:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9225199	9228748	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_225.1;transcript_id=NA12877_ch_T0000253;gene_id=NA12877_ch_G0000111;Parent=NA12877_ch_T0000253;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000253:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9228749	9228907	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_225.1;transcript_id=NA12877_ch_T0000253;gene_id=NA12877_ch_G0000111;Parent=NA12877_ch_T0000253;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000253:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9228908	9230415	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_225.1;transcript_id=NA12877_ch_T0000253;gene_id=NA12877_ch_G0000111;Parent=NA12877_ch_T0000253;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000253:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9230416	9230561	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_225.1;transcript_id=NA12877_ch_T0000253;gene_id=NA12877_ch_G0000111;Parent=NA12877_ch_T0000253;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000253:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9230562	9230647	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_225.1;transcript_id=NA12877_ch_T0000253;gene_id=NA12877_ch_G0000111;Parent=NA12877_ch_T0000253;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000253:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9230648	9230749	.	-	.	source_transcript=hg002_chrY_paternal_201.1;source_transcript_name=hg002_chrY_paternal_201.1;source_gene=hg002_chrY_paternal_201;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_201;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_201.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_201.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_197.1,hg002_chrY_paternal_225.1;transcript_id=NA12877_ch_T0000253;gene_id=NA12877_ch_G0000111;Parent=NA12877_ch_T0000253;transcript_name=hg002_chrY_paternal_201.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000253:3;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9233362	9236158	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_198;gene_id=NA12877_ch_G0000112;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=augTM,transMap;ID=NA12877_ch_G0000112;Name=TSPY1
NA12877_chrY	CAT	transcript	9233362	9236158	10000	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_G0000112;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=NA12877_ch_T0000254;Name=TSPY1
NA12877_chrY	CAT	exon	9233362	9233494	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000254:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9233408	9233494	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000254:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9233408	9233410	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000254;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9233495	9233755	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000254:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9233756	9233893	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000254:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9233756	9233893	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000254:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9233894	9234500	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000254:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9234501	9234578	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000254:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9234501	9234578	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000254:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9234579	9234706	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000254:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9234707	9234818	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000254:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9234707	9234818	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000254:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9234819	9234919	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000254:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9234920	9235065	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000254:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9234920	9235065	.	+	2	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000254:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9235066	9235171	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000254:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9235172	9235253	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000254:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9235172	9235253	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000254:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9235254	9235947	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000254:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9235948	9236158	.	+	.	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000254:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9235948	9235970	.	+	2	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000254:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9235968	9235970	.	+	0	source_transcript=hg002_chrY_paternal_198.2;source_transcript_name=hg002_chrY_paternal_198.5;source_gene=hg002_chrY_paternal_198;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_198;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_198.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_198.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000254;gene_id=NA12877_ch_G0000112;Parent=NA12877_ch_T0000254;transcript_name=hg002_chrY_paternal_198.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000254;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9253644	9256440	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_230;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;gene_id=NA12877_ch_G0000113;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff;ID=NA12877_ch_G0000113;Name=TSPY1
NA12877_chrY	CAT	transcript	9253644	9256440	100	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_G0000113;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=NA12877_ch_T0000255;Name=TSPY1
NA12877_chrY	CAT	exon	9253644	9254175	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000255:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9253690	9254175	.	+	0	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000255:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9253690	9253692	.	+	0	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000255;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9254176	9254782	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000255:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9254783	9254860	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000255:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9254783	9254860	.	+	0	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000255:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9254861	9254988	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000255:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9254989	9255100	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000255:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9254989	9255100	.	+	0	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000255:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255101	9255201	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000255:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9255202	9255347	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000255:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9255202	9255347	.	+	2	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000255:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255348	9255453	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000255:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9255454	9255535	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000255:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9255454	9255535	.	+	0	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000255:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255536	9256229	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000255:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9256230	9256440	.	+	.	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000255:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9256230	9256252	.	+	2	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000255:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9256250	9256252	.	+	0	source_transcript=hg002_chrY_paternal_230.3;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.1,hg002_chrY_paternal_228.1;transcript_id=NA12877_ch_T0000255;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000255;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000255;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9253644	9256440	100	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_G0000113;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=NA12877_ch_T0000256;Name=TSPY1
NA12877_chrY	CAT	exon	9253644	9254175	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000256:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9253690	9254175	.	+	0	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000256:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9253690	9253692	.	+	0	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000256;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9254176	9254782	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000256:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9254783	9254860	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000256:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9254783	9254860	.	+	0	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000256:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9254861	9254988	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000256:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9254989	9255100	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000256:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9254989	9255100	.	+	0	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000256:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255101	9255201	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000256:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9255202	9255347	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000256:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9255202	9255347	.	+	2	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000256:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255348	9255442	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000256:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9255443	9255535	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000256:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9255443	9255505	.	+	0	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000256:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9255503	9255505	.	+	0	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000256;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255536	9256229	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000256:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9256230	9256440	.	+	.	source_transcript=hg002_chrY_paternal_230.1;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.2,hg002_chrY_paternal_228.2;transcript_id=NA12877_ch_T0000256;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000256;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000256:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9253644	9256440	100	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_G0000113;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=NA12877_ch_T0000257;Name=TSPY1
NA12877_chrY	CAT	exon	9253644	9254175	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000257:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9253690	9254175	.	+	0	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000257:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9253690	9253692	.	+	0	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000257;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9254176	9254782	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000257:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9254783	9254860	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000257:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9254783	9254860	.	+	0	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000257:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9254861	9254988	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000257:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9254989	9255100	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000257:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9254989	9255100	.	+	0	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000257:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255101	9255208	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000257:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9255209	9255347	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000257:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9255209	9255347	.	+	2	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000257:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255348	9255453	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000257:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9255454	9255535	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000257:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9255454	9255505	.	+	1	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000257:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9255503	9255505	.	+	0	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000257;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255536	9256229	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000257:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9256230	9256440	.	+	.	source_transcript=hg002_chrY_paternal_230.4;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.3,hg002_chrY_paternal_228.3;transcript_id=NA12877_ch_T0000257;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000257;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000257:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9253644	9256440	1000	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_228.4;transcript_id=NA12877_ch_T0000258;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_G0000113;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=NA12877_ch_T0000258;Name=TSPY1
NA12877_chrY	CAT	exon	9253644	9254175	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_228.4;transcript_id=NA12877_ch_T0000258;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000258;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000258:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9254176	9254782	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_228.4;transcript_id=NA12877_ch_T0000258;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000258;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000258:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9254783	9254860	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_228.4;transcript_id=NA12877_ch_T0000258;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000258;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000258:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9254861	9254988	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_228.4;transcript_id=NA12877_ch_T0000258;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000258;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000258:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9254989	9255100	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_228.4;transcript_id=NA12877_ch_T0000258;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000258;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000258:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255101	9255208	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_228.4;transcript_id=NA12877_ch_T0000258;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000258;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000258:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9255209	9255347	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_228.4;transcript_id=NA12877_ch_T0000258;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000258;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000258:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255348	9255442	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_228.4;transcript_id=NA12877_ch_T0000258;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000258;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000258:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9255443	9255535	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_228.4;transcript_id=NA12877_ch_T0000258;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000258;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000258:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255536	9256229	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_228.4;transcript_id=NA12877_ch_T0000258;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000258;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000258:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9256230	9256440	.	+	.	source_transcript=hg002_chrY_paternal_230.5;source_transcript_name=hg002_chrY_paternal_230.1;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_230.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_204.4,hg002_chrY_paternal_228.4;transcript_id=NA12877_ch_T0000258;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000258;transcript_name=hg002_chrY_paternal_230.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000258:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9253644	9256440	100	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_G0000113;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=NA12877_ch_T0000259;Name=TSPY1
NA12877_chrY	CAT	exon	9253644	9253776	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000259:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9253690	9253776	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000259:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9253690	9253692	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000259;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9253777	9254037	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000259:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9254038	9254175	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000259:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9254038	9254175	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000259:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9254176	9254782	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000259:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9254783	9254860	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000259:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9254783	9254860	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000259:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9254861	9254988	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000259:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9254989	9255100	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000259:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9254989	9255100	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000259:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255101	9255201	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000259:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9255202	9255347	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000259:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9255202	9255347	.	+	2	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000259:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255348	9255453	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000259:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9255454	9255535	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000259:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9255454	9255535	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000259:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9255536	9256229	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000259:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9256230	9256440	.	+	.	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000259:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9256230	9256252	.	+	2	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000259:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9256250	9256252	.	+	0	source_transcript=hg002_chrY_paternal_230.2;source_transcript_name=hg002_chrY_paternal_230.5;source_gene=hg002_chrY_paternal_230;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_230;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_230.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_230.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=NA12877_ch_T0000259;gene_id=NA12877_ch_G0000113;Parent=NA12877_ch_T0000259;transcript_name=hg002_chrY_paternal_230.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000259;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9265710	9271410	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_231;alternative_source_transcripts=hg002_chrY_paternal_229.1;gene_id=NA12877_ch_G0000114;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000114;Name=FAM197Y2
NA12877_chrY	CAT	transcript	9265710	9271410	1000	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1;transcript_id=NA12877_ch_T0000260;gene_id=NA12877_ch_G0000114;Parent=NA12877_ch_G0000114;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000260;Name=FAM197Y2
NA12877_chrY	CAT	exon	9265710	9265769	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1;transcript_id=NA12877_ch_T0000260;gene_id=NA12877_ch_G0000114;Parent=NA12877_ch_T0000260;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000260:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9265770	9269324	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1;transcript_id=NA12877_ch_T0000260;gene_id=NA12877_ch_G0000114;Parent=NA12877_ch_T0000260;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000260:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9269325	9269483	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1;transcript_id=NA12877_ch_T0000260;gene_id=NA12877_ch_G0000114;Parent=NA12877_ch_T0000260;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000260:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9269484	9270987	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1;transcript_id=NA12877_ch_T0000260;gene_id=NA12877_ch_G0000114;Parent=NA12877_ch_T0000260;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000260:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9270988	9271133	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1;transcript_id=NA12877_ch_T0000260;gene_id=NA12877_ch_G0000114;Parent=NA12877_ch_T0000260;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000260:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9271134	9271219	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1;transcript_id=NA12877_ch_T0000260;gene_id=NA12877_ch_G0000114;Parent=NA12877_ch_T0000260;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000260:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9271220	9271410	.	-	.	source_transcript=hg002_chrY_paternal_231.1;source_transcript_name=hg002_chrY_paternal_231.1;source_gene=hg002_chrY_paternal_231;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_231;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_231.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_231.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_229.1;transcript_id=NA12877_ch_T0000260;gene_id=NA12877_ch_G0000114;Parent=NA12877_ch_T0000260;transcript_name=hg002_chrY_paternal_231.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000260:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9286038	9291726	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_235;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_231.1;gene_id=NA12877_ch_G0000115;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000115;Name=FAM197Y2
NA12877_chrY	CAT	transcript	9286038	9291726	1000	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_231.1;transcript_id=NA12877_ch_T0000261;gene_id=NA12877_ch_G0000115;Parent=NA12877_ch_G0000115;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000261;Name=FAM197Y2
NA12877_chrY	CAT	exon	9286038	9286097	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_231.1;transcript_id=NA12877_ch_T0000261;gene_id=NA12877_ch_G0000115;Parent=NA12877_ch_T0000261;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000261:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9286098	9289648	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_231.1;transcript_id=NA12877_ch_T0000261;gene_id=NA12877_ch_G0000115;Parent=NA12877_ch_T0000261;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000261:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9289649	9289807	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_231.1;transcript_id=NA12877_ch_T0000261;gene_id=NA12877_ch_G0000115;Parent=NA12877_ch_T0000261;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000261:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9289808	9291303	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_231.1;transcript_id=NA12877_ch_T0000261;gene_id=NA12877_ch_G0000115;Parent=NA12877_ch_T0000261;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000261:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9291304	9291449	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_231.1;transcript_id=NA12877_ch_T0000261;gene_id=NA12877_ch_G0000115;Parent=NA12877_ch_T0000261;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000261:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9291450	9291535	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_231.1;transcript_id=NA12877_ch_T0000261;gene_id=NA12877_ch_G0000115;Parent=NA12877_ch_T0000261;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000261:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9291536	9291726	.	-	.	source_transcript=hg002_chrY_paternal_235.1;source_transcript_name=hg002_chrY_paternal_235.1;source_gene=hg002_chrY_paternal_235;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_235;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_235.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_235.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_219.1,hg002_chrY_paternal_231.1;transcript_id=NA12877_ch_T0000261;gene_id=NA12877_ch_G0000115;Parent=NA12877_ch_T0000261;transcript_name=hg002_chrY_paternal_235.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000261:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9294251	9297047	.	+	.	source_gene_common_name=TSPY1;source_gene=hg002_chrY_paternal_220;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;gene_id=NA12877_ch_G0000116;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000116;Name=TSPY1
NA12877_chrY	CAT	transcript	9294251	9297047	100	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_G0000116;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=NA12877_ch_T0000262;Name=TSPY1
NA12877_chrY	CAT	exon	9294251	9294782	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000262:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9294297	9294782	.	+	0	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000262:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9294297	9294299	.	+	0	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000262;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9294783	9295389	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000262:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295390	9295467	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000262:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9295390	9295467	.	+	0	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000262:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295468	9295595	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000262:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295596	9295707	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000262:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9295596	9295707	.	+	0	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000262:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295708	9295808	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000262:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295809	9295954	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000262:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9295809	9295954	.	+	2	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000262:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295955	9296049	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000262:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9296050	9296142	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000262:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9296050	9296112	.	+	0	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000262:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9296110	9296112	.	+	0	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000262;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9296143	9296836	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000262:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9296837	9297047	.	+	.	source_transcript=hg002_chrY_paternal_220.1;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.1,hg002_chrY_paternal_232.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000262;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000262;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000262:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9294251	9297047	100	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_G0000116;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=NA12877_ch_T0000263;Name=TSPY1
NA12877_chrY	CAT	exon	9294251	9294383	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000263:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9294297	9294383	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000263:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9294297	9294299	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000263;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9294384	9294644	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000263:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9294645	9294782	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000263:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9294645	9294782	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000263:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9294783	9295389	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000263:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295390	9295467	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000263:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9295390	9295467	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000263:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295468	9295595	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000263:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295596	9295707	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000263:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9295596	9295707	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000263:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295708	9295808	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000263:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295809	9295954	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000263:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9295809	9295954	.	+	2	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000263:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295955	9296060	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000263:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9296061	9296142	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000263:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9296061	9296142	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000263:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9296143	9296836	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000263:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9296837	9297047	.	+	.	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000263:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9296837	9296859	.	+	2	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000263:6;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9296857	9296859	.	+	0	source_transcript=hg002_chrY_paternal_220.2;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.2,hg002_chrY_paternal_232.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000263;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000263;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000263;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9294251	9297047	100	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_G0000116;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=NA12877_ch_T0000264;Name=TSPY1
NA12877_chrY	CAT	exon	9294251	9294782	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000264:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9294297	9294782	.	+	0	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000264:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9294297	9294299	.	+	0	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000264;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9294783	9295389	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000264:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295390	9295467	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000264:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9295390	9295467	.	+	0	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000264:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295468	9295595	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000264:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295596	9295707	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000264:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9295596	9295707	.	+	0	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000264:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295708	9295808	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000264:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295809	9295954	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000264:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9295809	9295954	.	+	2	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000264:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295955	9296060	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000264:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9296061	9296142	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000264:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9296061	9296142	.	+	0	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000264:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9296143	9296836	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000264:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9296837	9297047	.	+	.	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000264:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9296837	9296859	.	+	2	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000264:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9296857	9296859	.	+	0	source_transcript=hg002_chrY_paternal_220.3;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.3,hg002_chrY_paternal_232.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000264;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000264;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000264;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9294251	9297047	100	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_G0000116;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=NA12877_ch_T0000265;Name=TSPY1
NA12877_chrY	CAT	exon	9294251	9294782	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000265:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9294297	9294782	.	+	0	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000265:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9294297	9294299	.	+	0	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=start_codon:NA12877_ch_T0000265;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9294783	9295389	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000265:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295390	9295467	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000265:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9295390	9295467	.	+	0	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000265:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295468	9295595	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000265:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295596	9295707	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000265:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9295596	9295707	.	+	0	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000265:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295708	9295815	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000265:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295816	9295954	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000265:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9295816	9295954	.	+	2	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000265:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295955	9296060	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000265:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9296061	9296142	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000265:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9296061	9296112	.	+	1	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=CDS:NA12877_ch_T0000265:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9296110	9296112	.	+	0	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=stop_codon:NA12877_ch_T0000265;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9296143	9296836	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=intron:NA12877_ch_T0000265:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9296837	9297047	.	+	.	source_transcript=hg002_chrY_paternal_220.4;source_transcript_name=hg002_chrY_paternal_220.5;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_220.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_220.4,hg002_chrY_paternal_232.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000265;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000265;transcript_name=hg002_chrY_paternal_220.5;gene_name=TSPY1;ID=exon:NA12877_ch_T0000265:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9294251	9297047	1000	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000266;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_G0000116;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=NA12877_ch_T0000266;Name=TSPY1
NA12877_chrY	CAT	exon	9294251	9294782	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000266;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000266;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000266:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9294783	9295389	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000266;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000266;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000266:0;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295390	9295467	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000266;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000266;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000266:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295468	9295595	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000266;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000266;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000266:1;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295596	9295707	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000266;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000266;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000266:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295708	9295815	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000266;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000266;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000266:2;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9295816	9295954	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000266;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000266;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000266:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9295955	9296049	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000266;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000266;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000266:3;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9296050	9296142	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000266;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000266;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000266:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9296143	9296836	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000266;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000266;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=intron:NA12877_ch_T0000266:4;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9296837	9297047	.	+	.	source_transcript=hg002_chrY_paternal_220.5;source_transcript_name=hg002_chrY_paternal_220.1;source_gene=hg002_chrY_paternal_220;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_220;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_220.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_220.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;alternative_source_transcripts=hg002_chrY_paternal_232.5,hg002_chrY_paternal_220.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000266;gene_id=NA12877_ch_G0000116;Parent=NA12877_ch_T0000266;transcript_name=hg002_chrY_paternal_220.1;gene_name=TSPY1;ID=exon:NA12877_ch_T0000266:5;Name=TSPY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9306350	9312036	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_221;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;gene_id=NA12877_ch_G0000117;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000117;Name=FAM197Y2
NA12877_chrY	CAT	transcript	9306350	9312036	1000	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=NA12877_ch_T0000267;gene_id=NA12877_ch_G0000117;Parent=NA12877_ch_G0000117;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000267;Name=FAM197Y2
NA12877_chrY	CAT	exon	9306350	9306409	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=NA12877_ch_T0000267;gene_id=NA12877_ch_G0000117;Parent=NA12877_ch_T0000267;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000267:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9306410	9309958	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=NA12877_ch_T0000267;gene_id=NA12877_ch_G0000117;Parent=NA12877_ch_T0000267;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000267:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9309959	9310117	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=NA12877_ch_T0000267;gene_id=NA12877_ch_G0000117;Parent=NA12877_ch_T0000267;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000267:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9310118	9311613	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=NA12877_ch_T0000267;gene_id=NA12877_ch_G0000117;Parent=NA12877_ch_T0000267;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000267:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9311614	9311759	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=NA12877_ch_T0000267;gene_id=NA12877_ch_G0000117;Parent=NA12877_ch_T0000267;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000267:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9311760	9311845	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=NA12877_ch_T0000267;gene_id=NA12877_ch_G0000117;Parent=NA12877_ch_T0000267;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000267:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9311846	9312036	.	-	.	source_transcript=hg002_chrY_paternal_221.1;source_transcript_name=hg002_chrY_paternal_221.1;source_gene=hg002_chrY_paternal_221;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_221;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_221.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_221.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_233.1,hg002_chrY_paternal_233.1;transcript_id=NA12877_ch_T0000267;gene_id=NA12877_ch_G0000117;Parent=NA12877_ch_T0000267;transcript_name=hg002_chrY_paternal_221.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000267:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9314560	9317374	.	+	.	source_gene_common_name=TSPY4;source_gene=hg002_chrY_paternal_184;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;gene_id=NA12877_ch_G0000118;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff;ID=NA12877_ch_G0000118;Name=TSPY4
NA12877_chrY	CAT	transcript	9314560	9317374	100	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_G0000118;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=NA12877_ch_T0000268;Name=TSPY4
NA12877_chrY	CAT	exon	9314560	9315109	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000268:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9314606	9315109	.	+	0	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000268:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9314606	9314608	.	+	0	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000268;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9315110	9315716	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000268:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9315717	9315794	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000268:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9315717	9315794	.	+	0	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000268:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9315795	9315922	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000268:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9315923	9316034	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000268:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9315923	9316034	.	+	0	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000268:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9316035	9316135	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000268:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9316136	9316281	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000268:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9316136	9316281	.	+	2	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000268:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9316282	9316387	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000268:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9316388	9316469	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000268:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9316388	9316469	.	+	0	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000268:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9316470	9317163	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000268:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9317164	9317374	.	+	.	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000268:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9317164	9317186	.	+	2	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000268:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9317184	9317186	.	+	0	source_transcript=hg002_chrY_paternal_184.1;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.1,hg002_chrY_paternal_234.1;transcript_id=NA12877_ch_T0000268;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000268;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000268;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9314560	9317374	100	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_G0000118;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=NA12877_ch_T0000269;Name=TSPY4
NA12877_chrY	CAT	exon	9314560	9315109	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000269:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9314606	9315109	.	+	0	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000269:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9314606	9314608	.	+	0	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000269;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9315110	9315716	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000269:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9315717	9315794	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000269:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9315717	9315794	.	+	0	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000269:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9315795	9315922	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000269:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9315923	9316034	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000269:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9315923	9316034	.	+	0	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000269:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9316035	9316135	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000269:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9316136	9316281	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000269:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9316136	9316281	.	+	2	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000269:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9316282	9316376	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000269:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9316377	9316469	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000269:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9316377	9316439	.	+	0	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000269:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9316437	9316439	.	+	0	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000269;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9316470	9317163	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000269:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9317164	9317374	.	+	.	source_transcript=hg002_chrY_paternal_184.2;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.2,hg002_chrY_paternal_234.2;transcript_id=NA12877_ch_T0000269;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000269;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000269:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9314560	9317374	100	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_G0000118;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=NA12877_ch_T0000270;Name=TSPY4
NA12877_chrY	CAT	exon	9314560	9315109	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000270:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9314606	9315109	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000270:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9314606	9314608	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=start_codon:NA12877_ch_T0000270;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9315110	9315716	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000270:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9315717	9315794	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000270:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9315717	9315794	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000270:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9315795	9315922	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000270:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9315923	9316034	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000270:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9315923	9316034	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000270:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9316035	9316142	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000270:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9316143	9316281	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000270:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9316143	9316281	.	+	2	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000270:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9316282	9316387	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000270:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9316388	9316469	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000270:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9316388	9316439	.	+	1	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=CDS:NA12877_ch_T0000270:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9316437	9316439	.	+	0	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=stop_codon:NA12877_ch_T0000270;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9316470	9317163	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=intron:NA12877_ch_T0000270:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9317164	9317374	.	+	.	source_transcript=hg002_chrY_paternal_184.3;source_transcript_name=hg002_chrY_paternal_184.4;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_184.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.3,hg002_chrY_paternal_234.3;transcript_id=NA12877_ch_T0000270;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000270;transcript_name=hg002_chrY_paternal_184.4;gene_name=TSPY4;ID=exon:NA12877_ch_T0000270:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9314560	9317374	1000	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;transcript_id=NA12877_ch_T0000271;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_G0000118;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=NA12877_ch_T0000271;Name=TSPY4
NA12877_chrY	CAT	exon	9314560	9315109	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;transcript_id=NA12877_ch_T0000271;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000271;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000271:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9315110	9315716	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;transcript_id=NA12877_ch_T0000271;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000271;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000271:0;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9315717	9315794	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;transcript_id=NA12877_ch_T0000271;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000271;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000271:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9315795	9315922	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;transcript_id=NA12877_ch_T0000271;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000271;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000271:1;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9315923	9316034	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;transcript_id=NA12877_ch_T0000271;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000271;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000271:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9316035	9316142	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;transcript_id=NA12877_ch_T0000271;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000271;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000271:2;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9316143	9316281	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;transcript_id=NA12877_ch_T0000271;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000271;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000271:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9316282	9316376	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;transcript_id=NA12877_ch_T0000271;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000271;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000271:3;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9316377	9316469	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;transcript_id=NA12877_ch_T0000271;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000271;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000271:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9316470	9317163	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;transcript_id=NA12877_ch_T0000271;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000271;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=intron:NA12877_ch_T0000271:4;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9317164	9317374	.	+	.	source_transcript=hg002_chrY_paternal_184.4;source_transcript_name=hg002_chrY_paternal_184.1;source_gene=hg002_chrY_paternal_184;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_184;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_184.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_184.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=hg002_chrY_paternal_234.4,hg002_chrY_paternal_234.4;transcript_id=NA12877_ch_T0000271;gene_id=NA12877_ch_G0000118;Parent=NA12877_ch_T0000271;transcript_name=hg002_chrY_paternal_184.1;gene_name=TSPY4;ID=exon:NA12877_ch_T0000271:5;Name=TSPY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9326656	9332333	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_207;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;gene_id=NA12877_ch_G0000119;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000119;Name=FAM197Y2
NA12877_chrY	CAT	transcript	9326656	9332333	1000	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=NA12877_ch_T0000272;gene_id=NA12877_ch_G0000119;Parent=NA12877_ch_G0000119;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000272;Name=FAM197Y2
NA12877_chrY	CAT	exon	9326656	9326715	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=NA12877_ch_T0000272;gene_id=NA12877_ch_G0000119;Parent=NA12877_ch_T0000272;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000272:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9326716	9330264	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=NA12877_ch_T0000272;gene_id=NA12877_ch_G0000119;Parent=NA12877_ch_T0000272;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000272:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9330265	9330423	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=NA12877_ch_T0000272;gene_id=NA12877_ch_G0000119;Parent=NA12877_ch_T0000272;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000272:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9330424	9331910	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=NA12877_ch_T0000272;gene_id=NA12877_ch_G0000119;Parent=NA12877_ch_T0000272;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000272:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9331911	9332056	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=NA12877_ch_T0000272;gene_id=NA12877_ch_G0000119;Parent=NA12877_ch_T0000272;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000272:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9332057	9332142	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=NA12877_ch_T0000272;gene_id=NA12877_ch_G0000119;Parent=NA12877_ch_T0000272;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000272:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9332143	9332333	.	-	.	source_transcript=hg002_chrY_paternal_207.1;source_transcript_name=hg002_chrY_paternal_207.1;source_gene=hg002_chrY_paternal_207;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_207;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_207.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_207.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;alternative_source_transcripts=hg002_chrY_paternal_235.1,hg002_chrY_paternal_235.1;transcript_id=NA12877_ch_T0000272;gene_id=NA12877_ch_G0000119;Parent=NA12877_ch_T0000272;transcript_name=hg002_chrY_paternal_207.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000272:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9334857	9337671	.	+	.	source_gene_common_name=TSPY10P;source_gene=hg002_chrY_paternal_236;alternative_source_transcripts=hg002_chrY_paternal_236.1;gene_id=NA12877_ch_G0000120;gene_biotype=pseudogene;gene_name=TSPY10P;gene_sources=augTM,transMap;ID=NA12877_ch_G0000120;Name=TSPY10P
NA12877_chrY	CAT	transcript	9334857	9337671	1000	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_G0000120;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=NA12877_ch_T0000273;Name=TSPY10P
NA12877_chrY	CAT	exon	9334857	9335406	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000273:0;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9334903	9335406	.	+	0	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:NA12877_ch_T0000273:0;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9334903	9334905	.	+	0	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=start_codon:NA12877_ch_T0000273;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9335407	9336013	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000273:0;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336014	9336091	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000273:1;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9336014	9336091	.	+	0	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:NA12877_ch_T0000273:1;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336092	9336219	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000273:1;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336220	9336331	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000273:2;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9336220	9336331	.	+	0	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:NA12877_ch_T0000273:2;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336332	9336432	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000273:2;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336433	9336578	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000273:3;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9336433	9336467	.	+	2	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:NA12877_ch_T0000273:3;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336579	9336684	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000273:3;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336685	9336766	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000273:4;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336767	9337460	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000273:4;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9337461	9337671	.	+	.	source_transcript=hg002_chrY_paternal_236.1;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000273;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000273;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000273:5;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9334857	9337671	1000	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_G0000120;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=NA12877_ch_T0000274;Name=TSPY10P
NA12877_chrY	CAT	exon	9334857	9335406	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000274:0;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9334903	9335406	.	+	0	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:NA12877_ch_T0000274:0;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9334903	9334905	.	+	0	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=start_codon:NA12877_ch_T0000274;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9335407	9336013	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000274:0;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336014	9336091	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000274:1;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9336014	9336091	.	+	0	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:NA12877_ch_T0000274:1;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336092	9336219	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000274:1;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336220	9336331	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000274:2;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9336220	9336331	.	+	0	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:NA12877_ch_T0000274:2;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336332	9336432	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000274:2;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336433	9336578	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000274:3;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9336433	9336467	.	+	2	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:NA12877_ch_T0000274:3;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336579	9336673	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000274:3;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336674	9336766	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000274:4;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336767	9337460	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000274:4;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9337461	9337671	.	+	.	source_transcript=hg002_chrY_paternal_236.2;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.2;transcript_score=299.573;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000274;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000274;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000274:5;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9334857	9337671	1000	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_G0000120;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=NA12877_ch_T0000275;Name=TSPY10P
NA12877_chrY	CAT	exon	9334857	9335406	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000275:0;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9334903	9335406	.	+	0	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:NA12877_ch_T0000275:0;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9334903	9334905	.	+	0	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=start_codon:NA12877_ch_T0000275;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9335407	9336013	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000275:0;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336014	9336091	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000275:1;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9336014	9336091	.	+	0	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:NA12877_ch_T0000275:1;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336092	9336219	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000275:1;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336220	9336331	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000275:2;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9336220	9336331	.	+	0	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:NA12877_ch_T0000275:2;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336332	9336439	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000275:2;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336440	9336578	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000275:3;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9336440	9336578	.	+	2	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:NA12877_ch_T0000275:3;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336579	9336684	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000275:3;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336685	9336766	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000275:4;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9336685	9336736	.	+	1	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=CDS:NA12877_ch_T0000275:4;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9336734	9336736	.	+	0	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=stop_codon:NA12877_ch_T0000275;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336767	9337460	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000275:4;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9337461	9337671	.	+	.	source_transcript=hg002_chrY_paternal_236.3;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.3;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000275;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000275;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000275:5;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9334857	9337671	1000	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=299.571;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000276;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_G0000120;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=NA12877_ch_T0000276;Name=TSPY10P
NA12877_chrY	CAT	exon	9334857	9335406	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000276;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000276;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000276:0;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9335407	9336013	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000276;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000276;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000276:0;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336014	9336091	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000276;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000276;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000276:1;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336092	9336219	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000276;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000276;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000276:1;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336220	9336331	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000276;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000276;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000276:2;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336332	9336439	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000276;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000276;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000276:2;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336440	9336578	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000276;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000276;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000276:3;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336579	9336673	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000276;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000276;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000276:3;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9336674	9336766	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000276;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000276;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000276:4;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9336767	9337460	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000276;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000276;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=intron:NA12877_ch_T0000276:4;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9337461	9337671	.	+	.	source_transcript=hg002_chrY_paternal_236.4;source_transcript_name=hg002_chrY_paternal_236.1;source_gene=hg002_chrY_paternal_236;source_gene_biotype=pseudogene;original_gene_id=hg002_chrY_paternal_236;gene_biotype=pseudogene;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_236.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_236.4;transcript_score=299.571;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10P;alternative_source_transcripts=hg002_chrY_paternal_236.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000276;gene_id=NA12877_ch_G0000120;Parent=NA12877_ch_T0000276;transcript_name=hg002_chrY_paternal_236.1;gene_name=TSPY10P;ID=exon:NA12877_ch_T0000276:5;Name=TSPY10P;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9346929	9352517	.	-	.	source_gene_common_name=FAM197Y3;source_gene=hg002_chrY_paternal_199;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;gene_id=NA12877_ch_G0000121;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=NA12877_ch_G0000121;Name=FAM197Y3
NA12877_chrY	CAT	transcript	9346929	9352517	1000	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=NA12877_ch_T0000277;gene_id=NA12877_ch_G0000121;Parent=NA12877_ch_G0000121;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=NA12877_ch_T0000277;Name=FAM197Y3
NA12877_chrY	CAT	exon	9346929	9346988	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=NA12877_ch_T0000277;gene_id=NA12877_ch_G0000121;Parent=NA12877_ch_T0000277;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000277:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9346989	9350537	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=NA12877_ch_T0000277;gene_id=NA12877_ch_G0000121;Parent=NA12877_ch_T0000277;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000277:0;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9350538	9350696	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=NA12877_ch_T0000277;gene_id=NA12877_ch_G0000121;Parent=NA12877_ch_T0000277;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000277:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9350697	9352183	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=NA12877_ch_T0000277;gene_id=NA12877_ch_G0000121;Parent=NA12877_ch_T0000277;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000277:1;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9352184	9352329	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=NA12877_ch_T0000277;gene_id=NA12877_ch_G0000121;Parent=NA12877_ch_T0000277;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000277:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9352330	9352415	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=NA12877_ch_T0000277;gene_id=NA12877_ch_G0000121;Parent=NA12877_ch_T0000277;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=intron:NA12877_ch_T0000277:2;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9352416	9352517	.	-	.	source_transcript=hg002_chrY_paternal_199.1;source_transcript_name=hg002_chrY_paternal_199.1;source_gene=hg002_chrY_paternal_199;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_199;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_199.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;alternative_source_transcripts=hg002_chrY_paternal_237.1,hg002_chrY_paternal_237.1;transcript_id=NA12877_ch_T0000277;gene_id=NA12877_ch_G0000121;Parent=NA12877_ch_T0000277;transcript_name=hg002_chrY_paternal_199.1;gene_name=FAM197Y3;ID=exon:NA12877_ch_T0000277:3;Name=FAM197Y3;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9355130	9357944	.	+	.	source_gene_common_name=TSPY10;source_gene=hg002_chrY_paternal_238;alternative_source_transcripts=hg002_chrY_paternal_238.3;gene_id=NA12877_ch_G0000122;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=augTM,transMap;ID=NA12877_ch_G0000122;Name=TSPY10
NA12877_chrY	CAT	transcript	9355130	9357944	1000	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_G0000122;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=NA12877_ch_T0000278;Name=TSPY10
NA12877_chrY	CAT	exon	9355130	9355679	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000278:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9355176	9355679	.	+	0	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000278:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9355176	9355178	.	+	0	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=start_codon:NA12877_ch_T0000278;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9355680	9356286	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000278:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9356287	9356364	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000278:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9356287	9356364	.	+	0	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000278:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9356365	9356492	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000278:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9356493	9356604	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000278:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9356493	9356604	.	+	0	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000278:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9356605	9356712	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000278:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9356713	9356851	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000278:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9356713	9356851	.	+	2	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000278:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9356852	9356957	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000278:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9356958	9357039	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000278:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9356958	9357009	.	+	1	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=CDS:NA12877_ch_T0000278:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9357007	9357009	.	+	0	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=stop_codon:NA12877_ch_T0000278;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9357040	9357733	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000278:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9357734	9357944	.	+	.	source_transcript=hg002_chrY_paternal_238.3;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.3;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000278;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000278;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000278:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9355130	9357944	1000	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=299.828;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000279;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_G0000122;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=NA12877_ch_T0000279;Name=TSPY10
NA12877_chrY	CAT	exon	9355130	9355679	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000279;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000279;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000279:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9355680	9356286	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000279;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000279;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000279:0;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9356287	9356364	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000279;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000279;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000279:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9356365	9356492	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000279;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000279;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000279:1;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9356493	9356604	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000279;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000279;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000279:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9356605	9356712	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000279;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000279;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000279:2;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9356713	9356851	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000279;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000279;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000279:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9356852	9356946	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000279;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000279;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000279:3;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9356947	9357039	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000279;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000279;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000279:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9357040	9357733	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000279;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000279;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=intron:NA12877_ch_T0000279:4;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9357734	9357944	.	+	.	source_transcript=hg002_chrY_paternal_238.4;source_transcript_name=hg002_chrY_paternal_238.4;source_gene=hg002_chrY_paternal_238;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_238;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_238.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_238.4;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=hg002_chrY_paternal_238.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000279;gene_id=NA12877_ch_G0000122;Parent=NA12877_ch_T0000279;transcript_name=hg002_chrY_paternal_238.4;gene_name=TSPY10;ID=exon:NA12877_ch_T0000279:5;Name=TSPY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9367214	9372907	.	-	.	source_gene_common_name=FAM197Y2;source_gene=hg002_chrY_paternal_215;gene_id=NA12877_ch_G0000123;gene_biotype=lncRNA;gene_name=FAM197Y2;gene_sources=liftoff;ID=NA12877_ch_G0000123;Name=FAM197Y2
NA12877_chrY	CAT	transcript	9367214	9372907	1000	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=NA12877_ch_T0000280;gene_id=NA12877_ch_G0000123;Parent=NA12877_ch_G0000123;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=NA12877_ch_T0000280;Name=FAM197Y2
NA12877_chrY	CAT	exon	9367214	9367273	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=NA12877_ch_T0000280;gene_id=NA12877_ch_G0000123;Parent=NA12877_ch_T0000280;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000280:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9367274	9370823	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=NA12877_ch_T0000280;gene_id=NA12877_ch_G0000123;Parent=NA12877_ch_T0000280;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000280:0;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9370824	9370982	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=NA12877_ch_T0000280;gene_id=NA12877_ch_G0000123;Parent=NA12877_ch_T0000280;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000280:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9370983	9372484	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=NA12877_ch_T0000280;gene_id=NA12877_ch_G0000123;Parent=NA12877_ch_T0000280;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000280:1;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9372485	9372630	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=NA12877_ch_T0000280;gene_id=NA12877_ch_G0000123;Parent=NA12877_ch_T0000280;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000280:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9372631	9372716	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=NA12877_ch_T0000280;gene_id=NA12877_ch_G0000123;Parent=NA12877_ch_T0000280;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=intron:NA12877_ch_T0000280:2;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9372717	9372907	.	-	.	source_transcript=hg002_chrY_paternal_215.1;source_transcript_name=hg002_chrY_paternal_215.1;source_gene=hg002_chrY_paternal_215;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_215;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_215.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_215.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=NA12877_ch_T0000280;gene_id=NA12877_ch_G0000123;Parent=NA12877_ch_T0000280;transcript_name=hg002_chrY_paternal_215.1;gene_name=FAM197Y2;ID=exon:NA12877_ch_T0000280:3;Name=FAM197Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9375431	9378243	.	+	.	source_gene_common_name=TSPY9;source_gene=hg002_chrY_paternal_240;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;gene_id=NA12877_ch_G0000124;gene_biotype=protein_coding;gene_name=TSPY9;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000124;Name=TSPY9
NA12877_chrY	CAT	transcript	9375431	9378243	100	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_G0000124;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=NA12877_ch_T0000281;Name=TSPY9
NA12877_chrY	CAT	exon	9375431	9375980	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:NA12877_ch_T0000281:0;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9375477	9375980	.	+	0	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:NA12877_ch_T0000281:0;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9375477	9375479	.	+	0	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=start_codon:NA12877_ch_T0000281;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9375981	9376587	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:NA12877_ch_T0000281:0;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9376588	9376665	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:NA12877_ch_T0000281:1;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9376588	9376665	.	+	0	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:NA12877_ch_T0000281:1;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9376666	9376793	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:NA12877_ch_T0000281:1;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9376794	9376905	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:NA12877_ch_T0000281:2;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9376794	9376905	.	+	0	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:NA12877_ch_T0000281:2;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9376906	9377006	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:NA12877_ch_T0000281:2;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9377007	9377152	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:NA12877_ch_T0000281:3;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9377007	9377152	.	+	2	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:NA12877_ch_T0000281:3;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9377153	9377258	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:NA12877_ch_T0000281:3;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9377259	9377340	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:NA12877_ch_T0000281:4;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9377259	9377340	.	+	0	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:NA12877_ch_T0000281:4;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9377341	9378032	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:NA12877_ch_T0000281:4;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9378033	9378243	.	+	.	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:NA12877_ch_T0000281:5;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9378033	9378055	.	+	2	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:NA12877_ch_T0000281:5;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9378053	9378055	.	+	0	source_transcript=hg002_chrY_paternal_240.1;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.1,hg002_chrY_paternal_240.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000281;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000281;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=stop_codon:NA12877_ch_T0000281;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	9375431	9378243	100	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_G0000124;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=NA12877_ch_T0000282;Name=TSPY9
NA12877_chrY	CAT	exon	9375431	9375980	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:NA12877_ch_T0000282:0;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9375477	9375980	.	+	0	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:NA12877_ch_T0000282:0;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9375477	9375479	.	+	0	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=start_codon:NA12877_ch_T0000282;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9375981	9376587	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:NA12877_ch_T0000282:0;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9376588	9376665	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:NA12877_ch_T0000282:1;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9376588	9376665	.	+	0	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:NA12877_ch_T0000282:1;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9376666	9376793	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:NA12877_ch_T0000282:1;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9376794	9376905	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:NA12877_ch_T0000282:2;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9376794	9376905	.	+	0	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:NA12877_ch_T0000282:2;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9376906	9377006	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:NA12877_ch_T0000282:2;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9377007	9377152	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:NA12877_ch_T0000282:3;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9377007	9377152	.	+	2	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:NA12877_ch_T0000282:3;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9377153	9377247	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:NA12877_ch_T0000282:3;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9377248	9377340	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:NA12877_ch_T0000282:4;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9377248	9377310	.	+	0	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=CDS:NA12877_ch_T0000282:4;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9377308	9377310	.	+	0	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=stop_codon:NA12877_ch_T0000282;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9377341	9378032	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=intron:NA12877_ch_T0000282:4;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9378033	9378243	.	+	.	source_transcript=hg002_chrY_paternal_240.2;source_transcript_name=hg002_chrY_paternal_240.2;source_gene=hg002_chrY_paternal_240;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_240;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_240.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_240.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;alternative_source_transcripts=hg002_chrY_paternal_240.2,hg002_chrY_paternal_240.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000282;gene_id=NA12877_ch_G0000124;Parent=NA12877_ch_T0000282;transcript_name=hg002_chrY_paternal_240.2;gene_name=TSPY9;ID=exon:NA12877_ch_T0000282:5;Name=TSPY9;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9458297	9462729	.	-	.	source_gene_common_name=RBMY3AP;source_gene=hg002_chrY_paternal_242;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;gene_id=NA12877_ch_G0000125;gene_biotype=transcribed_pseudogene;gene_name=RBMY3AP;gene_sources=liftoff;ID=NA12877_ch_G0000125;Name=RBMY3AP
NA12877_chrY	CAT	transcript	9458297	9462729	1000	-	.	source_transcript=hg002_chrY_paternal_242.1;source_transcript_name=hg002_chrY_paternal_242.1;source_gene=hg002_chrY_paternal_242;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_242;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_242.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_242.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;transcript_id=NA12877_ch_T0000283;gene_id=NA12877_ch_G0000125;Parent=NA12877_ch_G0000125;transcript_name=hg002_chrY_paternal_242.1;gene_name=RBMY3AP;ID=NA12877_ch_T0000283;Name=RBMY3AP
NA12877_chrY	CAT	exon	9458297	9458447	.	-	.	source_transcript=hg002_chrY_paternal_242.1;source_transcript_name=hg002_chrY_paternal_242.1;source_gene=hg002_chrY_paternal_242;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_242;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_242.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;transcript_id=NA12877_ch_T0000283;gene_id=NA12877_ch_G0000125;Parent=NA12877_ch_T0000283;transcript_name=hg002_chrY_paternal_242.1;gene_name=RBMY3AP;ID=exon:NA12877_ch_T0000283:0;Name=RBMY3AP;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9458448	9462357	.	-	.	source_transcript=hg002_chrY_paternal_242.1;source_transcript_name=hg002_chrY_paternal_242.1;source_gene=hg002_chrY_paternal_242;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_242;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_242.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;transcript_id=NA12877_ch_T0000283;gene_id=NA12877_ch_G0000125;Parent=NA12877_ch_T0000283;transcript_name=hg002_chrY_paternal_242.1;gene_name=RBMY3AP;ID=intron:NA12877_ch_T0000283:0;Name=RBMY3AP;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9462358	9462459	.	-	.	source_transcript=hg002_chrY_paternal_242.1;source_transcript_name=hg002_chrY_paternal_242.1;source_gene=hg002_chrY_paternal_242;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_242;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_242.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;transcript_id=NA12877_ch_T0000283;gene_id=NA12877_ch_G0000125;Parent=NA12877_ch_T0000283;transcript_name=hg002_chrY_paternal_242.1;gene_name=RBMY3AP;ID=exon:NA12877_ch_T0000283:1;Name=RBMY3AP;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9462460	9462665	.	-	.	source_transcript=hg002_chrY_paternal_242.1;source_transcript_name=hg002_chrY_paternal_242.1;source_gene=hg002_chrY_paternal_242;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_242;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_242.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;transcript_id=NA12877_ch_T0000283;gene_id=NA12877_ch_G0000125;Parent=NA12877_ch_T0000283;transcript_name=hg002_chrY_paternal_242.1;gene_name=RBMY3AP;ID=intron:NA12877_ch_T0000283:1;Name=RBMY3AP;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9462666	9462729	.	-	.	source_transcript=hg002_chrY_paternal_242.1;source_transcript_name=hg002_chrY_paternal_242.1;source_gene=hg002_chrY_paternal_242;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_242;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_242.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;alternative_source_transcripts=hg002_chrY_paternal_242.1,hg002_chrY_paternal_242.1;transcript_id=NA12877_ch_T0000283;gene_id=NA12877_ch_G0000125;Parent=NA12877_ch_T0000283;transcript_name=hg002_chrY_paternal_242.1;gene_name=RBMY3AP;ID=exon:NA12877_ch_T0000283:2;Name=RBMY3AP;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9538684	9541283	.	+	.	source_gene_common_name=TTTY8;source_gene=hg002_chrY_paternal_245;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;gene_id=NA12877_ch_G0000126;gene_biotype=lncRNA;gene_name=TTTY8;gene_sources=liftoff;ID=NA12877_ch_G0000126;Name=TTTY8
NA12877_chrY	CAT	transcript	9538684	9541283	1000	+	.	source_transcript=hg002_chrY_paternal_245.1;source_transcript_name=hg002_chrY_paternal_245.1;source_gene=hg002_chrY_paternal_245;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_245;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_245.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_245.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;transcript_id=NA12877_ch_T0000284;gene_id=NA12877_ch_G0000126;Parent=NA12877_ch_G0000126;transcript_name=hg002_chrY_paternal_245.1;gene_name=TTTY8;ID=NA12877_ch_T0000284;Name=TTTY8
NA12877_chrY	CAT	exon	9538684	9538819	.	+	.	source_transcript=hg002_chrY_paternal_245.1;source_transcript_name=hg002_chrY_paternal_245.1;source_gene=hg002_chrY_paternal_245;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_245;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_245.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;transcript_id=NA12877_ch_T0000284;gene_id=NA12877_ch_G0000126;Parent=NA12877_ch_T0000284;transcript_name=hg002_chrY_paternal_245.1;gene_name=TTTY8;ID=exon:NA12877_ch_T0000284:0;Name=TTTY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9538820	9539296	.	+	.	source_transcript=hg002_chrY_paternal_245.1;source_transcript_name=hg002_chrY_paternal_245.1;source_gene=hg002_chrY_paternal_245;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_245;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_245.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;transcript_id=NA12877_ch_T0000284;gene_id=NA12877_ch_G0000126;Parent=NA12877_ch_T0000284;transcript_name=hg002_chrY_paternal_245.1;gene_name=TTTY8;ID=intron:NA12877_ch_T0000284:0;Name=TTTY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9539297	9539501	.	+	.	source_transcript=hg002_chrY_paternal_245.1;source_transcript_name=hg002_chrY_paternal_245.1;source_gene=hg002_chrY_paternal_245;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_245;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_245.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;transcript_id=NA12877_ch_T0000284;gene_id=NA12877_ch_G0000126;Parent=NA12877_ch_T0000284;transcript_name=hg002_chrY_paternal_245.1;gene_name=TTTY8;ID=exon:NA12877_ch_T0000284:1;Name=TTTY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9539502	9541093	.	+	.	source_transcript=hg002_chrY_paternal_245.1;source_transcript_name=hg002_chrY_paternal_245.1;source_gene=hg002_chrY_paternal_245;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_245;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_245.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;transcript_id=NA12877_ch_T0000284;gene_id=NA12877_ch_G0000126;Parent=NA12877_ch_T0000284;transcript_name=hg002_chrY_paternal_245.1;gene_name=TTTY8;ID=intron:NA12877_ch_T0000284:1;Name=TTTY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9541094	9541283	.	+	.	source_transcript=hg002_chrY_paternal_245.1;source_transcript_name=hg002_chrY_paternal_245.1;source_gene=hg002_chrY_paternal_245;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_245;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_245.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=hg002_chrY_paternal_245.1,hg002_chrY_paternal_245.1;transcript_id=NA12877_ch_T0000284;gene_id=NA12877_ch_G0000126;Parent=NA12877_ch_T0000284;transcript_name=hg002_chrY_paternal_245.1;gene_name=TTTY8;ID=exon:NA12877_ch_T0000284:2;Name=TTTY8;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9554408	9562846	.	-	.	source_gene_common_name=TTTY7B;source_gene=hg002_chrY_paternal_246;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;gene_id=NA12877_ch_G0000127;gene_biotype=lncRNA;gene_name=TTTY7B;gene_sources=liftoff;ID=NA12877_ch_G0000127;Name=TTTY7B
NA12877_chrY	CAT	transcript	9554408	9562846	1000	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=NA12877_ch_T0000285;gene_id=NA12877_ch_G0000127;Parent=NA12877_ch_G0000127;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=NA12877_ch_T0000285;Name=TTTY7B
NA12877_chrY	CAT	exon	9554408	9554653	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=NA12877_ch_T0000285;gene_id=NA12877_ch_G0000127;Parent=NA12877_ch_T0000285;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=exon:NA12877_ch_T0000285:0;Name=TTTY7B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9554654	9556128	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=NA12877_ch_T0000285;gene_id=NA12877_ch_G0000127;Parent=NA12877_ch_T0000285;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=intron:NA12877_ch_T0000285:0;Name=TTTY7B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9556129	9556242	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=NA12877_ch_T0000285;gene_id=NA12877_ch_G0000127;Parent=NA12877_ch_T0000285;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=exon:NA12877_ch_T0000285:1;Name=TTTY7B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9556243	9558159	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=NA12877_ch_T0000285;gene_id=NA12877_ch_G0000127;Parent=NA12877_ch_T0000285;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=intron:NA12877_ch_T0000285:1;Name=TTTY7B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9558160	9558636	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=NA12877_ch_T0000285;gene_id=NA12877_ch_G0000127;Parent=NA12877_ch_T0000285;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=exon:NA12877_ch_T0000285:2;Name=TTTY7B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9558637	9559324	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=NA12877_ch_T0000285;gene_id=NA12877_ch_G0000127;Parent=NA12877_ch_T0000285;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=intron:NA12877_ch_T0000285:2;Name=TTTY7B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9559325	9559399	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=NA12877_ch_T0000285;gene_id=NA12877_ch_G0000127;Parent=NA12877_ch_T0000285;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=exon:NA12877_ch_T0000285:3;Name=TTTY7B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9559400	9561706	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=NA12877_ch_T0000285;gene_id=NA12877_ch_G0000127;Parent=NA12877_ch_T0000285;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=intron:NA12877_ch_T0000285:3;Name=TTTY7B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9561707	9561868	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=NA12877_ch_T0000285;gene_id=NA12877_ch_G0000127;Parent=NA12877_ch_T0000285;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=exon:NA12877_ch_T0000285:4;Name=TTTY7B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9561869	9562809	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=NA12877_ch_T0000285;gene_id=NA12877_ch_G0000127;Parent=NA12877_ch_T0000285;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=intron:NA12877_ch_T0000285:4;Name=TTTY7B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9562810	9562846	.	-	.	source_transcript=hg002_chrY_paternal_246.1;source_transcript_name=hg002_chrY_paternal_246.1;source_gene=hg002_chrY_paternal_246;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_246;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_246.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=hg002_chrY_paternal_246.1,hg002_chrY_paternal_246.1;transcript_id=NA12877_ch_T0000285;gene_id=NA12877_ch_G0000127;Parent=NA12877_ch_T0000285;transcript_name=hg002_chrY_paternal_246.1;gene_name=TTTY7B;ID=exon:NA12877_ch_T0000285:5;Name=TTTY7B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9565237	9568880	.	-	.	source_gene_common_name=TTTY21B;source_gene=hg002_chrY_paternal_82;alternative_source_transcripts=hg002_chrY_paternal_247.1,hg002_chrY_paternal_247.1;gene_id=NA12877_ch_G0000128;gene_biotype=lncRNA;gene_name=TTTY21B;gene_sources=liftoff;ID=NA12877_ch_G0000128;Name=TTTY21B
NA12877_chrY	CAT	transcript	9565237	9568880	1000	-	.	source_transcript=hg002_chrY_paternal_82.1;source_transcript_name=hg002_chrY_paternal_82.1;source_gene=hg002_chrY_paternal_82;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_82;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_82.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_82.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21B;alternative_source_transcripts=hg002_chrY_paternal_247.1,hg002_chrY_paternal_247.1;transcript_id=NA12877_ch_T0000286;gene_id=NA12877_ch_G0000128;Parent=NA12877_ch_G0000128;transcript_name=hg002_chrY_paternal_82.1;gene_name=TTTY21B;ID=NA12877_ch_T0000286;Name=TTTY21B
NA12877_chrY	CAT	exon	9565237	9565341	.	-	.	source_transcript=hg002_chrY_paternal_82.1;source_transcript_name=hg002_chrY_paternal_82.1;source_gene=hg002_chrY_paternal_82;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_82;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_82.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_82.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21B;alternative_source_transcripts=hg002_chrY_paternal_247.1,hg002_chrY_paternal_247.1;transcript_id=NA12877_ch_T0000286;gene_id=NA12877_ch_G0000128;Parent=NA12877_ch_T0000286;transcript_name=hg002_chrY_paternal_82.1;gene_name=TTTY21B;ID=exon:NA12877_ch_T0000286:0;Name=TTTY21B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9565342	9568678	.	-	.	source_transcript=hg002_chrY_paternal_82.1;source_transcript_name=hg002_chrY_paternal_82.1;source_gene=hg002_chrY_paternal_82;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_82;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_82.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_82.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21B;alternative_source_transcripts=hg002_chrY_paternal_247.1,hg002_chrY_paternal_247.1;transcript_id=NA12877_ch_T0000286;gene_id=NA12877_ch_G0000128;Parent=NA12877_ch_T0000286;transcript_name=hg002_chrY_paternal_82.1;gene_name=TTTY21B;ID=intron:NA12877_ch_T0000286:0;Name=TTTY21B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9568679	9568880	.	-	.	source_transcript=hg002_chrY_paternal_82.1;source_transcript_name=hg002_chrY_paternal_82.1;source_gene=hg002_chrY_paternal_82;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_82;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_82.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_82.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY21B;alternative_source_transcripts=hg002_chrY_paternal_247.1,hg002_chrY_paternal_247.1;transcript_id=NA12877_ch_T0000286;gene_id=NA12877_ch_G0000128;Parent=NA12877_ch_T0000286;transcript_name=hg002_chrY_paternal_82.1;gene_name=TTTY21B;ID=exon:NA12877_ch_T0000286:1;Name=TTTY21B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9583870	9606060	.	+	.	source_gene_common_name=TTTY2B;source_gene=hg002_chrY_paternal_81;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;gene_id=NA12877_ch_G0000129;gene_biotype=lncRNA;gene_name=TTTY2B;gene_sources=liftoff;ID=NA12877_ch_G0000129;Name=TTTY2B
NA12877_chrY	CAT	transcript	9583870	9606060	1000	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_G0000129;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=NA12877_ch_T0000287;Name=TTTY2B
NA12877_chrY	CAT	exon	9583870	9584074	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:NA12877_ch_T0000287:0;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9584075	9589907	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:NA12877_ch_T0000287:0;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9589908	9589985	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:NA12877_ch_T0000287:1;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9589986	9592461	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:NA12877_ch_T0000287:1;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9592462	9592548	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:NA12877_ch_T0000287:2;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9592549	9599932	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:NA12877_ch_T0000287:2;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9599933	9600081	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:NA12877_ch_T0000287:3;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9600082	9600773	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:NA12877_ch_T0000287:3;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9600774	9600930	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:NA12877_ch_T0000287:4;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9600931	9603760	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:NA12877_ch_T0000287:4;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9603761	9603839	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:NA12877_ch_T0000287:5;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9603840	9603959	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:NA12877_ch_T0000287:5;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9603960	9604157	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:NA12877_ch_T0000287:6;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9604158	9605380	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=intron:NA12877_ch_T0000287:6;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9605381	9606060	.	+	.	source_transcript=hg002_chrY_paternal_81.1;source_transcript_name=hg002_chrY_paternal_81.1;source_gene=hg002_chrY_paternal_81;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_81;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_81.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_81.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=hg002_chrY_paternal_248.1,hg002_chrY_paternal_248.1;transcript_id=NA12877_ch_T0000287;gene_id=NA12877_ch_G0000129;Parent=NA12877_ch_T0000287;transcript_name=hg002_chrY_paternal_81.1;gene_name=TTTY2B;ID=exon:NA12877_ch_T0000287:7;Name=TTTY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9600740	9621904	.	-	.	source_gene_common_name=TTTY1;source_gene=hg002_chrY_paternal_80;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;gene_id=NA12877_ch_G0000130;gene_biotype=lncRNA;gene_name=TTTY1;gene_sources=liftoff;ID=NA12877_ch_G0000130;Name=TTTY1
NA12877_chrY	CAT	transcript	9600740	9621904	1000	-	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=NA12877_ch_T0000288;gene_id=NA12877_ch_G0000130;Parent=NA12877_ch_G0000130;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=NA12877_ch_T0000288;Name=TTTY1
NA12877_chrY	CAT	exon	9600740	9600997	.	-	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=NA12877_ch_T0000288;gene_id=NA12877_ch_G0000130;Parent=NA12877_ch_T0000288;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=exon:NA12877_ch_T0000288:0;Name=TTTY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9600998	9608578	.	-	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=NA12877_ch_T0000288;gene_id=NA12877_ch_G0000130;Parent=NA12877_ch_T0000288;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=intron:NA12877_ch_T0000288:0;Name=TTTY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9608579	9608716	.	-	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=NA12877_ch_T0000288;gene_id=NA12877_ch_G0000130;Parent=NA12877_ch_T0000288;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=exon:NA12877_ch_T0000288:1;Name=TTTY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9608717	9611072	.	-	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=NA12877_ch_T0000288;gene_id=NA12877_ch_G0000130;Parent=NA12877_ch_T0000288;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=intron:NA12877_ch_T0000288:1;Name=TTTY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9611073	9611181	.	-	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=NA12877_ch_T0000288;gene_id=NA12877_ch_G0000130;Parent=NA12877_ch_T0000288;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=exon:NA12877_ch_T0000288:2;Name=TTTY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9611182	9618045	.	-	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=NA12877_ch_T0000288;gene_id=NA12877_ch_G0000130;Parent=NA12877_ch_T0000288;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=intron:NA12877_ch_T0000288:2;Name=TTTY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9618046	9618205	.	-	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=NA12877_ch_T0000288;gene_id=NA12877_ch_G0000130;Parent=NA12877_ch_T0000288;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=exon:NA12877_ch_T0000288:3;Name=TTTY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9618206	9621629	.	-	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=NA12877_ch_T0000288;gene_id=NA12877_ch_G0000130;Parent=NA12877_ch_T0000288;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=intron:NA12877_ch_T0000288:3;Name=TTTY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9621630	9621904	.	-	.	source_transcript=hg002_chrY_paternal_80.1;source_transcript_name=hg002_chrY_paternal_80.1;source_gene=hg002_chrY_paternal_80;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_80;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_80.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_80.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=hg002_chrY_paternal_249.1,hg002_chrY_paternal_249.1;transcript_id=NA12877_ch_T0000288;gene_id=NA12877_ch_G0000130;Parent=NA12877_ch_T0000288;transcript_name=hg002_chrY_paternal_80.1;gene_name=TTTY1;ID=exon:NA12877_ch_T0000288:4;Name=TTTY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9642375	9645682	.	+	.	source_gene_common_name=LOC107987342;source_gene=hg002_chrY_paternal_79;gene_id=NA12877_ch_G0000131;gene_biotype=lncRNA;gene_name=LOC107987342;gene_sources=liftoff;ID=NA12877_ch_G0000131;Name=LOC107987342
NA12877_chrY	CAT	transcript	9642375	9645682	1000	+	.	source_transcript=hg002_chrY_paternal_79.1;source_transcript_name=hg002_chrY_paternal_79.1;source_gene=hg002_chrY_paternal_79;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_79;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_79.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_79.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987342;transcript_id=NA12877_ch_T0000289;gene_id=NA12877_ch_G0000131;Parent=NA12877_ch_G0000131;transcript_name=hg002_chrY_paternal_79.1;gene_name=LOC107987342;ID=NA12877_ch_T0000289;Name=LOC107987342
NA12877_chrY	CAT	exon	9642375	9642553	.	+	.	source_transcript=hg002_chrY_paternal_79.1;source_transcript_name=hg002_chrY_paternal_79.1;source_gene=hg002_chrY_paternal_79;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_79;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_79.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_79.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987342;transcript_id=NA12877_ch_T0000289;gene_id=NA12877_ch_G0000131;Parent=NA12877_ch_T0000289;transcript_name=hg002_chrY_paternal_79.1;gene_name=LOC107987342;ID=exon:NA12877_ch_T0000289:0;Name=LOC107987342;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9642554	9642929	.	+	.	source_transcript=hg002_chrY_paternal_79.1;source_transcript_name=hg002_chrY_paternal_79.1;source_gene=hg002_chrY_paternal_79;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_79;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_79.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_79.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987342;transcript_id=NA12877_ch_T0000289;gene_id=NA12877_ch_G0000131;Parent=NA12877_ch_T0000289;transcript_name=hg002_chrY_paternal_79.1;gene_name=LOC107987342;ID=intron:NA12877_ch_T0000289:0;Name=LOC107987342;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9642930	9643002	.	+	.	source_transcript=hg002_chrY_paternal_79.1;source_transcript_name=hg002_chrY_paternal_79.1;source_gene=hg002_chrY_paternal_79;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_79;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_79.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_79.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987342;transcript_id=NA12877_ch_T0000289;gene_id=NA12877_ch_G0000131;Parent=NA12877_ch_T0000289;transcript_name=hg002_chrY_paternal_79.1;gene_name=LOC107987342;ID=exon:NA12877_ch_T0000289:1;Name=LOC107987342;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9643003	9645533	.	+	.	source_transcript=hg002_chrY_paternal_79.1;source_transcript_name=hg002_chrY_paternal_79.1;source_gene=hg002_chrY_paternal_79;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_79;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_79.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_79.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987342;transcript_id=NA12877_ch_T0000289;gene_id=NA12877_ch_G0000131;Parent=NA12877_ch_T0000289;transcript_name=hg002_chrY_paternal_79.1;gene_name=LOC107987342;ID=intron:NA12877_ch_T0000289:1;Name=LOC107987342;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9645534	9645682	.	+	.	source_transcript=hg002_chrY_paternal_79.1;source_transcript_name=hg002_chrY_paternal_79.1;source_gene=hg002_chrY_paternal_79;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_79;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_79.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_79.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987342;transcript_id=NA12877_ch_T0000289;gene_id=NA12877_ch_G0000131;Parent=NA12877_ch_T0000289;transcript_name=hg002_chrY_paternal_79.1;gene_name=LOC107987342;ID=exon:NA12877_ch_T0000289:2;Name=LOC107987342;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9648738	9660828	.	+	.	source_gene_common_name=TTTY22;source_gene=hg002_chrY_paternal_78;gene_id=NA12877_ch_G0000132;gene_biotype=lncRNA;gene_name=TTTY22;gene_sources=liftoff;ID=NA12877_ch_G0000132;Name=TTTY22
NA12877_chrY	CAT	transcript	9648738	9660828	1000	+	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=NA12877_ch_T0000290;gene_id=NA12877_ch_G0000132;Parent=NA12877_ch_G0000132;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=NA12877_ch_T0000290;Name=TTTY22
NA12877_chrY	CAT	exon	9648738	9648892	.	+	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=NA12877_ch_T0000290;gene_id=NA12877_ch_G0000132;Parent=NA12877_ch_T0000290;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=exon:NA12877_ch_T0000290:0;Name=TTTY22;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9648893	9652356	.	+	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=NA12877_ch_T0000290;gene_id=NA12877_ch_G0000132;Parent=NA12877_ch_T0000290;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=intron:NA12877_ch_T0000290:0;Name=TTTY22;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9652357	9652468	.	+	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=NA12877_ch_T0000290;gene_id=NA12877_ch_G0000132;Parent=NA12877_ch_T0000290;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=exon:NA12877_ch_T0000290:1;Name=TTTY22;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9652469	9656893	.	+	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=NA12877_ch_T0000290;gene_id=NA12877_ch_G0000132;Parent=NA12877_ch_T0000290;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=intron:NA12877_ch_T0000290:1;Name=TTTY22;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9656894	9656968	.	+	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=NA12877_ch_T0000290;gene_id=NA12877_ch_G0000132;Parent=NA12877_ch_T0000290;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=exon:NA12877_ch_T0000290:2;Name=TTTY22;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9656969	9657653	.	+	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=NA12877_ch_T0000290;gene_id=NA12877_ch_G0000132;Parent=NA12877_ch_T0000290;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=intron:NA12877_ch_T0000290:2;Name=TTTY22;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9657654	9657692	.	+	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=NA12877_ch_T0000290;gene_id=NA12877_ch_G0000132;Parent=NA12877_ch_T0000290;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=exon:NA12877_ch_T0000290:3;Name=TTTY22;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9657693	9660782	.	+	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=NA12877_ch_T0000290;gene_id=NA12877_ch_G0000132;Parent=NA12877_ch_T0000290;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=intron:NA12877_ch_T0000290:3;Name=TTTY22;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9660783	9660828	.	+	.	source_transcript=hg002_chrY_paternal_78.1;source_transcript_name=hg002_chrY_paternal_78.1;source_gene=hg002_chrY_paternal_78;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_78;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_78.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_78.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=NA12877_ch_T0000290;gene_id=NA12877_ch_G0000132;Parent=NA12877_ch_T0000290;transcript_name=hg002_chrY_paternal_78.1;gene_name=TTTY22;ID=exon:NA12877_ch_T0000290:4;Name=TTTY22;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9660898	9665092	.	+	.	source_gene_common_name=LINC00280;source_gene=hg002_chrY_paternal_77;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;gene_id=NA12877_ch_G0000133;gene_biotype=lncRNA;gene_name=LINC00280;gene_sources=liftoff;ID=NA12877_ch_G0000133;Name=LINC00280
NA12877_chrY	CAT	transcript	9660898	9665092	1000	+	.	source_transcript=hg002_chrY_paternal_77.1;source_transcript_name=hg002_chrY_paternal_77.1;source_gene=hg002_chrY_paternal_77;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_77;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_77.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_77.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;transcript_id=NA12877_ch_T0000291;gene_id=NA12877_ch_G0000133;Parent=NA12877_ch_G0000133;transcript_name=hg002_chrY_paternal_77.1;gene_name=LINC00280;ID=NA12877_ch_T0000291;Name=LINC00280
NA12877_chrY	CAT	exon	9660898	9660983	.	+	.	source_transcript=hg002_chrY_paternal_77.1;source_transcript_name=hg002_chrY_paternal_77.1;source_gene=hg002_chrY_paternal_77;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_77;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_77.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_77.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;transcript_id=NA12877_ch_T0000291;gene_id=NA12877_ch_G0000133;Parent=NA12877_ch_T0000291;transcript_name=hg002_chrY_paternal_77.1;gene_name=LINC00280;ID=exon:NA12877_ch_T0000291:0;Name=LINC00280;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9660984	9663484	.	+	.	source_transcript=hg002_chrY_paternal_77.1;source_transcript_name=hg002_chrY_paternal_77.1;source_gene=hg002_chrY_paternal_77;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_77;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_77.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_77.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;transcript_id=NA12877_ch_T0000291;gene_id=NA12877_ch_G0000133;Parent=NA12877_ch_T0000291;transcript_name=hg002_chrY_paternal_77.1;gene_name=LINC00280;ID=intron:NA12877_ch_T0000291:0;Name=LINC00280;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9663485	9663627	.	+	.	source_transcript=hg002_chrY_paternal_77.1;source_transcript_name=hg002_chrY_paternal_77.1;source_gene=hg002_chrY_paternal_77;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_77;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_77.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_77.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;transcript_id=NA12877_ch_T0000291;gene_id=NA12877_ch_G0000133;Parent=NA12877_ch_T0000291;transcript_name=hg002_chrY_paternal_77.1;gene_name=LINC00280;ID=exon:NA12877_ch_T0000291:1;Name=LINC00280;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9663628	9664873	.	+	.	source_transcript=hg002_chrY_paternal_77.1;source_transcript_name=hg002_chrY_paternal_77.1;source_gene=hg002_chrY_paternal_77;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_77;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_77.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_77.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;transcript_id=NA12877_ch_T0000291;gene_id=NA12877_ch_G0000133;Parent=NA12877_ch_T0000291;transcript_name=hg002_chrY_paternal_77.1;gene_name=LINC00280;ID=intron:NA12877_ch_T0000291:1;Name=LINC00280;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9664874	9665092	.	+	.	source_transcript=hg002_chrY_paternal_77.1;source_transcript_name=hg002_chrY_paternal_77.1;source_gene=hg002_chrY_paternal_77;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_77;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_77.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_77.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;alternative_source_transcripts=hg002_chrY_paternal_251.1,hg002_chrY_paternal_251.1;transcript_id=NA12877_ch_T0000291;gene_id=NA12877_ch_G0000133;Parent=NA12877_ch_T0000291;transcript_name=hg002_chrY_paternal_77.1;gene_name=LINC00280;ID=exon:NA12877_ch_T0000291:2;Name=LINC00280;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9755613	9755760	.	-	.	source_gene_common_name=TSPY2;source_gene=hg002_chrY_paternal_256;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.2;gene_id=NA12877_ch_G0000134;gene_biotype=protein_coding;gene_name=TSPY2;gene_sources=transMap_pairwise;ID=NA12877_ch_G0000134;Name=TSPY2
NA12877_chrY	CAT	transcript	9755613	9755760	8320	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=109.804;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.2;transcript_id=NA12877_ch_T0000292;gene_id=NA12877_ch_G0000134;Parent=NA12877_ch_G0000134;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=NA12877_ch_T0000292;Name=TSPY2
NA12877_chrY	CAT	exon	9755613	9755760	.	-	.	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=109.804;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.2;transcript_id=NA12877_ch_T0000292;gene_id=NA12877_ch_G0000134;Parent=NA12877_ch_T0000292;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=exon:NA12877_ch_T0000292:0;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	9755613	9755714	.	-	0	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=109.804;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.2;transcript_id=NA12877_ch_T0000292;gene_id=NA12877_ch_G0000134;Parent=NA12877_ch_T0000292;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=CDS:NA12877_ch_T0000292:0;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	9755613	9755615	.	-	0	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=109.804;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.2;transcript_id=NA12877_ch_T0000292;gene_id=NA12877_ch_G0000134;Parent=NA12877_ch_T0000292;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=stop_codon:NA12877_ch_T0000292;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	9755712	9755714	.	-	0	source_transcript=hg002_chrY_paternal_256.3;source_transcript_name=hg002_chrY_paternal_256.4;source_gene=hg002_chrY_paternal_256;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_256;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_256.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_256.3;transcript_score=109.804;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;alternative_source_transcripts=hg002_chrY_paternal_256.1,hg002_chrY_paternal_256.2;transcript_id=NA12877_ch_T0000292;gene_id=NA12877_ch_G0000134;Parent=NA12877_ch_T0000292;transcript_name=hg002_chrY_paternal_256.4;gene_name=TSPY2;ID=start_codon:NA12877_ch_T0000292;Name=TSPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	9758373	9759537	.	+	.	source_gene_common_name=TTTY23B;source_gene=hg002_chrY_paternal_257;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;gene_id=NA12877_ch_G0000135;gene_biotype=lncRNA;gene_name=TTTY23B;gene_sources=liftoff;ID=NA12877_ch_G0000135;Name=TTTY23B
NA12877_chrY	CAT	transcript	9758373	9759537	1000	+	.	source_transcript=hg002_chrY_paternal_257.1;source_transcript_name=hg002_chrY_paternal_257.1;source_gene=hg002_chrY_paternal_257;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_257;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_257.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_257.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;transcript_id=NA12877_ch_T0000293;gene_id=NA12877_ch_G0000135;Parent=NA12877_ch_G0000135;transcript_name=hg002_chrY_paternal_257.1;gene_name=TTTY23B;ID=NA12877_ch_T0000293;Name=TTTY23B
NA12877_chrY	CAT	exon	9758373	9758429	.	+	.	source_transcript=hg002_chrY_paternal_257.1;source_transcript_name=hg002_chrY_paternal_257.1;source_gene=hg002_chrY_paternal_257;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_257;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_257.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_257.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;transcript_id=NA12877_ch_T0000293;gene_id=NA12877_ch_G0000135;Parent=NA12877_ch_T0000293;transcript_name=hg002_chrY_paternal_257.1;gene_name=TTTY23B;ID=exon:NA12877_ch_T0000293:0;Name=TTTY23B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9758430	9758542	.	+	.	source_transcript=hg002_chrY_paternal_257.1;source_transcript_name=hg002_chrY_paternal_257.1;source_gene=hg002_chrY_paternal_257;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_257;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_257.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_257.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;transcript_id=NA12877_ch_T0000293;gene_id=NA12877_ch_G0000135;Parent=NA12877_ch_T0000293;transcript_name=hg002_chrY_paternal_257.1;gene_name=TTTY23B;ID=intron:NA12877_ch_T0000293:0;Name=TTTY23B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9758543	9758688	.	+	.	source_transcript=hg002_chrY_paternal_257.1;source_transcript_name=hg002_chrY_paternal_257.1;source_gene=hg002_chrY_paternal_257;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_257;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_257.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_257.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;transcript_id=NA12877_ch_T0000293;gene_id=NA12877_ch_G0000135;Parent=NA12877_ch_T0000293;transcript_name=hg002_chrY_paternal_257.1;gene_name=TTTY23B;ID=exon:NA12877_ch_T0000293:1;Name=TTTY23B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	9758689	9759228	.	+	.	source_transcript=hg002_chrY_paternal_257.1;source_transcript_name=hg002_chrY_paternal_257.1;source_gene=hg002_chrY_paternal_257;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_257;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_257.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_257.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;transcript_id=NA12877_ch_T0000293;gene_id=NA12877_ch_G0000135;Parent=NA12877_ch_T0000293;transcript_name=hg002_chrY_paternal_257.1;gene_name=TTTY23B;ID=intron:NA12877_ch_T0000293:1;Name=TTTY23B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	9759229	9759537	.	+	.	source_transcript=hg002_chrY_paternal_257.1;source_transcript_name=hg002_chrY_paternal_257.1;source_gene=hg002_chrY_paternal_257;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_257;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_257.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_257.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;alternative_source_transcripts=hg002_chrY_paternal_257.1,hg002_chrY_paternal_257.1;transcript_id=NA12877_ch_T0000293;gene_id=NA12877_ch_G0000135;Parent=NA12877_ch_T0000293;transcript_name=hg002_chrY_paternal_257.1;gene_name=TTTY23B;ID=exon:NA12877_ch_T0000293:2;Name=TTTY23B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	10911502	10914516	.	-	.	source_gene_common_name=LOC124904996;source_gene=hg002_chrY_paternal_275;alternative_source_transcripts=hg002_chrY_paternal_275.1,hg002_chrY_paternal_275.1;gene_id=NA12877_ch_G0000136;gene_biotype=lncRNA;gene_name=LOC124904996;gene_sources=liftoff;ID=NA12877_ch_G0000136;Name=LOC124904996
NA12877_chrY	CAT	transcript	10911502	10914516	1000	-	.	source_transcript=hg002_chrY_paternal_275.1;source_transcript_name=hg002_chrY_paternal_275.1;source_gene=hg002_chrY_paternal_275;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_275;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_275.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_275.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124904996;alternative_source_transcripts=hg002_chrY_paternal_275.1,hg002_chrY_paternal_275.1;transcript_id=NA12877_ch_T0000294;gene_id=NA12877_ch_G0000136;Parent=NA12877_ch_G0000136;transcript_name=hg002_chrY_paternal_275.1;gene_name=LOC124904996;ID=NA12877_ch_T0000294;Name=LOC124904996
NA12877_chrY	CAT	exon	10911502	10912767	.	-	.	source_transcript=hg002_chrY_paternal_275.1;source_transcript_name=hg002_chrY_paternal_275.1;source_gene=hg002_chrY_paternal_275;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_275;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_275.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_275.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124904996;alternative_source_transcripts=hg002_chrY_paternal_275.1,hg002_chrY_paternal_275.1;transcript_id=NA12877_ch_T0000294;gene_id=NA12877_ch_G0000136;Parent=NA12877_ch_T0000294;transcript_name=hg002_chrY_paternal_275.1;gene_name=LOC124904996;ID=exon:NA12877_ch_T0000294:0;Name=LOC124904996;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	10912768	10914094	.	-	.	source_transcript=hg002_chrY_paternal_275.1;source_transcript_name=hg002_chrY_paternal_275.1;source_gene=hg002_chrY_paternal_275;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_275;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_275.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_275.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124904996;alternative_source_transcripts=hg002_chrY_paternal_275.1,hg002_chrY_paternal_275.1;transcript_id=NA12877_ch_T0000294;gene_id=NA12877_ch_G0000136;Parent=NA12877_ch_T0000294;transcript_name=hg002_chrY_paternal_275.1;gene_name=LOC124904996;ID=intron:NA12877_ch_T0000294:0;Name=LOC124904996;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	10914095	10914516	.	-	.	source_transcript=hg002_chrY_paternal_275.1;source_transcript_name=hg002_chrY_paternal_275.1;source_gene=hg002_chrY_paternal_275;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_275;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_275.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_275.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124904996;alternative_source_transcripts=hg002_chrY_paternal_275.1,hg002_chrY_paternal_275.1;transcript_id=NA12877_ch_T0000294;gene_id=NA12877_ch_G0000136;Parent=NA12877_ch_T0000294;transcript_name=hg002_chrY_paternal_275.1;gene_name=LOC124904996;ID=exon:NA12877_ch_T0000294:1;Name=LOC124904996;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	10997069	11005426	.	-	.	source_gene_common_name=LOC105379273;source_gene=hg002_chrY_paternal_284;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;gene_id=NA12877_ch_G0000137;gene_biotype=lncRNA;gene_name=LOC105379273;gene_sources=liftoff;ID=NA12877_ch_G0000137;Name=LOC105379273
NA12877_chrY	CAT	transcript	10997069	11005426	1000	-	.	source_transcript=hg002_chrY_paternal_284.1;source_transcript_name=hg002_chrY_paternal_284.1;source_gene=hg002_chrY_paternal_284;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_284;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_284.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_284.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379273;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;transcript_id=NA12877_ch_T0000295;gene_id=NA12877_ch_G0000137;Parent=NA12877_ch_G0000137;transcript_name=hg002_chrY_paternal_284.1;gene_name=LOC105379273;ID=NA12877_ch_T0000295;Name=LOC105379273
NA12877_chrY	CAT	exon	10997069	10997110	.	-	.	source_transcript=hg002_chrY_paternal_284.1;source_transcript_name=hg002_chrY_paternal_284.1;source_gene=hg002_chrY_paternal_284;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_284;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_284.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_284.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379273;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;transcript_id=NA12877_ch_T0000295;gene_id=NA12877_ch_G0000137;Parent=NA12877_ch_T0000295;transcript_name=hg002_chrY_paternal_284.1;gene_name=LOC105379273;ID=exon:NA12877_ch_T0000295:0;Name=LOC105379273;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	10997111	11003172	.	-	.	source_transcript=hg002_chrY_paternal_284.1;source_transcript_name=hg002_chrY_paternal_284.1;source_gene=hg002_chrY_paternal_284;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_284;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_284.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_284.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379273;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;transcript_id=NA12877_ch_T0000295;gene_id=NA12877_ch_G0000137;Parent=NA12877_ch_T0000295;transcript_name=hg002_chrY_paternal_284.1;gene_name=LOC105379273;ID=intron:NA12877_ch_T0000295:0;Name=LOC105379273;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	11003173	11003231	.	-	.	source_transcript=hg002_chrY_paternal_284.1;source_transcript_name=hg002_chrY_paternal_284.1;source_gene=hg002_chrY_paternal_284;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_284;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_284.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_284.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379273;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;transcript_id=NA12877_ch_T0000295;gene_id=NA12877_ch_G0000137;Parent=NA12877_ch_T0000295;transcript_name=hg002_chrY_paternal_284.1;gene_name=LOC105379273;ID=exon:NA12877_ch_T0000295:1;Name=LOC105379273;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	11003232	11005366	.	-	.	source_transcript=hg002_chrY_paternal_284.1;source_transcript_name=hg002_chrY_paternal_284.1;source_gene=hg002_chrY_paternal_284;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_284;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_284.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_284.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379273;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;transcript_id=NA12877_ch_T0000295;gene_id=NA12877_ch_G0000137;Parent=NA12877_ch_T0000295;transcript_name=hg002_chrY_paternal_284.1;gene_name=LOC105379273;ID=intron:NA12877_ch_T0000295:1;Name=LOC105379273;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	11005367	11005426	.	-	.	source_transcript=hg002_chrY_paternal_284.1;source_transcript_name=hg002_chrY_paternal_284.1;source_gene=hg002_chrY_paternal_284;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_284;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_284.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_284.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379273;alternative_source_transcripts=hg002_chrY_paternal_284.1,hg002_chrY_paternal_284.1;transcript_id=NA12877_ch_T0000295;gene_id=NA12877_ch_G0000137;Parent=NA12877_ch_T0000295;transcript_name=hg002_chrY_paternal_284.1;gene_name=LOC105379273;ID=exon:NA12877_ch_T0000295:2;Name=LOC105379273;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	12911374	12918988	.	+	.	source_gene_common_name=LOC112268312;source_gene=hg002_chrY_paternal_318;gene_id=NA12877_ch_G0000138;gene_biotype=lncRNA;gene_name=LOC112268312;gene_sources=liftoff;ID=NA12877_ch_G0000138;Name=LOC112268312
NA12877_chrY	CAT	transcript	12911374	12918988	1000	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000296;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_G0000138;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=NA12877_ch_T0000296;Name=LOC112268312
NA12877_chrY	CAT	exon	12911374	12911463	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000296;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000296;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000296:0;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	12911464	12911649	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000296;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000296;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:NA12877_ch_T0000296:0;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	12911650	12911811	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000296;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000296;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000296:1;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	12911812	12917789	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000296;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000296;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:NA12877_ch_T0000296:1;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	12917790	12918988	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000296;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000296;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000296:2;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	12911374	12917925	1000	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000297;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_G0000138;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=NA12877_ch_T0000297;Name=LOC112268312
NA12877_chrY	CAT	exon	12911374	12911463	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000297;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000297;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000297:0;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	12911464	12911649	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000297;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000297;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:NA12877_ch_T0000297:0;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	12911650	12911811	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000297;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000297;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000297:1;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	12911812	12917789	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000297;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000297;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:NA12877_ch_T0000297:1;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	12917790	12917925	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000297;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000297;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000297:2;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	12911497	12918988	1000	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000298;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_G0000138;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=NA12877_ch_T0000298;Name=LOC112268312
NA12877_chrY	CAT	exon	12911497	12911515	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000298;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000298;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000298:0;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	12911516	12911649	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000298;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000298;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:NA12877_ch_T0000298:0;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	12911650	12911811	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000298;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000298;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000298:1;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	12911812	12917789	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000298;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000298;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:NA12877_ch_T0000298:1;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	12917790	12918988	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;transcript_id=NA12877_ch_T0000298;gene_id=NA12877_ch_G0000138;Parent=NA12877_ch_T0000298;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000298:2;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	12954174	12963108	.	-	.	source_gene_common_name=LOC107987343;source_gene=hg002_chrY_paternal_305;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;gene_id=NA12877_ch_G0000139;gene_biotype=lncRNA;gene_name=LOC107987343;gene_sources=liftoff;ID=NA12877_ch_G0000139;Name=LOC107987343
NA12877_chrY	CAT	transcript	12954174	12963108	1000	-	.	source_transcript=hg002_chrY_paternal_305.1;source_transcript_name=hg002_chrY_paternal_305.1;source_gene=hg002_chrY_paternal_305;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_305;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_305.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_305.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987343;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;transcript_id=NA12877_ch_T0000299;gene_id=NA12877_ch_G0000139;Parent=NA12877_ch_G0000139;transcript_name=hg002_chrY_paternal_305.1;gene_name=LOC107987343;ID=NA12877_ch_T0000299;Name=LOC107987343
NA12877_chrY	CAT	exon	12954174	12955566	.	-	.	source_transcript=hg002_chrY_paternal_305.1;source_transcript_name=hg002_chrY_paternal_305.1;source_gene=hg002_chrY_paternal_305;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_305;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_305.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_305.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987343;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;transcript_id=NA12877_ch_T0000299;gene_id=NA12877_ch_G0000139;Parent=NA12877_ch_T0000299;transcript_name=hg002_chrY_paternal_305.1;gene_name=LOC107987343;ID=exon:NA12877_ch_T0000299:0;Name=LOC107987343;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	12955567	12958128	.	-	.	source_transcript=hg002_chrY_paternal_305.1;source_transcript_name=hg002_chrY_paternal_305.1;source_gene=hg002_chrY_paternal_305;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_305;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_305.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_305.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987343;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;transcript_id=NA12877_ch_T0000299;gene_id=NA12877_ch_G0000139;Parent=NA12877_ch_T0000299;transcript_name=hg002_chrY_paternal_305.1;gene_name=LOC107987343;ID=intron:NA12877_ch_T0000299:0;Name=LOC107987343;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	12958129	12958255	.	-	.	source_transcript=hg002_chrY_paternal_305.1;source_transcript_name=hg002_chrY_paternal_305.1;source_gene=hg002_chrY_paternal_305;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_305;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_305.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_305.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987343;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;transcript_id=NA12877_ch_T0000299;gene_id=NA12877_ch_G0000139;Parent=NA12877_ch_T0000299;transcript_name=hg002_chrY_paternal_305.1;gene_name=LOC107987343;ID=exon:NA12877_ch_T0000299:1;Name=LOC107987343;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	12958256	12961212	.	-	.	source_transcript=hg002_chrY_paternal_305.1;source_transcript_name=hg002_chrY_paternal_305.1;source_gene=hg002_chrY_paternal_305;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_305;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_305.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_305.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987343;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;transcript_id=NA12877_ch_T0000299;gene_id=NA12877_ch_G0000139;Parent=NA12877_ch_T0000299;transcript_name=hg002_chrY_paternal_305.1;gene_name=LOC107987343;ID=intron:NA12877_ch_T0000299:1;Name=LOC107987343;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	12961213	12963108	.	-	.	source_transcript=hg002_chrY_paternal_305.1;source_transcript_name=hg002_chrY_paternal_305.1;source_gene=hg002_chrY_paternal_305;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_305;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_305.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_305.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987343;alternative_source_transcripts=hg002_chrY_paternal_305.1,hg002_chrY_paternal_305.1;transcript_id=NA12877_ch_T0000299;gene_id=NA12877_ch_G0000139;Parent=NA12877_ch_T0000299;transcript_name=hg002_chrY_paternal_305.1;gene_name=LOC107987343;ID=exon:NA12877_ch_T0000299:2;Name=LOC107987343;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	13005705	13021179	.	-	.	source_gene_common_name=GYG2P1;source_gene=hg002_chrY_paternal_306;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;gene_id=NA12877_ch_G0000140;gene_biotype=transcribed_pseudogene;gene_name=GYG2P1;gene_sources=liftoff;ID=NA12877_ch_G0000140;Name=GYG2P1
NA12877_chrY	CAT	transcript	13005705	13021179	1000	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=NA12877_ch_T0000300;gene_id=NA12877_ch_G0000140;Parent=NA12877_ch_G0000140;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=NA12877_ch_T0000300;Name=GYG2P1
NA12877_chrY	CAT	exon	13005705	13006089	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=NA12877_ch_T0000300;gene_id=NA12877_ch_G0000140;Parent=NA12877_ch_T0000300;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=exon:NA12877_ch_T0000300:0;Name=GYG2P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13006090	13006384	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=NA12877_ch_T0000300;gene_id=NA12877_ch_G0000140;Parent=NA12877_ch_T0000300;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=intron:NA12877_ch_T0000300:0;Name=GYG2P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13006385	13006526	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=NA12877_ch_T0000300;gene_id=NA12877_ch_G0000140;Parent=NA12877_ch_T0000300;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=exon:NA12877_ch_T0000300:1;Name=GYG2P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13006527	13006781	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=NA12877_ch_T0000300;gene_id=NA12877_ch_G0000140;Parent=NA12877_ch_T0000300;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=intron:NA12877_ch_T0000300:1;Name=GYG2P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13006782	13006898	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=NA12877_ch_T0000300;gene_id=NA12877_ch_G0000140;Parent=NA12877_ch_T0000300;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=exon:NA12877_ch_T0000300:2;Name=GYG2P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13006899	13019904	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=NA12877_ch_T0000300;gene_id=NA12877_ch_G0000140;Parent=NA12877_ch_T0000300;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=intron:NA12877_ch_T0000300:2;Name=GYG2P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13019905	13020043	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=NA12877_ch_T0000300;gene_id=NA12877_ch_G0000140;Parent=NA12877_ch_T0000300;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=exon:NA12877_ch_T0000300:3;Name=GYG2P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13020044	13021138	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=NA12877_ch_T0000300;gene_id=NA12877_ch_G0000140;Parent=NA12877_ch_T0000300;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=intron:NA12877_ch_T0000300:3;Name=GYG2P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13021139	13021179	.	-	.	source_transcript=hg002_chrY_paternal_306.1;source_transcript_name=hg002_chrY_paternal_306.1;source_gene=hg002_chrY_paternal_306;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_306;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_306.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_306.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;alternative_source_transcripts=hg002_chrY_paternal_306.1,hg002_chrY_paternal_306.1;transcript_id=NA12877_ch_T0000300;gene_id=NA12877_ch_G0000140;Parent=NA12877_ch_T0000300;transcript_name=hg002_chrY_paternal_306.1;gene_name=GYG2P1;ID=exon:NA12877_ch_T0000300:4;Name=GYG2P1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	13261103	13263271	.	-	.	source_gene_common_name=LOC112268311;source_gene=hg002_chrY_paternal_311;alternative_source_transcripts=hg002_chrY_paternal_311.1,hg002_chrY_paternal_311.1;gene_id=NA12877_ch_G0000141;gene_biotype=lncRNA;gene_name=LOC112268311;gene_sources=liftoff;ID=NA12877_ch_G0000141;Name=LOC112268311
NA12877_chrY	CAT	transcript	13261103	13263271	1000	-	.	source_transcript=hg002_chrY_paternal_311.1;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.1,hg002_chrY_paternal_311.1;transcript_id=NA12877_ch_T0000301;gene_id=NA12877_ch_G0000141;Parent=NA12877_ch_G0000141;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=NA12877_ch_T0000301;Name=LOC112268311
NA12877_chrY	CAT	exon	13261103	13262539	.	-	.	source_transcript=hg002_chrY_paternal_311.1;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.1,hg002_chrY_paternal_311.1;transcript_id=NA12877_ch_T0000301;gene_id=NA12877_ch_G0000141;Parent=NA12877_ch_T0000301;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=exon:NA12877_ch_T0000301:0;Name=LOC112268311;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13262540	13263148	.	-	.	source_transcript=hg002_chrY_paternal_311.1;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.1,hg002_chrY_paternal_311.1;transcript_id=NA12877_ch_T0000301;gene_id=NA12877_ch_G0000141;Parent=NA12877_ch_T0000301;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=intron:NA12877_ch_T0000301:0;Name=LOC112268311;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13263149	13263271	.	-	.	source_transcript=hg002_chrY_paternal_311.1;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.1,hg002_chrY_paternal_311.1;transcript_id=NA12877_ch_T0000301;gene_id=NA12877_ch_G0000141;Parent=NA12877_ch_T0000301;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=exon:NA12877_ch_T0000301:1;Name=LOC112268311;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13261103	13263280	1000	-	.	source_transcript=hg002_chrY_paternal_311.2;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.2,hg002_chrY_paternal_311.2;transcript_id=NA12877_ch_T0000302;gene_id=NA12877_ch_G0000141;Parent=NA12877_ch_G0000141;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=NA12877_ch_T0000302;Name=LOC112268311
NA12877_chrY	CAT	exon	13261103	13262539	.	-	.	source_transcript=hg002_chrY_paternal_311.2;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.2,hg002_chrY_paternal_311.2;transcript_id=NA12877_ch_T0000302;gene_id=NA12877_ch_G0000141;Parent=NA12877_ch_T0000302;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=exon:NA12877_ch_T0000302:0;Name=LOC112268311;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13262540	13263091	.	-	.	source_transcript=hg002_chrY_paternal_311.2;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.2,hg002_chrY_paternal_311.2;transcript_id=NA12877_ch_T0000302;gene_id=NA12877_ch_G0000141;Parent=NA12877_ch_T0000302;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=intron:NA12877_ch_T0000302:0;Name=LOC112268311;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13263092	13263280	.	-	.	source_transcript=hg002_chrY_paternal_311.2;source_transcript_name=hg002_chrY_paternal_311.1;source_gene=hg002_chrY_paternal_311;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_311;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_311.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_311.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268311;alternative_source_transcripts=hg002_chrY_paternal_311.2,hg002_chrY_paternal_311.2;transcript_id=NA12877_ch_T0000302;gene_id=NA12877_ch_G0000141;Parent=NA12877_ch_T0000302;transcript_name=hg002_chrY_paternal_311.1;gene_name=LOC112268311;ID=exon:NA12877_ch_T0000302:1;Name=LOC112268311;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	13262140	13292024	.	+	.	source_gene_common_name=TTTY15;source_gene=hg002_chrY_paternal_312;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;gene_id=NA12877_ch_G0000142;gene_biotype=lncRNA;gene_name=TTTY15;gene_sources=liftoff;ID=NA12877_ch_G0000142;Name=TTTY15
NA12877_chrY	CAT	transcript	13262140	13292024	1000	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=NA12877_ch_T0000303;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_G0000142;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=NA12877_ch_T0000303;Name=TTTY15
NA12877_chrY	CAT	exon	13262140	13262494	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=NA12877_ch_T0000303;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000303;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000303:0;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13262495	13264427	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=NA12877_ch_T0000303;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000303;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:NA12877_ch_T0000303:0;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13264428	13264474	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=NA12877_ch_T0000303;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000303;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000303:1;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13264475	13286303	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=NA12877_ch_T0000303;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000303;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:NA12877_ch_T0000303:1;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13286304	13286397	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=NA12877_ch_T0000303;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000303;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000303:2;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13286398	13287254	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=NA12877_ch_T0000303;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000303;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:NA12877_ch_T0000303:2;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13287255	13292024	.	+	.	source_transcript=hg002_chrY_paternal_312.1;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.1,hg002_chrY_paternal_312.1;transcript_id=NA12877_ch_T0000303;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000303;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000303:3;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13262140	13292024	1000	+	.	source_transcript=hg002_chrY_paternal_312.2;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.2,hg002_chrY_paternal_312.2;transcript_id=NA12877_ch_T0000304;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_G0000142;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=NA12877_ch_T0000304;Name=TTTY15
NA12877_chrY	CAT	exon	13262140	13262494	.	+	.	source_transcript=hg002_chrY_paternal_312.2;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.2,hg002_chrY_paternal_312.2;transcript_id=NA12877_ch_T0000304;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000304;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000304:0;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13262495	13286303	.	+	.	source_transcript=hg002_chrY_paternal_312.2;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.2,hg002_chrY_paternal_312.2;transcript_id=NA12877_ch_T0000304;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000304;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:NA12877_ch_T0000304:0;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13286304	13286397	.	+	.	source_transcript=hg002_chrY_paternal_312.2;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.2,hg002_chrY_paternal_312.2;transcript_id=NA12877_ch_T0000304;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000304;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000304:1;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13286398	13287254	.	+	.	source_transcript=hg002_chrY_paternal_312.2;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.2,hg002_chrY_paternal_312.2;transcript_id=NA12877_ch_T0000304;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000304;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:NA12877_ch_T0000304:1;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13287255	13292024	.	+	.	source_transcript=hg002_chrY_paternal_312.2;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.2,hg002_chrY_paternal_312.2;transcript_id=NA12877_ch_T0000304;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000304;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000304:2;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13262140	13292024	1000	+	.	source_transcript=hg002_chrY_paternal_312.3;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.3,hg002_chrY_paternal_312.3;transcript_id=NA12877_ch_T0000305;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_G0000142;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=NA12877_ch_T0000305;Name=TTTY15
NA12877_chrY	CAT	exon	13262140	13262494	.	+	.	source_transcript=hg002_chrY_paternal_312.3;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.3,hg002_chrY_paternal_312.3;transcript_id=NA12877_ch_T0000305;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000305;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000305:0;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13262495	13286303	.	+	.	source_transcript=hg002_chrY_paternal_312.3;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.3,hg002_chrY_paternal_312.3;transcript_id=NA12877_ch_T0000305;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000305;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:NA12877_ch_T0000305:0;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13286304	13286397	.	+	.	source_transcript=hg002_chrY_paternal_312.3;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.3,hg002_chrY_paternal_312.3;transcript_id=NA12877_ch_T0000305;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000305;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000305:1;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13286398	13287475	.	+	.	source_transcript=hg002_chrY_paternal_312.3;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.3,hg002_chrY_paternal_312.3;transcript_id=NA12877_ch_T0000305;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000305;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:NA12877_ch_T0000305:1;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13287476	13292024	.	+	.	source_transcript=hg002_chrY_paternal_312.3;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.3,hg002_chrY_paternal_312.3;transcript_id=NA12877_ch_T0000305;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000305;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000305:2;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13262140	13292024	1000	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=NA12877_ch_T0000306;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_G0000142;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=NA12877_ch_T0000306;Name=TTTY15
NA12877_chrY	CAT	exon	13262140	13262494	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=NA12877_ch_T0000306;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000306;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000306:0;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13262495	13264427	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=NA12877_ch_T0000306;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000306;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:NA12877_ch_T0000306:0;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13264428	13264474	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=NA12877_ch_T0000306;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000306;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000306:1;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13264475	13286303	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=NA12877_ch_T0000306;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000306;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:NA12877_ch_T0000306:1;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13286304	13286397	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=NA12877_ch_T0000306;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000306;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000306:2;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13286398	13287475	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=NA12877_ch_T0000306;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000306;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:NA12877_ch_T0000306:2;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13287476	13292024	.	+	.	source_transcript=hg002_chrY_paternal_312.4;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.4,hg002_chrY_paternal_312.4;transcript_id=NA12877_ch_T0000306;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000306;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000306:3;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13262140	13292024	1000	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=NA12877_ch_T0000307;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_G0000142;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=NA12877_ch_T0000307;Name=TTTY15
NA12877_chrY	CAT	exon	13262140	13262494	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=NA12877_ch_T0000307;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000307;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000307:0;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13262495	13264427	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=NA12877_ch_T0000307;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000307;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:NA12877_ch_T0000307:0;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13264428	13264474	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=NA12877_ch_T0000307;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000307;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000307:1;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13264475	13286303	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=NA12877_ch_T0000307;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000307;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:NA12877_ch_T0000307:1;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13286304	13286397	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=NA12877_ch_T0000307;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000307;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000307:2;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13286398	13290116	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=NA12877_ch_T0000307;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000307;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=intron:NA12877_ch_T0000307:2;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13290117	13292024	.	+	.	source_transcript=hg002_chrY_paternal_312.5;source_transcript_name=hg002_chrY_paternal_312.1;source_gene=hg002_chrY_paternal_312;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_312;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_312.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_312.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY15;alternative_source_transcripts=hg002_chrY_paternal_312.5,hg002_chrY_paternal_312.5;transcript_id=NA12877_ch_T0000307;gene_id=NA12877_ch_G0000142;Parent=NA12877_ch_T0000307;transcript_name=hg002_chrY_paternal_312.1;gene_name=TTTY15;ID=exon:NA12877_ch_T0000307:3;Name=TTTY15;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	13301022	13460632	.	+	.	source_gene_common_name=USP9Y;source_gene=hg002_chrY_paternal_313;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;gene_id=NA12877_ch_G0000143;gene_biotype=protein_coding;gene_name=USP9Y;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000143;Name=USP9Y
NA12877_chrY	CAT	transcript	13301022	13460632	100	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_G0000143;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=NA12877_ch_T0000308;Name=USP9Y
NA12877_chrY	CAT	exon	13301022	13301846	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:0;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13301847	13308424	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:0;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13308425	13308484	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:1;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13308485	13309178	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:1;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13309179	13309334	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:2;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13309239	13309334	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:0;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	13309239	13309241	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=start_codon:NA12877_ch_T0000308;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13309335	13320379	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:2;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13320380	13320528	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:3;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13320380	13320528	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:1;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13320529	13321898	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:3;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13321899	13321978	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:4;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13321899	13321978	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:2;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13321979	13324903	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:4;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13324904	13325016	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:5;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13324904	13325016	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:3;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13325017	13326365	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:5;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13326366	13326584	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:6;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13326366	13326584	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:4;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13326585	13335402	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:6;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13335403	13335518	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:7;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13335403	13335518	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:5;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13335519	13335788	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:7;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13335789	13336040	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:8;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13335789	13336040	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:6;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13336041	13336201	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:8;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13336202	13336340	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:9;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13336202	13336340	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:7;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13336341	13337947	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:9;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13337948	13338100	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:10;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13337948	13338100	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:8;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13338101	13339315	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:10;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13339316	13339420	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:11;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13339316	13339420	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:9;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13339421	13356982	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:11;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13356983	13357189	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:12;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13356983	13357189	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:10;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13357190	13358296	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:12;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13358297	13358433	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:13;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13358297	13358433	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:11;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13358434	13360274	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:13;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13360275	13360408	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:14;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13360275	13360408	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:12;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13360409	13370858	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:14;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13370859	13370946	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:15;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13370859	13370946	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:13;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13370947	13373373	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:15;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13373374	13373716	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:16;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13373374	13373716	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:14;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13373717	13375261	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:16;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13375262	13375357	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:17;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13375262	13375357	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:15;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13375358	13376439	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:17;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13376440	13376651	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:18;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13376440	13376651	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:16;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13376652	13377809	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:18;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13377810	13378050	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:19;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13377810	13378050	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:17;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13378051	13378396	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:19;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13378397	13378546	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:20;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13378397	13378546	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:18;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13378547	13379316	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:20;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13379317	13379437	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:21;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13379317	13379437	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:19;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13379438	13385993	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:21;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13385994	13386124	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:22;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13385994	13386124	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:20;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13386125	13386312	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:22;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13386313	13386591	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:23;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13386313	13386591	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:21;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13386592	13390197	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:23;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13390198	13390323	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:24;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13390198	13390323	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:22;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13390324	13391289	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:24;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13391290	13391415	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:25;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13391290	13391415	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:23;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13391416	13392822	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:25;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13392823	13392992	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:26;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13392823	13392992	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:24;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13392993	13409970	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:26;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13409971	13410079	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:27;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13409971	13410079	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:25;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13410080	13410463	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:27;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13410464	13410610	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:28;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13410464	13410610	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:26;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13410611	13411426	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:28;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13411427	13411573	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:29;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13411427	13411573	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:27;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13411574	13412621	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:29;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13412622	13412844	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:30;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13412622	13412844	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:28;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13412845	13415915	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:30;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13415916	13416136	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:31;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13415916	13416136	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:29;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13416137	13418211	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:31;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13418212	13418402	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:32;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13418212	13418402	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:30;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13418403	13433480	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:32;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13433481	13433654	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:33;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13433481	13433654	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:31;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13433655	13437703	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:33;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13437704	13437845	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:34;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13437704	13437845	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:32;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13437846	13439656	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:34;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13439657	13440407	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:35;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13439657	13440407	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:33;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13440408	13440802	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:35;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13440803	13440926	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:36;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13440803	13440926	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:34;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13440927	13442032	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:36;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13442033	13442258	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:37;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13442033	13442258	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:35;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13442259	13442856	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:37;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13442857	13442986	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:38;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13442857	13442986	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:36;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13442987	13446125	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:38;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13446126	13446311	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:39;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13446126	13446311	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:37;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13446312	13446725	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:39;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13446726	13446946	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:40;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13446726	13446946	.	+	2	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:38;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13446947	13447031	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:40;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13447032	13447120	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:41;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13447032	13447120	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:39;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13447121	13456132	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:41;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13456133	13456289	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:42;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13456133	13456289	.	+	1	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:40;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13456290	13456425	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:42;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13456426	13456638	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:43;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13456426	13456638	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:41;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13456639	13457358	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:43;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13457359	13457454	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:44;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13457359	13457454	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:42;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13457455	13459071	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000308:44;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13459072	13460632	.	+	.	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000308:45;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13459072	13459209	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000308:43;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	13459207	13459209	.	+	0	source_transcript=hg002_chrY_paternal_313.1;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.1,hg002_chrY_paternal_313.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000308;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000308;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=stop_codon:NA12877_ch_T0000308;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13307644	13460632	100	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_G0000143;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=NA12877_ch_T0000309;Name=USP9Y
NA12877_chrY	CAT	exon	13307644	13307672	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:0;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13307673	13308424	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:0;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13308425	13308484	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:1;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13308485	13309178	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:1;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13309179	13309334	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:2;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13309239	13309334	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:0;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	13309239	13309241	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=start_codon:NA12877_ch_T0000309;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13309335	13320379	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:2;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13320380	13320528	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:3;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13320380	13320528	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:1;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13320529	13321898	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:3;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13321899	13321978	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:4;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13321899	13321978	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:2;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13321979	13324903	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:4;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13324904	13325016	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:5;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13324904	13325016	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:3;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13325017	13326365	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:5;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13326366	13326584	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:6;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13326366	13326584	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:4;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13326585	13335402	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:6;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13335403	13335518	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:7;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13335403	13335518	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:5;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13335519	13335788	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:7;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13335789	13336040	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:8;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13335789	13336040	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:6;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13336041	13336201	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:8;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13336202	13336340	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:9;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13336202	13336340	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:7;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13336341	13337947	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:9;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13337948	13338100	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:10;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13337948	13338100	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:8;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13338101	13339315	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:10;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13339316	13339420	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:11;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13339316	13339420	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:9;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13339421	13356982	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:11;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13356983	13357189	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:12;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13356983	13357189	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:10;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13357190	13358296	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:12;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13358297	13358433	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:13;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13358297	13358433	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:11;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13358434	13360274	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:13;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13360275	13360408	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:14;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13360275	13360408	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:12;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13360409	13370858	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:14;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13370859	13370946	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:15;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13370859	13370946	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:13;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13370947	13373373	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:15;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13373374	13373716	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:16;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13373374	13373716	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:14;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13373717	13375261	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:16;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13375262	13375357	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:17;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13375262	13375357	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:15;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13375358	13376439	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:17;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13376440	13376651	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:18;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13376440	13376651	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:16;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13376652	13377809	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:18;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13377810	13378050	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:19;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13377810	13378050	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:17;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13378051	13378396	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:19;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13378397	13378546	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:20;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13378397	13378546	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:18;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13378547	13379316	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:20;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13379317	13379437	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:21;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13379317	13379437	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:19;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13379438	13385993	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:21;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13385994	13386124	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:22;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13385994	13386124	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:20;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13386125	13386312	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:22;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13386313	13386591	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:23;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13386313	13386591	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:21;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13386592	13390197	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:23;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13390198	13390323	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:24;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13390198	13390323	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:22;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13390324	13391289	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:24;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13391290	13391415	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:25;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13391290	13391415	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:23;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13391416	13392822	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:25;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13392823	13392992	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:26;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13392823	13392992	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:24;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13392993	13409970	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:26;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13409971	13410079	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:27;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13409971	13410079	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:25;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13410080	13410463	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:27;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13410464	13410610	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:28;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13410464	13410610	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:26;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13410611	13411426	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:28;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13411427	13411573	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:29;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13411427	13411573	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:27;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13411574	13412621	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:29;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13412622	13412844	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:30;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13412622	13412844	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:28;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13412845	13415915	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:30;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13415916	13416136	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:31;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13415916	13416136	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:29;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13416137	13418211	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:31;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13418212	13418402	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:32;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13418212	13418402	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:30;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13418403	13433480	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:32;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13433481	13433654	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:33;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13433481	13433654	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:31;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13433655	13437703	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:33;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13437704	13437845	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:34;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13437704	13437845	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:32;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13437846	13439656	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:34;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13439657	13440407	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:35;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13439657	13440407	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:33;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13440408	13440802	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:35;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13440803	13440926	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:36;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13440803	13440926	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:34;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13440927	13442032	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:36;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13442033	13442258	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:37;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13442033	13442258	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:35;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13442259	13442856	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:37;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13442857	13442986	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:38;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13442857	13442986	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:36;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13442987	13446125	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:38;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13446126	13446311	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:39;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13446126	13446311	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:37;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13446312	13446725	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:39;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13446726	13446946	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:40;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13446726	13446946	.	+	2	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:38;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13446947	13447031	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:40;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13447032	13447120	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:41;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13447032	13447120	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:39;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13447121	13456132	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:41;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13456133	13456289	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:42;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13456133	13456289	.	+	1	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:40;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13456290	13456425	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:42;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13456426	13456638	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:43;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13456426	13456638	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:41;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13456639	13457358	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:43;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13457359	13457454	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:44;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13457359	13457454	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:42;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13457455	13459071	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000309:44;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13459072	13460632	.	+	.	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000309:45;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13459072	13459209	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000309:43;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	13459207	13459209	.	+	0	source_transcript=hg002_chrY_paternal_313.2;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.2,hg002_chrY_paternal_313.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000309;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000309;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=stop_codon:NA12877_ch_T0000309;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13309247	13460632	100	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_G0000143;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=NA12877_ch_T0000310;Name=USP9Y
NA12877_chrY	CAT	exon	13309247	13309334	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:0;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13309335	13314429	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:0;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13314430	13314580	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:1;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13314581	13320379	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:1;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13320380	13320528	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:2;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13320518	13320528	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:0;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	13320518	13320520	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=start_codon:NA12877_ch_T0000310;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13320529	13321898	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:2;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13321899	13321978	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:3;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13321899	13321978	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:1;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13321979	13324903	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:3;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13324904	13325016	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:4;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13324904	13325016	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:2;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13325017	13326365	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:4;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13326366	13326584	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:5;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13326366	13326584	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:3;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13326585	13335402	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:5;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13335403	13335518	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:6;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13335403	13335518	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:4;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13335519	13335788	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:6;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13335789	13336040	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:7;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13335789	13336040	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:5;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13336041	13336201	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:7;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13336202	13336340	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:8;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13336202	13336340	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:6;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13336341	13337947	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:8;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13337948	13338100	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:9;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13337948	13338100	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:7;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13338101	13339315	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:9;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13339316	13339420	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:10;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13339316	13339420	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:8;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13339421	13356982	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:10;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13356983	13357189	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:11;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13356983	13357189	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:9;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13357190	13358296	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:11;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13358297	13358433	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:12;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13358297	13358433	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:10;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13358434	13360274	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:12;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13360275	13360408	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:13;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13360275	13360408	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:11;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13360409	13370858	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:13;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13370859	13370946	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:14;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13370859	13370946	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:12;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13370947	13373373	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:14;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13373374	13373716	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:15;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13373374	13373716	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:13;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13373717	13375261	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:15;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13375262	13375357	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:16;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13375262	13375357	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:14;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13375358	13376439	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:16;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13376440	13376651	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:17;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13376440	13376651	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:15;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13376652	13377809	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:17;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13377810	13378050	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:18;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13377810	13378050	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:16;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13378051	13378396	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:18;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13378397	13378546	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:19;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13378397	13378546	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:17;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13378547	13379316	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:19;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13379317	13379437	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:20;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13379317	13379437	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:18;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13379438	13385993	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:20;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13385994	13386124	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:21;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13385994	13386124	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:19;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13386125	13386312	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:21;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13386313	13386591	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:22;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13386313	13386591	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:20;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13386592	13390197	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:22;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13390198	13390323	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:23;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13390198	13390323	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:21;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13390324	13391289	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:23;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13391290	13391415	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:24;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13391290	13391415	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:22;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13391416	13392822	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:24;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13392823	13392992	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:25;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13392823	13392992	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:23;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13392993	13409970	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:25;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13409971	13410079	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:26;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13409971	13410079	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:24;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13410080	13410463	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:26;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13410464	13410610	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:27;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13410464	13410610	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:25;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13410611	13411426	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:27;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13411427	13411573	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:28;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13411427	13411573	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:26;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13411574	13412621	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:28;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13412622	13412844	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:29;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13412622	13412844	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:27;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13412845	13415915	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:29;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13415916	13416136	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:30;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13415916	13416136	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:28;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13416137	13418211	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:30;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13418212	13418402	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:31;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13418212	13418402	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:29;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13418403	13433480	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:31;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13433481	13433654	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:32;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13433481	13433654	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:30;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13433655	13437703	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:32;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13437704	13437845	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:33;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13437704	13437845	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:31;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13437846	13439656	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:33;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13439657	13440407	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:34;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13439657	13440407	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:32;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13440408	13440802	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:34;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13440803	13440926	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:35;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13440803	13440926	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:33;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13440927	13442032	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:35;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13442033	13442258	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:36;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13442033	13442258	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:34;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13442259	13442856	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:36;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13442857	13442986	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:37;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13442857	13442986	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:35;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13442987	13446125	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:37;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13446126	13446311	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:38;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13446126	13446311	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:36;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13446312	13446725	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:38;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13446726	13446946	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:39;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13446726	13446946	.	+	2	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:37;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13446947	13447031	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:39;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13447032	13447120	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:40;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13447032	13447120	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:38;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13447121	13456132	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:40;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13456133	13456289	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:41;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13456133	13456289	.	+	1	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:39;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13456290	13456425	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:41;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13456426	13456638	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:42;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13456426	13456638	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:40;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13456639	13457358	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:42;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13457359	13457454	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:43;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13457359	13457454	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:41;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13457455	13459071	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=intron:NA12877_ch_T0000310:43;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13459072	13460632	.	+	.	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=exon:NA12877_ch_T0000310:44;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13459072	13459209	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=CDS:NA12877_ch_T0000310:42;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	13459207	13459209	.	+	0	source_transcript=hg002_chrY_paternal_313.3;source_transcript_name=hg002_chrY_paternal_313.3;source_gene=hg002_chrY_paternal_313;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_313;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_313.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_313.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=hg002_chrY_paternal_313.3,hg002_chrY_paternal_313.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000310;gene_id=NA12877_ch_G0000143;Parent=NA12877_ch_T0000310;transcript_name=hg002_chrY_paternal_313.3;gene_name=USP9Y;ID=stop_codon:NA12877_ch_T0000310;Name=USP9Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	13504659	13520269	.	+	.	source_gene_common_name=DDX3Y;source_gene=hg002_chrY_paternal_315;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;gene_id=NA12877_ch_G0000144;gene_biotype=protein_coding;gene_name=DDX3Y;gene_sources=liftoff,augTM,transMap;ID=NA12877_ch_G0000144;Name=DDX3Y
NA12877_chrY	CAT	transcript	13504659	13520269	1000	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_G0000144;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=NA12877_ch_T0000311;Name=DDX3Y
NA12877_chrY	CAT	exon	13504659	13504772	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000311:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13504773	13507327	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000311:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13507328	13507385	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000311:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13507386	13509150	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000311:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13509151	13509198	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000311:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13509199	13511629	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000311:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13511630	13511759	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000311:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13511760	13512517	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000311:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13512518	13512853	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000311:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13512854	13513508	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000311:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13513509	13513644	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000311:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13513645	13514354	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000311:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514355	13515018	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000311:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515019	13515420	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000311:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515421	13515565	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000311:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515566	13515673	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000311:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515674	13515818	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000311:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515819	13516051	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000311:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516052	13516425	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000311:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516426	13516697	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000311:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516698	13516851	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000311:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516852	13517193	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000311:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517194	13517333	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000311:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13517334	13517833	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000311:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517834	13520269	.	+	.	source_transcript=hg002_chrY_paternal_315.10;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.10;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.10;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.4,hg002_chrY_paternal_315.10,hg002_chrY_paternal_315.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000311;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000311;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000311:12;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13504659	13520269	1000	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_G0000144;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=NA12877_ch_T0000312;Name=DDX3Y
NA12877_chrY	CAT	exon	13504659	13504772	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13504773	13507327	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13507328	13507385	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13507386	13509150	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13509151	13509198	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13509199	13511629	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13511630	13511759	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13511760	13512517	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13512518	13512853	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13512854	13513508	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13513509	13513644	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13513645	13514354	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514355	13514440	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13514441	13514674	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514675	13514773	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13514774	13514857	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514858	13515018	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515019	13515420	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515421	13515565	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515566	13515673	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515674	13515818	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515819	13516051	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516052	13516425	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516426	13516697	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516698	13516851	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:12;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516852	13517193	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:12;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517194	13517333	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:13;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13517334	13517833	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000312:13;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517834	13520269	.	+	.	source_transcript=hg002_chrY_paternal_315.11;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.11;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.11;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.11;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000312;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000312;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000312:14;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13504659	13520269	1000	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_G0000144;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=NA12877_ch_T0000313;Name=DDX3Y
NA12877_chrY	CAT	exon	13504659	13504772	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000313:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13504773	13507327	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000313:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13507328	13507385	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000313:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13507386	13509150	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000313:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13509151	13509198	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000313:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13509199	13512517	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000313:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13512518	13512853	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000313:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13512854	13513508	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000313:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13513509	13513644	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000313:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13513645	13514354	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000313:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514355	13515018	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000313:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515019	13515420	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000313:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515421	13515565	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000313:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515566	13515673	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000313:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515674	13515818	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000313:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515819	13516051	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000313:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516052	13516425	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000313:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516426	13516697	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000313:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516698	13516851	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000313:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516852	13517193	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000313:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517194	13517333	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000313:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13517334	13517833	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000313:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517834	13520269	.	+	.	source_transcript=hg002_chrY_paternal_315.5;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.5;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.5;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000313;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000313;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000313:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13504659	13520269	1000	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_G0000144;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=NA12877_ch_T0000314;Name=DDX3Y
NA12877_chrY	CAT	exon	13504659	13504772	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000314:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13504773	13507327	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000314:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13507328	13507385	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000314:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13507386	13509150	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000314:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13509151	13509198	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000314:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13509199	13511629	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000314:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13511630	13511759	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000314:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13511760	13512517	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000314:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13512518	13512853	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000314:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13512854	13513508	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000314:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13513509	13513644	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000314:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13513645	13514354	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000314:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514355	13515018	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000314:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515019	13515420	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000314:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515421	13515565	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000314:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515566	13515673	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000314:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515674	13515818	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000314:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515819	13516051	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000314:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516052	13516425	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000314:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516426	13516766	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000314:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516767	13516851	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000314:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516852	13517193	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000314:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517194	13517333	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000314:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13517334	13517833	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000314:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517834	13520269	.	+	.	source_transcript=hg002_chrY_paternal_315.6;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.6;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.6;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000314;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000314;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000314:12;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13504659	13520269	1000	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_G0000144;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=NA12877_ch_T0000315;Name=DDX3Y
NA12877_chrY	CAT	exon	13504659	13504772	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13504773	13507327	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13507328	13507385	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13507386	13509150	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13509151	13509198	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13509199	13511629	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13511630	13511759	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13511760	13512517	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13512518	13512853	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13512854	13513508	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13513509	13513644	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13513645	13514354	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514355	13514440	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13514441	13514674	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514675	13514773	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13514774	13514874	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514875	13515018	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515019	13515420	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515421	13515565	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515566	13515673	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515674	13515818	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515819	13516051	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516052	13516425	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516426	13516697	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516698	13516851	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:12;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516852	13517193	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:12;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517194	13517333	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:13;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13517334	13517833	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000315:13;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517834	13520269	.	+	.	source_transcript=hg002_chrY_paternal_315.7;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.7;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.7;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000315;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000315;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000315:14;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13505496	13520269	1000	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_G0000144;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=NA12877_ch_T0000316;Name=DDX3Y
NA12877_chrY	CAT	exon	13505496	13505606	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13505607	13507327	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13507328	13507385	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13507386	13509150	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13509151	13509198	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13509199	13511629	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13511630	13511759	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13511760	13512517	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13512518	13512853	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13512854	13513508	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13513509	13513644	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13513645	13514354	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514355	13514440	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13514441	13514674	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514675	13514773	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13514774	13514857	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514858	13515018	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515019	13515420	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515421	13515565	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515566	13515673	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515674	13515818	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515819	13516051	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516052	13516425	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516426	13516697	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516698	13516851	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:12;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516852	13517193	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:12;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517194	13517333	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:13;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13517334	13517833	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000316:13;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517834	13520269	.	+	.	source_transcript=hg002_chrY_paternal_315.12;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.12;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.12;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.12;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000316;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000316;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000316:14;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13505496	13520269	1000	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_G0000144;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=NA12877_ch_T0000317;Name=DDX3Y
NA12877_chrY	CAT	exon	13505496	13505606	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000317:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13505607	13507327	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000317:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13507328	13507385	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000317:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13507386	13509150	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000317:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13509151	13509198	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000317:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13509199	13511629	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000317:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13511630	13511759	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000317:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13511760	13512517	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000317:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13512518	13512853	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000317:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13512854	13513508	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000317:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13513509	13513644	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000317:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13513645	13514354	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000317:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514355	13515018	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000317:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515019	13515420	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000317:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515421	13515565	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000317:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515566	13515673	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000317:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515674	13515818	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000317:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515819	13516051	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000317:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516052	13516425	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000317:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516426	13516697	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000317:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516698	13516851	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000317:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516852	13517193	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000317:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517194	13517333	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000317:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13517334	13517833	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000317:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517834	13520269	.	+	.	source_transcript=hg002_chrY_paternal_315.13;source_transcript_name=hg002_chrY_paternal_315.1;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_315.13;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.13;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.14,hg002_chrY_paternal_315.13,hg002_chrY_paternal_315.14;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000317;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000317;transcript_name=hg002_chrY_paternal_315.1;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000317:12;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13507360	13520269	9960	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_G0000144;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=NA12877_ch_T0000318;Name=DDX3Y
NA12877_chrY	CAT	exon	13507360	13507385	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13507386	13509150	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000318:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13509151	13509198	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13509199	13512517	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000318:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13512518	13512853	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13512854	13513508	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000318:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13513509	13513644	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13513524	13513644	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:NA12877_ch_T0000318:0;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	13513524	13513526	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=start_codon:NA12877_ch_T0000318;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13513645	13514354	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000318:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514355	13514440	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13514355	13514440	.	+	2	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:NA12877_ch_T0000318:1;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13514441	13514674	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000318:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514675	13514773	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13514675	13514773	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:NA12877_ch_T0000318:2;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13514774	13514857	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000318:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13514858	13515018	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13514858	13515018	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:NA12877_ch_T0000318:3;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515019	13515420	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000318:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515421	13515565	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13515421	13515565	.	+	1	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:NA12877_ch_T0000318:4;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515566	13515673	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000318:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13515674	13515818	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13515674	13515818	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:NA12877_ch_T0000318:5;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13515819	13516051	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000318:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516052	13516233	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13516052	13516233	.	+	2	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:NA12877_ch_T0000318:6;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516234	13516307	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000318:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516308	13516425	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13516308	13516425	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:NA12877_ch_T0000318:7;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516426	13516697	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000318:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13516698	13516851	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13516698	13516851	.	+	2	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:NA12877_ch_T0000318:8;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13516852	13517193	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000318:11;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517194	13517333	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:12;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13517194	13517333	.	+	1	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:NA12877_ch_T0000318:9;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13517334	13517833	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=intron:NA12877_ch_T0000318:12;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13517834	13520269	.	+	.	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=exon:NA12877_ch_T0000318:13;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	13517834	13517913	.	+	2	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=CDS:NA12877_ch_T0000318:10;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	13517911	13517913	.	+	0	source_transcript=hg002_chrY_paternal_315.17;source_transcript_name=hg002_chrY_paternal_315.17;source_gene=hg002_chrY_paternal_315;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_315;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_315.17;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_315.17;transcript_score=292.8571428571429;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=hg002_chrY_paternal_315.17;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000318;gene_id=NA12877_ch_G0000144;Parent=NA12877_ch_T0000318;transcript_name=hg002_chrY_paternal_315.17;gene_name=DDX3Y;ID=stop_codon:NA12877_ch_T0000318;Name=DDX3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	13711116	13725432	.	+	.	source_gene_common_name=LOC112268312;source_gene=hg002_chrY_paternal_318;alternative_source_transcripts=hg002_chrY_paternal_318.1;gene_id=NA12877_ch_G0000145;gene_biotype=lncRNA;gene_name=LOC112268312;gene_sources=transMap;ID=NA12877_ch_G0000145;Name=LOC112268312
NA12877_chrY	CAT	transcript	13711116	13718699	1000	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=291.867;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.1;transcript_id=NA12877_ch_T0000319;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_G0000145;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=NA12877_ch_T0000319;Name=LOC112268312
NA12877_chrY	CAT	exon	13711116	13711204	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=291.867;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.1;transcript_id=NA12877_ch_T0000319;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000319;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000319:0;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13711205	13711390	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=291.867;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.1;transcript_id=NA12877_ch_T0000319;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000319;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:NA12877_ch_T0000319:0;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13711391	13711553	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=291.867;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.1;transcript_id=NA12877_ch_T0000319;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000319;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000319:1;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13711554	13717500	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=291.867;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.1;transcript_id=NA12877_ch_T0000319;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000319;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:NA12877_ch_T0000319:1;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13717501	13718699	.	+	.	source_transcript=hg002_chrY_paternal_318.1;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.1;transcript_score=291.867;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.1;transcript_id=NA12877_ch_T0000319;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000319;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000319:2;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13711116	13725432	1000	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=298.543;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2;transcript_id=NA12877_ch_T0000320;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_G0000145;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=NA12877_ch_T0000320;Name=LOC112268312
NA12877_chrY	CAT	exon	13711116	13711204	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=298.543;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2;transcript_id=NA12877_ch_T0000320;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000320;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000320:0;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13711205	13711390	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=298.543;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2;transcript_id=NA12877_ch_T0000320;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000320;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:NA12877_ch_T0000320:0;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13711391	13711553	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=298.543;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2;transcript_id=NA12877_ch_T0000320;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000320;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000320:1;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13711554	13717500	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=298.543;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2;transcript_id=NA12877_ch_T0000320;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000320;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:NA12877_ch_T0000320:1;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13717501	13717637	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=298.543;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2;transcript_id=NA12877_ch_T0000320;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000320;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000320:2;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13717638	13725065	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=298.543;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2;transcript_id=NA12877_ch_T0000320;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000320;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:NA12877_ch_T0000320:2;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13725066	13725432	.	+	.	source_transcript=hg002_chrY_paternal_318.2;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.2;transcript_score=298.543;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.2;transcript_id=NA12877_ch_T0000320;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000320;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000320:3;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13711238	13718699	1000	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=291.456;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.3;transcript_id=NA12877_ch_T0000321;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_G0000145;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=NA12877_ch_T0000321;Name=LOC112268312
NA12877_chrY	CAT	exon	13711238	13711256	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=291.456;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.3;transcript_id=NA12877_ch_T0000321;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000321;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000321:0;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13711257	13711390	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=291.456;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.3;transcript_id=NA12877_ch_T0000321;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000321;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:NA12877_ch_T0000321:0;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13711391	13711553	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=291.456;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.3;transcript_id=NA12877_ch_T0000321;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000321;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000321:1;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13711554	13717500	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=291.456;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.3;transcript_id=NA12877_ch_T0000321;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000321;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=intron:NA12877_ch_T0000321:1;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13717501	13718699	.	+	.	source_transcript=hg002_chrY_paternal_318.3;source_transcript_name=hg002_chrY_paternal_318.1;source_gene=hg002_chrY_paternal_318;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_318;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_318.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_318.3;transcript_score=291.456;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC112268312;alternative_source_transcripts=hg002_chrY_paternal_318.3;transcript_id=NA12877_ch_T0000321;gene_id=NA12877_ch_G0000145;Parent=NA12877_ch_T0000321;transcript_name=hg002_chrY_paternal_318.1;gene_name=LOC112268312;ID=exon:NA12877_ch_T0000321:2;Name=LOC112268312;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	13833689	14080461	.	-	.	source_gene_common_name=UTY;source_gene=hg002_chrY_paternal_321;alternative_source_transcripts=hg002_chrY_paternal_321.4;gene_id=NA12877_ch_G0000146;gene_biotype=protein_coding;gene_name=UTY;gene_sources=liftoff,augTM,transMap;ID=NA12877_ch_G0000146;Name=UTY
NA12877_chrY	CAT	transcript	13833689	14079824	1000	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000322;Name=UTY
NA12877_chrY	CAT	exon	13833689	13834620	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13834621	13850795	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850796	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958413	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958414	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000322:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14079824	.	-	.	source_transcript=hg002_chrY_paternal_321.4;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.4;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000322;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000322;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000322:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000323;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000323:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.41;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.41;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.41;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.41;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000323;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000323;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000323:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000324;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14003577	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14003578	14003683	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14003684	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000324:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.42;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.42;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.42;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.42;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000324;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000324;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000324:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000325;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905446	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905447	13905514	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905515	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969054	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969055	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14003577	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14003578	14003683	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14003684	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:28;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000325:28;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.43;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.43;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.43;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.43;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000325;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000325;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000325:29;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000326;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850795	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850796	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13934011	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13934012	13934134	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13934135	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000326:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.44;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.44;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.44;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.44;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000326;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000326;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000326:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000327;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13955168	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955169	13955322	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955323	13955431	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955432	13955497	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955498	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000327:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.45;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.45;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.45;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.45;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000327;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000327;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000327:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000328;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13935594	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13935595	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000328:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.46;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.46;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.46;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.46;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000328;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000328;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000328:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000329;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000329:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.47;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.47;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.47;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.47;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000329;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000329;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000329:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000330;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14075693	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14075694	14075816	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14075817	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000330:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.48;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.48;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.48;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.48;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000330;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000330;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000330:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000331;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13935594	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13935595	13955168	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955169	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000331:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.49;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.49;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.49;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.49;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000331;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000331;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000331:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000332;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13878034	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13878035	13878139	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13878140	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960274	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960275	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000332:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.50;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.50;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.50;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.50;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000332;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000332;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000332:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000333;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958104	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958105	13958240	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958241	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000333:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.51;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.51;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.51;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.51;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000333;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000333;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000333:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000334;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958104	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958105	13958315	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958316	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000334:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.52;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.52;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.52;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.52;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000334;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000334;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000334:28;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000335;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905446	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905447	13905514	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905515	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960274	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960275	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000335:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.53;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.53;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.53;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.53;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000335;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000335;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000335:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000336;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13955168	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955169	13955322	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955323	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000336:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.54;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.54;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.54;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.54;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000336;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000336;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000336:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000337;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905446	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905447	13905514	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905515	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000337:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.55;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.55;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.55;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.55;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000337;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000337;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000337:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000338;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000338:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.56;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.56;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.56;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.56;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000338;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000338;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000338:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000339;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958413	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958414	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000339:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.57;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.57;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.57;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.57;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000339;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000339;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000339:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000340;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958413	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958414	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000340:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.58;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.58;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.58;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.58;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000340;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000340;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000340:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000341;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13899794	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13899795	13899862	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13899863	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958347	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958348	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	13999732	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13999733	13999846	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13999847	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000341:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.59;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.59;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.59;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.59;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000341;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000341;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000341:28;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000342;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850795	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850796	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13899794	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13899795	13899862	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13899863	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958315	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958316	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000342:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.60;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.60;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.60;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.60;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000342;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000342;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000342:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000343;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905279	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905280	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	13999732	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13999733	13999846	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13999847	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000343:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.61;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.61;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.61;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.61;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000343;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000343;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000343:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000344;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13903975	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13903976	13904004	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13904005	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926136	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926137	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958413	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958414	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14003577	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14003578	14003683	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14003684	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000344:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.62;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.62;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.62;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.62;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000344;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000344;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000344:28;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000345;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13899770	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13899771	13899862	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13899863	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13954886	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13954887	13955168	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955169	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958413	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958414	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:28;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:28;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:29;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000345:29;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.63;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.63;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.63;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.63;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000345;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000345;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000345:30;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000346;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958315	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958316	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000346:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.64;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.64;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.64;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.64;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000346;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000346;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000346:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000347;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000347:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.65;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.65;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.65;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.65;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000347;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000347;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000347:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000348;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926136	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926137	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958413	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958414	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14003577	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14003578	14003683	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14003684	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000348:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.66;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.66;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.66;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.66;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000348;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000348;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000348:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000349;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958413	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958414	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000349:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.67;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.67;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.67;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.67;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000349;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000349;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000349:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000350;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850795	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850796	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13899794	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13899795	13899862	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13899863	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000350:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.68;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.68;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.68;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.68;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000350;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000350;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000350:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000351;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850795	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850796	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	13999732	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13999733	13999846	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13999847	14003577	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14003578	14003683	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14003684	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000351:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.69;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.69;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.69;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.69;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000351;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000351;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000351:28;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000352;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850795	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850796	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000352:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.70;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.70;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.70;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.70;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000352;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000352;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000352:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000353;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850795	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850796	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000353:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.71;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.71;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.71;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.71;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000353;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000353;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000353:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000354;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13935594	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13935595	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000354:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.72;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.72;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.72;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.72;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000354;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000354;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000354:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000355;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850795	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850796	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954579	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954580	13954627	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13954628	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000355:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.73;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.73;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.73;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.73;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000355;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000355;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000355:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000356;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13922895	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13922896	13923162	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923163	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000356:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.74;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.74;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.74;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.74;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000356;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000356;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000356:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000357;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13899770	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13899771	13899862	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13899863	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000357:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.76;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.76;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.76;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.76;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000357;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000357;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000357:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000358;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13899794	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13899795	13899862	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13899863	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13955168	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955169	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14039481	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14039482	14039561	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14039562	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000358:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.77;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.77;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.77;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.77;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000358;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000358;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000358:28;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000359;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13955168	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955169	13955322	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955323	13955431	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955432	13955497	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955498	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958347	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958348	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000359:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.78;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.78;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.78;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.78;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000359;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000359;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000359:28;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000360;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926136	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926137	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958413	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958414	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000360:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.79;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.79;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.79;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.79;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000360;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000360;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000360:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000361;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969054	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969055	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000361:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.80;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.80;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.80;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.80;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000361;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000361;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000361:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000362;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954579	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954580	13954627	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13954628	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958347	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958348	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000362:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.81;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.81;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.81;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.81;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000362;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000362;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000362:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000363;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850795	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850796	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958315	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958316	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000363:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.82;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.82;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.82;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.82;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000363;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000363;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000363:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000364;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969054	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969055	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14003577	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14003578	14003683	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14003684	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000364:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.83;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.83;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.83;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.83;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000364;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000364;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000364:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000365;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000365:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.84;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.84;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.84;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.84;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000365;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000365;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000365:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000366;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926136	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926137	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14003577	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14003578	14003683	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14003684	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000366:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.85;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.85;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.85;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.85;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000366;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000366;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000366:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000367;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905446	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905447	13905514	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905515	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000367:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.86;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.86;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.86;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.86;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000367;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000367;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000367:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000368;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13878034	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13878035	13878139	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13878140	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000368:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.87;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.87;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.87;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.87;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000368;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000368;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000368:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000369;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13935594	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13935595	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000369:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.88;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.88;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.88;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.88;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000369;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000369;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000369:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000370;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958315	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958316	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000370:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.89;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.89;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.89;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.89;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000370;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000370;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000370:28;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000371;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14003577	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14003578	14003683	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14003684	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000371:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.90;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.90;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.90;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.90;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000371;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000371;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000371:27;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000372;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000372:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.91;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.91;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.91;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.91;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000372;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000372;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000372:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13848173	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000373;Name=UTY
NA12877_chrY	CAT	exon	13848173	13849676	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13849677	13850810	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13850811	13850981	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13850982	13860071	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13860072	13860198	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13860199	13897500	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13897501	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959737	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959738	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000373:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.92;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.92;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.92;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.92;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000373;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000373;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000373:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13897303	14079824	1000	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000374;Name=UTY
NA12877_chrY	CAT	exon	13897303	13897642	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13897643	13898750	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13898751	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13899770	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13899771	13899862	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13899863	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000374:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14079824	.	-	.	source_transcript=hg002_chrY_paternal_321.106;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.106;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.106;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.106;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000374;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000374;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000374:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13898884	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000375;Name=UTY
NA12877_chrY	CAT	exon	13898884	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13899770	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13899771	13899862	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13899863	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954579	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954580	13954627	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13954628	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958413	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958414	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000375:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.110;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.110;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.110;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.110;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000375;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000375;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000375:26;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	13898920	14080461	1000	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_G0000146;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=NA12877_ch_T0000376;Name=UTY
NA12877_chrY	CAT	exon	13898920	13898938	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13898939	13899770	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:0;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13899771	13899862	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13899863	13902670	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:1;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13902671	13902785	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13902786	13905192	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:2;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905193	13905341	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13905342	13905831	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:3;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13905832	13906044	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13906045	13923348	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:4;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13923349	13923554	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13923555	13924394	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:5;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13924395	13924500	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13924501	13926014	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:6;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13926015	13926144	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13926145	13935356	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:7;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13935357	13936129	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13936130	13954796	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:8;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13954797	13955192	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955193	13955716	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:9;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13955717	13955812	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13955813	13957670	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:10;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13957671	13957763	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13957764	13958257	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:11;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958258	13958413	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13958414	13958881	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:12;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13958882	13959016	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959017	13959560	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:13;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13959561	13959780	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13959781	13960223	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:14;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13960224	13960322	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13960323	13966060	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:15;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13966061	13966187	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13966188	13969049	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:16;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13969050	13969143	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13969144	13993653	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:17;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13993654	13993688	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13993689	13996712	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:18;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	13996713	13996767	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	13996768	14010787	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:19;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14010788	14010908	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14010909	14014529	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:20;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14014530	14014588	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14014589	14048807	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:21;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14048808	14048857	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14048858	14069911	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:22;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14069912	14070020	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14070021	14079044	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:23;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079045	14079108	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14079109	14079304	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=intron:NA12877_ch_T0000376:24;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14079305	14080461	.	-	.	source_transcript=hg002_chrY_paternal_321.111;source_transcript_name=hg002_chrY_paternal_321.1;source_gene=hg002_chrY_paternal_321;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_321;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_321.111;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_321.111;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=hg002_chrY_paternal_321.111;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000376;gene_id=NA12877_ch_G0000146;Parent=NA12877_ch_T0000376;transcript_name=hg002_chrY_paternal_321.1;gene_name=UTY;ID=exon:NA12877_ch_T0000376:25;Name=UTY;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	14078968	14079005	.	+	.	source_gene_common_name=MIR12120;source_gene=hg002_chrY_paternal_323;alternative_source_transcripts=hg002_chrY_paternal_323.1,hg002_chrY_paternal_323.1;gene_id=NA12877_ch_G0000147;gene_biotype=miRNA;gene_name=MIR12120;gene_sources=liftoff;ID=NA12877_ch_G0000147;Name=MIR12120
NA12877_chrY	CAT	transcript	14078968	14079057	1000	+	.	source_transcript=hg002_chrY_paternal_323.1;source_transcript_name=hg002_chrY_paternal_323.1;source_gene=hg002_chrY_paternal_323;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_323;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_323.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_323.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR12120;alternative_source_transcripts=hg002_chrY_paternal_323.1,hg002_chrY_paternal_323.1;transcript_id=NA12877_ch_T0000377;gene_id=NA12877_ch_G0000147;Parent=NA12877_ch_G0000147;transcript_name=hg002_chrY_paternal_323.1;gene_name=MIR12120;ID=NA12877_ch_T0000377;Name=MIR12120
NA12877_chrY	CAT	exon	14078968	14079057	.	+	.	source_transcript=hg002_chrY_paternal_323.1;source_transcript_name=hg002_chrY_paternal_323.1;source_gene=hg002_chrY_paternal_323;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_323;gene_biotype=miRNA;transcript_biotype=primary_transcript;alignment_id=hg002_chrY_paternal_323.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_323.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR12120;alternative_source_transcripts=hg002_chrY_paternal_323.1,hg002_chrY_paternal_323.1;transcript_id=NA12877_ch_T0000377;gene_id=NA12877_ch_G0000147;Parent=NA12877_ch_T0000377;transcript_name=hg002_chrY_paternal_323.1;gene_name=MIR12120;ID=exon:NA12877_ch_T0000377:0;Name=MIR12120;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	14078980	14079005	1000	+	.	source_transcript=hg002_chrY_paternal_323.2;source_transcript_name=hg002_chrY_paternal_323.1;source_gene=hg002_chrY_paternal_323;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_323;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_323.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_323.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR12120;alternative_source_transcripts=hg002_chrY_paternal_323.2,hg002_chrY_paternal_323.2;transcript_id=NA12877_ch_T0000378;gene_id=NA12877_ch_G0000147;Parent=NA12877_ch_G0000147;transcript_name=hg002_chrY_paternal_323.1;gene_name=MIR12120;ID=NA12877_ch_T0000378;Name=MIR12120
NA12877_chrY	CAT	exon	14078980	14079005	.	+	.	source_transcript=hg002_chrY_paternal_323.2;source_transcript_name=hg002_chrY_paternal_323.1;source_gene=hg002_chrY_paternal_323;source_gene_biotype=miRNA;original_gene_id=hg002_chrY_paternal_323;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=hg002_chrY_paternal_323.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_323.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR12120;alternative_source_transcripts=hg002_chrY_paternal_323.2,hg002_chrY_paternal_323.2;transcript_id=NA12877_ch_T0000378;gene_id=NA12877_ch_G0000147;Parent=NA12877_ch_T0000378;transcript_name=hg002_chrY_paternal_323.1;gene_name=MIR12120;ID=exon:NA12877_ch_T0000378:0;Name=MIR12120;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	14303695	14305820	.	+	.	source_gene_common_name=TMSB4Y;source_gene=hg002_chrY_paternal_324;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;gene_id=NA12877_ch_G0000148;gene_biotype=protein_coding;gene_name=TMSB4Y;gene_sources=liftoff;ID=NA12877_ch_G0000148;Name=TMSB4Y
NA12877_chrY	CAT	transcript	14303695	14305820	100	+	.	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=NA12877_ch_T0000379;gene_id=NA12877_ch_G0000148;Parent=NA12877_ch_G0000148;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=NA12877_ch_T0000379;Name=TMSB4Y
NA12877_chrY	CAT	exon	14303695	14304231	.	+	.	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=NA12877_ch_T0000379;gene_id=NA12877_ch_G0000148;Parent=NA12877_ch_T0000379;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=exon:NA12877_ch_T0000379:0;Name=TMSB4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	14304132	14304231	.	+	0	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=NA12877_ch_T0000379;gene_id=NA12877_ch_G0000148;Parent=NA12877_ch_T0000379;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=CDS:NA12877_ch_T0000379:0;Name=TMSB4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	14304132	14304134	.	+	0	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=NA12877_ch_T0000379;gene_id=NA12877_ch_G0000148;Parent=NA12877_ch_T0000379;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=start_codon:NA12877_ch_T0000379;Name=TMSB4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14304232	14305020	.	+	.	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=NA12877_ch_T0000379;gene_id=NA12877_ch_G0000148;Parent=NA12877_ch_T0000379;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=intron:NA12877_ch_T0000379:0;Name=TMSB4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14305021	14305820	.	+	.	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=NA12877_ch_T0000379;gene_id=NA12877_ch_G0000148;Parent=NA12877_ch_T0000379;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=exon:NA12877_ch_T0000379:1;Name=TMSB4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	14305021	14305055	.	+	2	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=NA12877_ch_T0000379;gene_id=NA12877_ch_G0000148;Parent=NA12877_ch_T0000379;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=CDS:NA12877_ch_T0000379:1;Name=TMSB4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	14305053	14305055	.	+	0	source_transcript=hg002_chrY_paternal_324.1;source_transcript_name=hg002_chrY_paternal_324.1;source_gene=hg002_chrY_paternal_324;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_324;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_324.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_324.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=hg002_chrY_paternal_324.1,hg002_chrY_paternal_324.1;transcript_id=NA12877_ch_T0000379;gene_id=NA12877_ch_G0000148;Parent=NA12877_ch_T0000379;transcript_name=hg002_chrY_paternal_324.1;gene_name=TMSB4Y;ID=stop_codon:NA12877_ch_T0000379;Name=TMSB4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	14585576	14586277	.	-	.	source_gene_common_name=VCY;source_gene=hg002_chrY_paternal_327;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;gene_id=NA12877_ch_G0000149;gene_biotype=protein_coding;gene_name=VCY;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000149;Name=VCY
NA12877_chrY	CAT	transcript	14585576	14586277	100	-	.	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000380;gene_id=NA12877_ch_G0000149;Parent=NA12877_ch_G0000149;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=NA12877_ch_T0000380;Name=VCY
NA12877_chrY	CAT	exon	14585576	14585950	.	-	.	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000380;gene_id=NA12877_ch_G0000149;Parent=NA12877_ch_T0000380;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=exon:NA12877_ch_T0000380:0;Name=VCY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	14585675	14585950	.	-	0	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000380;gene_id=NA12877_ch_G0000149;Parent=NA12877_ch_T0000380;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=CDS:NA12877_ch_T0000380:0;Name=VCY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	14585675	14585677	.	-	0	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000380;gene_id=NA12877_ch_G0000149;Parent=NA12877_ch_T0000380;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=stop_codon:NA12877_ch_T0000380;Name=VCY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14585951	14586142	.	-	.	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000380;gene_id=NA12877_ch_G0000149;Parent=NA12877_ch_T0000380;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=intron:NA12877_ch_T0000380:0;Name=VCY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14586143	14586277	.	-	.	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000380;gene_id=NA12877_ch_G0000149;Parent=NA12877_ch_T0000380;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=exon:NA12877_ch_T0000380:1;Name=VCY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	14586143	14586244	.	-	0	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000380;gene_id=NA12877_ch_G0000149;Parent=NA12877_ch_T0000380;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=CDS:NA12877_ch_T0000380:1;Name=VCY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	14586242	14586244	.	-	0	source_transcript=hg002_chrY_paternal_327.1;source_transcript_name=hg002_chrY_paternal_327.1;source_gene=hg002_chrY_paternal_327;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_327;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_327.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_327.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=hg002_chrY_paternal_327.1,hg002_chrY_paternal_327.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000380;gene_id=NA12877_ch_G0000149;Parent=NA12877_ch_T0000380;transcript_name=hg002_chrY_paternal_327.1;gene_name=VCY;ID=start_codon:NA12877_ch_T0000380;Name=VCY;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	14656027	14656758	.	+	.	source_gene_common_name=VCY1B;source_gene=hg002_chrY_paternal_328;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;gene_id=NA12877_ch_G0000150;gene_biotype=protein_coding;gene_name=VCY1B;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000150;Name=VCY1B
NA12877_chrY	CAT	transcript	14656027	14656758	100	+	.	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000381;gene_id=NA12877_ch_G0000150;Parent=NA12877_ch_G0000150;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=NA12877_ch_T0000381;Name=VCY1B
NA12877_chrY	CAT	exon	14656027	14656191	.	+	.	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000381;gene_id=NA12877_ch_G0000150;Parent=NA12877_ch_T0000381;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=exon:NA12877_ch_T0000381:0;Name=VCY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	14656090	14656191	.	+	0	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000381;gene_id=NA12877_ch_G0000150;Parent=NA12877_ch_T0000381;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=CDS:NA12877_ch_T0000381:0;Name=VCY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	14656090	14656092	.	+	0	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000381;gene_id=NA12877_ch_G0000150;Parent=NA12877_ch_T0000381;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=start_codon:NA12877_ch_T0000381;Name=VCY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	14656192	14656383	.	+	.	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000381;gene_id=NA12877_ch_G0000150;Parent=NA12877_ch_T0000381;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=intron:NA12877_ch_T0000381:0;Name=VCY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	14656384	14656758	.	+	.	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000381;gene_id=NA12877_ch_G0000150;Parent=NA12877_ch_T0000381;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=exon:NA12877_ch_T0000381:1;Name=VCY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	14656384	14656659	.	+	0	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000381;gene_id=NA12877_ch_G0000150;Parent=NA12877_ch_T0000381;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=CDS:NA12877_ch_T0000381:1;Name=VCY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	14656657	14656659	.	+	0	source_transcript=hg002_chrY_paternal_328.1;source_transcript_name=hg002_chrY_paternal_328.1;source_gene=hg002_chrY_paternal_328;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_328;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_328.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_328.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=hg002_chrY_paternal_328.1,hg002_chrY_paternal_328.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000381;gene_id=NA12877_ch_G0000150;Parent=NA12877_ch_T0000381;transcript_name=hg002_chrY_paternal_328.1;gene_name=VCY1B;ID=stop_codon:NA12877_ch_T0000381;Name=VCY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	15122490	15445518	.	+	.	source_gene_common_name=NLGN4Y;source_gene=hg002_chrY_paternal_331;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;gene_id=NA12877_ch_G0000151;gene_biotype=protein_coding;gene_name=NLGN4Y;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000151;Name=NLGN4Y
NA12877_chrY	CAT	transcript	15122490	15333418	100	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000382;Name=NLGN4Y
NA12877_chrY	CAT	exon	15122490	15122815	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000382:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15122816	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000382:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000382:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000382:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000382;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000382:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000382:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000382:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000382:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000382:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000382:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15333320	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000382:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15333321	15333418	.	+	.	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000382:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15333321	15333406	.	+	2	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000382:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15333404	15333406	.	+	0	source_transcript=hg002_chrY_paternal_331.1;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.1,hg002_chrY_paternal_331.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000382;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000382;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000382;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15122490	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000383;Name=NLGN4Y
NA12877_chrY	CAT	exon	15122490	15122815	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000383:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15122816	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000383:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000383:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000383:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000383:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15323018	15323138	.	+	0	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000383:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15323018	15323020	.	+	0	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000383;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000383:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000383:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000383:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000383:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000383:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000383:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000383:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000383:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000383:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.2;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.2,hg002_chrY_paternal_331.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000383;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000383;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000383;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15122490	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000384;Name=NLGN4Y
NA12877_chrY	CAT	exon	15122490	15122815	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000384:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15122816	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000384:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000384:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000384:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000384;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000384:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000384:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000384:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000384:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000384:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000384:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000384:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000384:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000384:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000384:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000384:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000384:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000384:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000384:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000384:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.3;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.3,hg002_chrY_paternal_331.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000384;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000384;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000384;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15122490	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000385;Name=NLGN4Y
NA12877_chrY	CAT	exon	15122490	15122815	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000385:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15122816	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000385:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000385:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000385:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000385;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000385:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000385:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000385:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000385:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000385:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000385:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000385:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000385:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000385:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000385:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000385:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000385:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.4;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.4,hg002_chrY_paternal_331.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000385;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000385;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000385;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15122490	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000386;Name=NLGN4Y
NA12877_chrY	CAT	exon	15122490	15123446	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000386:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15123447	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000386:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000386:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000386:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000386;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000386:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000386:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000386:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000386:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000386:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000386:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000386:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000386:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000386:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000386:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000386:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000386:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000386:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000386:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000386:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.5;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.5,hg002_chrY_paternal_331.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000386;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000386;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000386;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15123620	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000387;Name=NLGN4Y
NA12877_chrY	CAT	exon	15123620	15123772	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000387:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15123773	15221893	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000387:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221894	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000387:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000387:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000387;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000387:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000387:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000387:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000387:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000387:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000387:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000387:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000387:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000387:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000387:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000387:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000387:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.6;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.6,hg002_chrY_paternal_331.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000387;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000387;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000387;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15123846	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000388;Name=NLGN4Y
NA12877_chrY	CAT	exon	15123846	15124158	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000388:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15124159	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000388:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000388:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000388:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000388;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000388:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000388:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000388:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000388:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000388:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000388:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000388:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000388:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000388:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000388:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000388:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000388:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000388:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000388:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000388:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.7;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.7,hg002_chrY_paternal_331.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000388;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000388;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000388;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15123846	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000389;Name=NLGN4Y
NA12877_chrY	CAT	exon	15123846	15124158	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000389:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15124159	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000389:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000389:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000389:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000389;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000389:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000389:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000389:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000389:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000389:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000389:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000389:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000389:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000389:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000389:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000389:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000389:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.8;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.8,hg002_chrY_paternal_331.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000389;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000389;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000389;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15124403	15333418	100	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000390;Name=NLGN4Y
NA12877_chrY	CAT	exon	15124403	15124810	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000390:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15124811	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000390:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000390:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000390:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000390;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000390:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000390:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000390:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000390:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000390:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000390:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15333320	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000390:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15333321	15333418	.	+	.	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000390:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15333321	15333406	.	+	2	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000390:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15333404	15333406	.	+	0	source_transcript=hg002_chrY_paternal_331.10;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.10,hg002_chrY_paternal_331.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000390;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000390;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000390;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15124403	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000391;Name=NLGN4Y
NA12877_chrY	CAT	exon	15124403	15124810	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000391:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15124811	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000391:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000391:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000391:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000391;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000391:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000391:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000391:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000391:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000391:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000391:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000391:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000391:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000391:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000391:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000391:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000391:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000391:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000391:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000391:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.11;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.11,hg002_chrY_paternal_331.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000391;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000391;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000391;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15124403	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000392;Name=NLGN4Y
NA12877_chrY	CAT	exon	15124403	15124582	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000392:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15124583	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000392:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000392:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000392:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000392;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000392:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000392:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000392:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000392:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000392:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000392:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000392:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000392:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000392:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000392:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000392:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000392:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000392:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000392:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000392:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.12;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.12,hg002_chrY_paternal_331.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000392;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000392;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000392;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15124403	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000393;Name=NLGN4Y
NA12877_chrY	CAT	exon	15124403	15124810	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000393:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15124811	15184046	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000393:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15184047	15184148	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000393:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15184149	15187482	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000393:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15187483	15187587	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000393:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15187588	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000393:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000393:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000393:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000393;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000393:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000393:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000393:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000393:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000393:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000393:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000393:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000393:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000393:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000393:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000393:7;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000393:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.13;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.13,hg002_chrY_paternal_331.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000393;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000393;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000393;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15124403	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000394;Name=NLGN4Y
NA12877_chrY	CAT	exon	15124403	15124582	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000394:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15124583	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000394:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000394:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000394:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000394;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000394:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000394:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000394:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000394:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000394:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000394:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000394:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000394:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000394:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000394:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000394:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000394:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.14;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.14,hg002_chrY_paternal_331.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000394;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000394;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000394;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15124403	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000395;Name=NLGN4Y
NA12877_chrY	CAT	exon	15124403	15124431	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000395:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15124432	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000395:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000395:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000395:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000395;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000395:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000395:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000395:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000395:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000395:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000395:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000395:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000395:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000395:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000395:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000395:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000395:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.15;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.15;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.15;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.15,hg002_chrY_paternal_331.15;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000395;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000395;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000395;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15124403	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000396;Name=NLGN4Y
NA12877_chrY	CAT	exon	15124403	15124810	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000396:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15124811	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000396:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000396:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000396:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000396;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000396:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000396:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000396:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000396:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000396:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000396:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000396:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000396:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000396:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000396:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000396:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000396:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.16;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.16;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.16;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.16,hg002_chrY_paternal_331.16;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000396;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000396;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000396;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15124403	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000397;Name=NLGN4Y
NA12877_chrY	CAT	exon	15124403	15124810	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000397:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15124811	15160465	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000397:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15160466	15160545	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000397:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15160546	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000397:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000397:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000397:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000397;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000397:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000397:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000397:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000397:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000397:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000397:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000397:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000397:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000397:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000397:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000397:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000397:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000397:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000397:7;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000397:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.17;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.17;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.17;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.17,hg002_chrY_paternal_331.17;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000397;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000397;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000397;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15124403	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000398;Name=NLGN4Y
NA12877_chrY	CAT	exon	15124403	15124431	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000398:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15124432	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000398:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000398:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000398:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000398;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000398:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000398:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000398:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000398:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000398:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000398:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000398:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000398:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000398:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000398:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000398:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000398:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000398:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000398:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000398:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.18;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.18;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.18;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.18,hg002_chrY_paternal_331.18;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000398;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000398;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000398;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15124403	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000399;Name=NLGN4Y
NA12877_chrY	CAT	exon	15124403	15124810	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000399:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15124811	15160465	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000399:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15160466	15160545	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000399:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15160546	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000399:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000399:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000399:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000399;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000399:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000399:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000399:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000399:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000399:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000399:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000399:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000399:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000399:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000399:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000399:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000399:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.19;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.19;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.19;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.19,hg002_chrY_paternal_331.19;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000399;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000399;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000399;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15124403	15333418	100	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000400;Name=NLGN4Y
NA12877_chrY	CAT	exon	15124403	15124582	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000400:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15124583	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000400:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000400:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000400:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000400;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000400:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000400:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000400:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000400:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000400:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000400:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15333320	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000400:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15333321	15333418	.	+	.	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000400:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15333321	15333406	.	+	2	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000400:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15333404	15333406	.	+	0	source_transcript=hg002_chrY_paternal_331.9;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.9,hg002_chrY_paternal_331.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000400;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000400;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000400;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15153608	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000401;Name=NLGN4Y
NA12877_chrY	CAT	exon	15153608	15160545	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000401:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15160546	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000401:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000401:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000401:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000401;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000401:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000401:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000401:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000401:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000401:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000401:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000401:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000401:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000401:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000401:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000401:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000401:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000401:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000401:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000401:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.20;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.20;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.20;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.20,hg002_chrY_paternal_331.20;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000401;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000401;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000401;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15182462	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000402;Name=NLGN4Y
NA12877_chrY	CAT	exon	15182462	15184164	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000402:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15184165	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000402:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000402:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000402:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000402;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000402:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000402:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000402:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000402:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000402:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000402:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000402:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000402:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000402:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000402:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000402:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000402:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000402:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000402:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000402:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.21;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.21;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.21;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.21,hg002_chrY_paternal_331.21;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000402;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000402;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000402;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15182462	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000403;Name=NLGN4Y
NA12877_chrY	CAT	exon	15182462	15184164	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000403:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15184165	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000403:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000403:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000403:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000403;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000403:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000403:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000403:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000403:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000403:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000403:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000403:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000403:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000403:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000403:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000403:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000403:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.22;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.22;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.22;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.22,hg002_chrY_paternal_331.22;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000403;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000403;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000403;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15187483	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000404;Name=NLGN4Y
NA12877_chrY	CAT	exon	15187483	15187587	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000404:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15187588	15221881	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000404:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000404:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000404:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000404;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000404:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000404:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000404:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000404:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000404:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000404:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000404:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000404:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000404:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000404:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000404:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000404:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000404:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000404:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000404:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.23;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.23;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.23;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.23,hg002_chrY_paternal_331.23;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000404;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000404;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000404;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15221882	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000405;Name=NLGN4Y
NA12877_chrY	CAT	exon	15221882	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000405:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15300907	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000405:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15300908	15301001	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000405:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15300965	15301001	.	+	0	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000405:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15300965	15300967	.	+	0	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000405;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15301002	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000405:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000405:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000405:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000405:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000405:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000405:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000405:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000405:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000405:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000405:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000405:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000405:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000405:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000405:6;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000405:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.24;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.24;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.24;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.24,hg002_chrY_paternal_331.24;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000405;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000405;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000405;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15221894	15333418	100	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000406;Name=NLGN4Y
NA12877_chrY	CAT	exon	15221894	15222464	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000406;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000406:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15221993	15222464	.	+	0	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000406;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000406:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15221993	15221995	.	+	0	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000406;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000406;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15222465	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000406;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000406:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000406;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000406:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15319328	15319387	.	+	2	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000406;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000406:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000406;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000406:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000406;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000406:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15322986	15323138	.	+	2	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000406;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000406:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15333320	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000406;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000406:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15333321	15333418	.	+	.	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000406;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000406:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15333321	15333406	.	+	2	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000406;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000406:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15333404	15333406	.	+	0	source_transcript=hg002_chrY_paternal_331.25;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.25;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.25;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.25,hg002_chrY_paternal_331.25;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000406;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000406;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000406;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	15304656	15445518	100	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_G0000151;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=NA12877_ch_T0000407;Name=NLGN4Y
NA12877_chrY	CAT	exon	15304656	15304676	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000407:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15304677	15319327	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000407:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15319328	15319387	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000407:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15319388	15322985	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000407:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15322986	15323138	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000407:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15323018	15323138	.	+	0	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000407:0;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	15323018	15323020	.	+	0	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=start_codon:NA12877_ch_T0000407;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15323139	15424051	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000407:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15424052	15424237	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000407:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15424052	15424237	.	+	2	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000407:1;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15424238	15429593	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000407:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15429594	15430383	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000407:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15429594	15430383	.	+	2	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000407:2;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15430384	15440276	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=intron:NA12877_ch_T0000407:4;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15440277	15445518	.	+	.	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=exon:NA12877_ch_T0000407:5;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	15440277	15441126	.	+	1	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=CDS:NA12877_ch_T0000407:3;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	15441124	15441126	.	+	0	source_transcript=hg002_chrY_paternal_331.26;source_transcript_name=hg002_chrY_paternal_331.26;source_gene=hg002_chrY_paternal_331;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_331;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_331.26;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_331.26;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=hg002_chrY_paternal_331.26,hg002_chrY_paternal_331.26;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000407;gene_id=NA12877_ch_G0000151;Parent=NA12877_ch_T0000407;transcript_name=hg002_chrY_paternal_331.26;gene_name=NLGN4Y;ID=stop_codon:NA12877_ch_T0000407;Name=NLGN4Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	15393507	15403897	.	-	.	source_gene_common_name=NLGN4Y-AS1;source_gene=hg002_chrY_paternal_333;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;gene_id=NA12877_ch_G0000152;gene_biotype=lncRNA;gene_name=NLGN4Y-AS1;gene_sources=liftoff;ID=NA12877_ch_G0000152;Name=NLGN4Y-AS1
NA12877_chrY	CAT	transcript	15393507	15403897	1000	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=NA12877_ch_T0000408;gene_id=NA12877_ch_G0000152;Parent=NA12877_ch_G0000152;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=NA12877_ch_T0000408;Name=NLGN4Y-AS1
NA12877_chrY	CAT	exon	15393507	15393852	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=NA12877_ch_T0000408;gene_id=NA12877_ch_G0000152;Parent=NA12877_ch_T0000408;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=exon:NA12877_ch_T0000408:0;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15393853	15398486	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=NA12877_ch_T0000408;gene_id=NA12877_ch_G0000152;Parent=NA12877_ch_T0000408;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=intron:NA12877_ch_T0000408:0;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15398487	15398574	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=NA12877_ch_T0000408;gene_id=NA12877_ch_G0000152;Parent=NA12877_ch_T0000408;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=exon:NA12877_ch_T0000408:1;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15398575	15401140	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=NA12877_ch_T0000408;gene_id=NA12877_ch_G0000152;Parent=NA12877_ch_T0000408;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=intron:NA12877_ch_T0000408:1;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15401141	15401209	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=NA12877_ch_T0000408;gene_id=NA12877_ch_G0000152;Parent=NA12877_ch_T0000408;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=exon:NA12877_ch_T0000408:2;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15401210	15403868	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=NA12877_ch_T0000408;gene_id=NA12877_ch_G0000152;Parent=NA12877_ch_T0000408;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=intron:NA12877_ch_T0000408:2;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15403869	15403897	.	-	.	source_transcript=hg002_chrY_paternal_333.1;source_transcript_name=hg002_chrY_paternal_333.1;source_gene=hg002_chrY_paternal_333;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_333;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_333.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=hg002_chrY_paternal_333.1,hg002_chrY_paternal_333.1;transcript_id=NA12877_ch_T0000408;gene_id=NA12877_ch_G0000152;Parent=NA12877_ch_T0000408;transcript_name=hg002_chrY_paternal_333.1;gene_name=NLGN4Y-AS1;ID=exon:NA12877_ch_T0000408:3;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	15846958	15964977	.	-	.	source_gene_common_name=LOC107987355;source_gene=hg002_chrY_paternal_336;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;gene_id=NA12877_ch_G0000153;gene_biotype=lncRNA;gene_name=LOC107987355;gene_sources=liftoff;ID=NA12877_ch_G0000153;Name=LOC107987355
NA12877_chrY	CAT	transcript	15846958	15964977	1000	-	.	source_transcript=hg002_chrY_paternal_336.1;source_transcript_name=hg002_chrY_paternal_336.1;source_gene=hg002_chrY_paternal_336;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_336;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_336.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_336.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987355;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;transcript_id=NA12877_ch_T0000409;gene_id=NA12877_ch_G0000153;Parent=NA12877_ch_G0000153;transcript_name=hg002_chrY_paternal_336.1;gene_name=LOC107987355;ID=NA12877_ch_T0000409;Name=LOC107987355
NA12877_chrY	CAT	exon	15846958	15847030	.	-	.	source_transcript=hg002_chrY_paternal_336.1;source_transcript_name=hg002_chrY_paternal_336.1;source_gene=hg002_chrY_paternal_336;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_336;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_336.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987355;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;transcript_id=NA12877_ch_T0000409;gene_id=NA12877_ch_G0000153;Parent=NA12877_ch_T0000409;transcript_name=hg002_chrY_paternal_336.1;gene_name=LOC107987355;ID=exon:NA12877_ch_T0000409:0;Name=LOC107987355;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15847031	15948510	.	-	.	source_transcript=hg002_chrY_paternal_336.1;source_transcript_name=hg002_chrY_paternal_336.1;source_gene=hg002_chrY_paternal_336;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_336;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_336.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987355;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;transcript_id=NA12877_ch_T0000409;gene_id=NA12877_ch_G0000153;Parent=NA12877_ch_T0000409;transcript_name=hg002_chrY_paternal_336.1;gene_name=LOC107987355;ID=intron:NA12877_ch_T0000409:0;Name=LOC107987355;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15948511	15948733	.	-	.	source_transcript=hg002_chrY_paternal_336.1;source_transcript_name=hg002_chrY_paternal_336.1;source_gene=hg002_chrY_paternal_336;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_336;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_336.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987355;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;transcript_id=NA12877_ch_T0000409;gene_id=NA12877_ch_G0000153;Parent=NA12877_ch_T0000409;transcript_name=hg002_chrY_paternal_336.1;gene_name=LOC107987355;ID=exon:NA12877_ch_T0000409:1;Name=LOC107987355;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	15948734	15964891	.	-	.	source_transcript=hg002_chrY_paternal_336.1;source_transcript_name=hg002_chrY_paternal_336.1;source_gene=hg002_chrY_paternal_336;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_336;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_336.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987355;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;transcript_id=NA12877_ch_T0000409;gene_id=NA12877_ch_G0000153;Parent=NA12877_ch_T0000409;transcript_name=hg002_chrY_paternal_336.1;gene_name=LOC107987355;ID=intron:NA12877_ch_T0000409:1;Name=LOC107987355;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	15964892	15964977	.	-	.	source_transcript=hg002_chrY_paternal_336.1;source_transcript_name=hg002_chrY_paternal_336.1;source_gene=hg002_chrY_paternal_336;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_336;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_336.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987355;alternative_source_transcripts=hg002_chrY_paternal_336.1,hg002_chrY_paternal_336.1;transcript_id=NA12877_ch_T0000409;gene_id=NA12877_ch_G0000153;Parent=NA12877_ch_T0000409;transcript_name=hg002_chrY_paternal_336.1;gene_name=LOC107987355;ID=exon:NA12877_ch_T0000409:2;Name=LOC107987355;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	16738209	16738340	.	-	.	source_gene_common_name=LOC124900508;source_gene=hg002_chrY_paternal_339;alternative_source_transcripts=hg002_chrY_paternal_339.1,hg002_chrY_paternal_339.1;gene_id=NA12877_ch_G0000154;gene_biotype=snoRNA;gene_name=LOC124900508;gene_sources=liftoff;ID=NA12877_ch_G0000154;Name=LOC124900508
NA12877_chrY	CAT	transcript	16738209	16738340	1000	-	.	source_transcript=hg002_chrY_paternal_339.1;source_transcript_name=hg002_chrY_paternal_339.1;source_gene=hg002_chrY_paternal_339;source_gene_biotype=snoRNA;original_gene_id=hg002_chrY_paternal_339;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=hg002_chrY_paternal_339.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_339.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124900508;alternative_source_transcripts=hg002_chrY_paternal_339.1,hg002_chrY_paternal_339.1;transcript_id=NA12877_ch_T0000410;gene_id=NA12877_ch_G0000154;Parent=NA12877_ch_G0000154;transcript_name=hg002_chrY_paternal_339.1;gene_name=LOC124900508;ID=NA12877_ch_T0000410;Name=LOC124900508
NA12877_chrY	CAT	exon	16738209	16738340	.	-	.	source_transcript=hg002_chrY_paternal_339.1;source_transcript_name=hg002_chrY_paternal_339.1;source_gene=hg002_chrY_paternal_339;source_gene_biotype=snoRNA;original_gene_id=hg002_chrY_paternal_339;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=hg002_chrY_paternal_339.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_339.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124900508;alternative_source_transcripts=hg002_chrY_paternal_339.1,hg002_chrY_paternal_339.1;transcript_id=NA12877_ch_T0000410;gene_id=NA12877_ch_G0000154;Parent=NA12877_ch_T0000410;transcript_name=hg002_chrY_paternal_339.1;gene_name=LOC124900508;ID=exon:NA12877_ch_T0000410:0;Name=LOC124900508;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18100875	18116659	.	+	.	source_gene_common_name=FAM41AY2;source_gene=hg002_chrY_paternal_344;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;gene_id=NA12877_ch_G0000155;gene_biotype=lncRNA;gene_name=FAM41AY2;gene_sources=liftoff;ID=NA12877_ch_G0000155;Name=FAM41AY2
NA12877_chrY	CAT	transcript	18100875	18116659	1000	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_G0000155;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=NA12877_ch_T0000411;Name=FAM41AY2
NA12877_chrY	CAT	exon	18100875	18101032	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:NA12877_ch_T0000411:0;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18101033	18101627	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:NA12877_ch_T0000411:0;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18101628	18101677	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:NA12877_ch_T0000411:1;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18101678	18113014	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:NA12877_ch_T0000411:1;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18113015	18113143	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:NA12877_ch_T0000411:2;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18113144	18113390	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:NA12877_ch_T0000411:2;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18113391	18113484	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:NA12877_ch_T0000411:3;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18113485	18114077	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:NA12877_ch_T0000411:3;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18114078	18114248	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:NA12877_ch_T0000411:4;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18114249	18114357	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:NA12877_ch_T0000411:4;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18114358	18114451	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:NA12877_ch_T0000411:5;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18114452	18114725	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:NA12877_ch_T0000411:5;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18114726	18114935	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:NA12877_ch_T0000411:6;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18114936	18115228	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:NA12877_ch_T0000411:6;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18115229	18115416	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:NA12877_ch_T0000411:7;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18115417	18115628	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:NA12877_ch_T0000411:7;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18115629	18115850	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:NA12877_ch_T0000411:8;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18115851	18115932	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=intron:NA12877_ch_T0000411:8;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18115933	18116659	.	+	.	source_transcript=hg002_chrY_paternal_344.1;source_transcript_name=hg002_chrY_paternal_344.1;source_gene=hg002_chrY_paternal_344;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_344;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_344.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_344.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;alternative_source_transcripts=hg002_chrY_paternal_344.1,hg002_chrY_paternal_344.1;transcript_id=NA12877_ch_T0000411;gene_id=NA12877_ch_G0000155;Parent=NA12877_ch_T0000411;transcript_name=hg002_chrY_paternal_344.1;gene_name=FAM41AY2;ID=exon:NA12877_ch_T0000411:9;Name=FAM41AY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18154063	18158757	.	-	.	source_gene_common_name=LOC105377220;source_gene=hg002_chrY_paternal_391;gene_id=NA12877_ch_G0000156;gene_biotype=lncRNA;gene_name=LOC105377220;gene_sources=liftoff;ID=NA12877_ch_G0000156;Name=LOC105377220
NA12877_chrY	CAT	transcript	18154063	18158757	1000	-	.	source_transcript=hg002_chrY_paternal_391.1;source_transcript_name=hg002_chrY_paternal_391.1;source_gene=hg002_chrY_paternal_391;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_391;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_391.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_391.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377220;transcript_id=NA12877_ch_T0000412;gene_id=NA12877_ch_G0000156;Parent=NA12877_ch_G0000156;transcript_name=hg002_chrY_paternal_391.1;gene_name=LOC105377220;ID=NA12877_ch_T0000412;Name=LOC105377220
NA12877_chrY	CAT	exon	18154063	18155929	.	-	.	source_transcript=hg002_chrY_paternal_391.1;source_transcript_name=hg002_chrY_paternal_391.1;source_gene=hg002_chrY_paternal_391;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_391;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_391.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377220;transcript_id=NA12877_ch_T0000412;gene_id=NA12877_ch_G0000156;Parent=NA12877_ch_T0000412;transcript_name=hg002_chrY_paternal_391.1;gene_name=LOC105377220;ID=exon:NA12877_ch_T0000412:0;Name=LOC105377220;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18155930	18156639	.	-	.	source_transcript=hg002_chrY_paternal_391.1;source_transcript_name=hg002_chrY_paternal_391.1;source_gene=hg002_chrY_paternal_391;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_391;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_391.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377220;transcript_id=NA12877_ch_T0000412;gene_id=NA12877_ch_G0000156;Parent=NA12877_ch_T0000412;transcript_name=hg002_chrY_paternal_391.1;gene_name=LOC105377220;ID=intron:NA12877_ch_T0000412:0;Name=LOC105377220;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18156640	18156768	.	-	.	source_transcript=hg002_chrY_paternal_391.1;source_transcript_name=hg002_chrY_paternal_391.1;source_gene=hg002_chrY_paternal_391;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_391;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_391.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377220;transcript_id=NA12877_ch_T0000412;gene_id=NA12877_ch_G0000156;Parent=NA12877_ch_T0000412;transcript_name=hg002_chrY_paternal_391.1;gene_name=LOC105377220;ID=exon:NA12877_ch_T0000412:1;Name=LOC105377220;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18156769	18157982	.	-	.	source_transcript=hg002_chrY_paternal_391.1;source_transcript_name=hg002_chrY_paternal_391.1;source_gene=hg002_chrY_paternal_391;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_391;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_391.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377220;transcript_id=NA12877_ch_T0000412;gene_id=NA12877_ch_G0000156;Parent=NA12877_ch_T0000412;transcript_name=hg002_chrY_paternal_391.1;gene_name=LOC105377220;ID=intron:NA12877_ch_T0000412:1;Name=LOC105377220;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18157983	18158757	.	-	.	source_transcript=hg002_chrY_paternal_391.1;source_transcript_name=hg002_chrY_paternal_391.1;source_gene=hg002_chrY_paternal_391;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_391;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_391.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377220;transcript_id=NA12877_ch_T0000412;gene_id=NA12877_ch_G0000156;Parent=NA12877_ch_T0000412;transcript_name=hg002_chrY_paternal_391.1;gene_name=LOC105377220;ID=exon:NA12877_ch_T0000412:2;Name=LOC105377220;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18175081	18179372	.	-	.	source_gene_common_name=FAM224B;source_gene=hg002_chrY_paternal_389;gene_id=NA12877_ch_G0000157;gene_biotype=lncRNA;gene_name=FAM224B;gene_sources=liftoff;ID=NA12877_ch_G0000157;Name=FAM224B
NA12877_chrY	CAT	transcript	18175081	18179372	1000	-	.	source_transcript=hg002_chrY_paternal_389.1;source_transcript_name=hg002_chrY_paternal_389.1;source_gene=hg002_chrY_paternal_389;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_389;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_389.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_389.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;transcript_id=NA12877_ch_T0000413;gene_id=NA12877_ch_G0000157;Parent=NA12877_ch_G0000157;transcript_name=hg002_chrY_paternal_389.1;gene_name=FAM224B;ID=NA12877_ch_T0000413;Name=FAM224B
NA12877_chrY	CAT	exon	18175081	18175287	.	-	.	source_transcript=hg002_chrY_paternal_389.1;source_transcript_name=hg002_chrY_paternal_389.1;source_gene=hg002_chrY_paternal_389;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_389;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_389.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_389.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;transcript_id=NA12877_ch_T0000413;gene_id=NA12877_ch_G0000157;Parent=NA12877_ch_T0000413;transcript_name=hg002_chrY_paternal_389.1;gene_name=FAM224B;ID=exon:NA12877_ch_T0000413:0;Name=FAM224B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18175288	18176622	.	-	.	source_transcript=hg002_chrY_paternal_389.1;source_transcript_name=hg002_chrY_paternal_389.1;source_gene=hg002_chrY_paternal_389;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_389;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_389.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_389.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;transcript_id=NA12877_ch_T0000413;gene_id=NA12877_ch_G0000157;Parent=NA12877_ch_T0000413;transcript_name=hg002_chrY_paternal_389.1;gene_name=FAM224B;ID=intron:NA12877_ch_T0000413:0;Name=FAM224B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18176623	18176740	.	-	.	source_transcript=hg002_chrY_paternal_389.1;source_transcript_name=hg002_chrY_paternal_389.1;source_gene=hg002_chrY_paternal_389;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_389;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_389.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_389.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;transcript_id=NA12877_ch_T0000413;gene_id=NA12877_ch_G0000157;Parent=NA12877_ch_T0000413;transcript_name=hg002_chrY_paternal_389.1;gene_name=FAM224B;ID=exon:NA12877_ch_T0000413:1;Name=FAM224B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18176741	18179235	.	-	.	source_transcript=hg002_chrY_paternal_389.1;source_transcript_name=hg002_chrY_paternal_389.1;source_gene=hg002_chrY_paternal_389;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_389;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_389.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_389.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;transcript_id=NA12877_ch_T0000413;gene_id=NA12877_ch_G0000157;Parent=NA12877_ch_T0000413;transcript_name=hg002_chrY_paternal_389.1;gene_name=FAM224B;ID=intron:NA12877_ch_T0000413:1;Name=FAM224B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18179236	18179372	.	-	.	source_transcript=hg002_chrY_paternal_389.1;source_transcript_name=hg002_chrY_paternal_389.1;source_gene=hg002_chrY_paternal_389;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_389;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_389.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_389.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;transcript_id=NA12877_ch_T0000413;gene_id=NA12877_ch_G0000157;Parent=NA12877_ch_T0000413;transcript_name=hg002_chrY_paternal_389.1;gene_name=FAM224B;ID=exon:NA12877_ch_T0000413:2;Name=FAM224B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18288422	18289222	.	-	.	source_gene_common_name=LOC105377219;source_gene=hg002_chrY_paternal_352;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;gene_id=NA12877_ch_G0000158;gene_biotype=lncRNA;gene_name=LOC105377219;gene_sources=liftoff;ID=NA12877_ch_G0000158;Name=LOC105377219
NA12877_chrY	CAT	transcript	18288422	18289222	1000	-	.	source_transcript=hg002_chrY_paternal_352.1;source_transcript_name=hg002_chrY_paternal_352.1;source_gene=hg002_chrY_paternal_352;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_352;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_352.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_352.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377219;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;transcript_id=NA12877_ch_T0000414;gene_id=NA12877_ch_G0000158;Parent=NA12877_ch_G0000158;transcript_name=hg002_chrY_paternal_352.1;gene_name=LOC105377219;ID=NA12877_ch_T0000414;Name=LOC105377219
NA12877_chrY	CAT	exon	18288422	18288878	.	-	.	source_transcript=hg002_chrY_paternal_352.1;source_transcript_name=hg002_chrY_paternal_352.1;source_gene=hg002_chrY_paternal_352;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_352;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_352.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_352.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377219;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;transcript_id=NA12877_ch_T0000414;gene_id=NA12877_ch_G0000158;Parent=NA12877_ch_T0000414;transcript_name=hg002_chrY_paternal_352.1;gene_name=LOC105377219;ID=exon:NA12877_ch_T0000414:0;Name=LOC105377219;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18288879	18288966	.	-	.	source_transcript=hg002_chrY_paternal_352.1;source_transcript_name=hg002_chrY_paternal_352.1;source_gene=hg002_chrY_paternal_352;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_352;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_352.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_352.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377219;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;transcript_id=NA12877_ch_T0000414;gene_id=NA12877_ch_G0000158;Parent=NA12877_ch_T0000414;transcript_name=hg002_chrY_paternal_352.1;gene_name=LOC105377219;ID=intron:NA12877_ch_T0000414:0;Name=LOC105377219;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18288967	18289052	.	-	.	source_transcript=hg002_chrY_paternal_352.1;source_transcript_name=hg002_chrY_paternal_352.1;source_gene=hg002_chrY_paternal_352;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_352;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_352.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_352.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377219;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;transcript_id=NA12877_ch_T0000414;gene_id=NA12877_ch_G0000158;Parent=NA12877_ch_T0000414;transcript_name=hg002_chrY_paternal_352.1;gene_name=LOC105377219;ID=exon:NA12877_ch_T0000414:1;Name=LOC105377219;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18289053	18289139	.	-	.	source_transcript=hg002_chrY_paternal_352.1;source_transcript_name=hg002_chrY_paternal_352.1;source_gene=hg002_chrY_paternal_352;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_352;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_352.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_352.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377219;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;transcript_id=NA12877_ch_T0000414;gene_id=NA12877_ch_G0000158;Parent=NA12877_ch_T0000414;transcript_name=hg002_chrY_paternal_352.1;gene_name=LOC105377219;ID=intron:NA12877_ch_T0000414:1;Name=LOC105377219;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18289140	18289222	.	-	.	source_transcript=hg002_chrY_paternal_352.1;source_transcript_name=hg002_chrY_paternal_352.1;source_gene=hg002_chrY_paternal_352;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_352;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_352.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_352.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377219;alternative_source_transcripts=hg002_chrY_paternal_352.1,hg002_chrY_paternal_352.1;transcript_id=NA12877_ch_T0000414;gene_id=NA12877_ch_G0000158;Parent=NA12877_ch_T0000414;transcript_name=hg002_chrY_paternal_352.1;gene_name=LOC105377219;ID=exon:NA12877_ch_T0000414:2;Name=LOC105377219;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18292840	18299700	.	-	.	source_gene_common_name=LOC124905303;source_gene=hg002_chrY_paternal_353;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;gene_id=NA12877_ch_G0000159;gene_biotype=lncRNA;gene_name=LOC124905303;gene_sources=liftoff;ID=NA12877_ch_G0000159;Name=LOC124905303
NA12877_chrY	CAT	transcript	18292840	18299700	1000	-	.	source_transcript=hg002_chrY_paternal_353.1;source_transcript_name=hg002_chrY_paternal_353.1;source_gene=hg002_chrY_paternal_353;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_353;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_353.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_353.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905303;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;transcript_id=NA12877_ch_T0000415;gene_id=NA12877_ch_G0000159;Parent=NA12877_ch_G0000159;transcript_name=hg002_chrY_paternal_353.1;gene_name=LOC124905303;ID=NA12877_ch_T0000415;Name=LOC124905303
NA12877_chrY	CAT	exon	18292840	18296784	.	-	.	source_transcript=hg002_chrY_paternal_353.1;source_transcript_name=hg002_chrY_paternal_353.1;source_gene=hg002_chrY_paternal_353;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_353;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_353.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_353.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905303;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;transcript_id=NA12877_ch_T0000415;gene_id=NA12877_ch_G0000159;Parent=NA12877_ch_T0000415;transcript_name=hg002_chrY_paternal_353.1;gene_name=LOC124905303;ID=exon:NA12877_ch_T0000415:0;Name=LOC124905303;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18296785	18296872	.	-	.	source_transcript=hg002_chrY_paternal_353.1;source_transcript_name=hg002_chrY_paternal_353.1;source_gene=hg002_chrY_paternal_353;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_353;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_353.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_353.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905303;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;transcript_id=NA12877_ch_T0000415;gene_id=NA12877_ch_G0000159;Parent=NA12877_ch_T0000415;transcript_name=hg002_chrY_paternal_353.1;gene_name=LOC124905303;ID=intron:NA12877_ch_T0000415:0;Name=LOC124905303;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18296873	18297621	.	-	.	source_transcript=hg002_chrY_paternal_353.1;source_transcript_name=hg002_chrY_paternal_353.1;source_gene=hg002_chrY_paternal_353;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_353;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_353.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_353.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905303;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;transcript_id=NA12877_ch_T0000415;gene_id=NA12877_ch_G0000159;Parent=NA12877_ch_T0000415;transcript_name=hg002_chrY_paternal_353.1;gene_name=LOC124905303;ID=exon:NA12877_ch_T0000415:1;Name=LOC124905303;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18297622	18297708	.	-	.	source_transcript=hg002_chrY_paternal_353.1;source_transcript_name=hg002_chrY_paternal_353.1;source_gene=hg002_chrY_paternal_353;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_353;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_353.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_353.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905303;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;transcript_id=NA12877_ch_T0000415;gene_id=NA12877_ch_G0000159;Parent=NA12877_ch_T0000415;transcript_name=hg002_chrY_paternal_353.1;gene_name=LOC124905303;ID=intron:NA12877_ch_T0000415:1;Name=LOC124905303;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18297709	18299700	.	-	.	source_transcript=hg002_chrY_paternal_353.1;source_transcript_name=hg002_chrY_paternal_353.1;source_gene=hg002_chrY_paternal_353;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_353;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_353.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_353.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905303;alternative_source_transcripts=hg002_chrY_paternal_353.1,hg002_chrY_paternal_353.1;transcript_id=NA12877_ch_T0000415;gene_id=NA12877_ch_G0000159;Parent=NA12877_ch_T0000415;transcript_name=hg002_chrY_paternal_353.1;gene_name=LOC124905303;ID=exon:NA12877_ch_T0000415:2;Name=LOC124905303;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18368884	18370464	.	-	.	source_gene_common_name=XKRY2;source_gene=hg002_chrY_paternal_380;alternative_source_transcripts=hg002_chrY_paternal_358.1,hg002_chrY_paternal_358.1;gene_id=NA12877_ch_G0000160;gene_biotype=transcribed_pseudogene;gene_name=XKRY2;gene_sources=liftoff;ID=NA12877_ch_G0000160;Name=XKRY2
NA12877_chrY	CAT	transcript	18368884	18370464	1000	-	.	source_transcript=hg002_chrY_paternal_380.1;source_transcript_name=hg002_chrY_paternal_380.1;source_gene=hg002_chrY_paternal_380;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_380;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_380.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_380.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY2;alternative_source_transcripts=hg002_chrY_paternal_358.1,hg002_chrY_paternal_358.1;transcript_id=NA12877_ch_T0000416;gene_id=NA12877_ch_G0000160;Parent=NA12877_ch_G0000160;transcript_name=hg002_chrY_paternal_380.1;gene_name=XKRY2;ID=NA12877_ch_T0000416;Name=XKRY2
NA12877_chrY	CAT	exon	18368884	18370464	.	-	.	source_transcript=hg002_chrY_paternal_380.1;source_transcript_name=hg002_chrY_paternal_380.1;source_gene=hg002_chrY_paternal_380;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_380;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_380.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_380.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY2;alternative_source_transcripts=hg002_chrY_paternal_358.1,hg002_chrY_paternal_358.1;transcript_id=NA12877_ch_T0000416;gene_id=NA12877_ch_G0000160;Parent=NA12877_ch_T0000416;transcript_name=hg002_chrY_paternal_380.1;gene_name=XKRY2;ID=exon:NA12877_ch_T0000416:0;Name=XKRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18478172	18480131	.	-	.	source_gene_common_name=CDY2A;source_gene=hg002_chrY_paternal_365;alternative_source_transcripts=hg002_chrY_paternal_365.1,hg002_chrY_paternal_365.1;gene_id=NA12877_ch_G0000161;gene_biotype=protein_coding;gene_name=CDY2A;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000161;Name=CDY2A
NA12877_chrY	CAT	transcript	18478172	18480131	100	-	.	source_transcript=hg002_chrY_paternal_365.1;source_transcript_name=hg002_chrY_paternal_365.1;source_gene=hg002_chrY_paternal_365;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_365;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_365.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_365.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=hg002_chrY_paternal_365.1,hg002_chrY_paternal_365.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000417;gene_id=NA12877_ch_G0000161;Parent=NA12877_ch_G0000161;transcript_name=hg002_chrY_paternal_365.1;gene_name=CDY2A;ID=NA12877_ch_T0000417;Name=CDY2A
NA12877_chrY	CAT	exon	18478172	18480131	.	-	.	source_transcript=hg002_chrY_paternal_365.1;source_transcript_name=hg002_chrY_paternal_365.1;source_gene=hg002_chrY_paternal_365;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_365;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_365.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_365.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=hg002_chrY_paternal_365.1,hg002_chrY_paternal_365.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000417;gene_id=NA12877_ch_G0000161;Parent=NA12877_ch_T0000417;transcript_name=hg002_chrY_paternal_365.1;gene_name=CDY2A;ID=exon:NA12877_ch_T0000417:0;Name=CDY2A;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	18478178	18479803	.	-	0	source_transcript=hg002_chrY_paternal_365.1;source_transcript_name=hg002_chrY_paternal_365.1;source_gene=hg002_chrY_paternal_365;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_365;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_365.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_365.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=hg002_chrY_paternal_365.1,hg002_chrY_paternal_365.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000417;gene_id=NA12877_ch_G0000161;Parent=NA12877_ch_T0000417;transcript_name=hg002_chrY_paternal_365.1;gene_name=CDY2A;ID=CDS:NA12877_ch_T0000417:0;Name=CDY2A;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	18478178	18478180	.	-	0	source_transcript=hg002_chrY_paternal_365.1;source_transcript_name=hg002_chrY_paternal_365.1;source_gene=hg002_chrY_paternal_365;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_365;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_365.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_365.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=hg002_chrY_paternal_365.1,hg002_chrY_paternal_365.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000417;gene_id=NA12877_ch_G0000161;Parent=NA12877_ch_T0000417;transcript_name=hg002_chrY_paternal_365.1;gene_name=CDY2A;ID=stop_codon:NA12877_ch_T0000417;Name=CDY2A;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	18479801	18479803	.	-	0	source_transcript=hg002_chrY_paternal_365.1;source_transcript_name=hg002_chrY_paternal_365.1;source_gene=hg002_chrY_paternal_365;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_365;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_365.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_365.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=hg002_chrY_paternal_365.1,hg002_chrY_paternal_365.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000417;gene_id=NA12877_ch_G0000161;Parent=NA12877_ch_T0000417;transcript_name=hg002_chrY_paternal_365.1;gene_name=CDY2A;ID=start_codon:NA12877_ch_T0000417;Name=CDY2A;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18625703	18627663	.	+	.	source_gene_common_name=CDY2B;source_gene=hg002_chrY_paternal_373;alternative_source_transcripts=hg002_chrY_paternal_373.1,hg002_chrY_paternal_373.1;gene_id=NA12877_ch_G0000162;gene_biotype=protein_coding;gene_name=CDY2B;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000162;Name=CDY2B
NA12877_chrY	CAT	transcript	18625703	18627663	100	+	.	source_transcript=hg002_chrY_paternal_373.1;source_transcript_name=hg002_chrY_paternal_373.1;source_gene=hg002_chrY_paternal_373;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_373;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_373.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_373.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=hg002_chrY_paternal_373.1,hg002_chrY_paternal_373.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000418;gene_id=NA12877_ch_G0000162;Parent=NA12877_ch_G0000162;transcript_name=hg002_chrY_paternal_373.1;gene_name=CDY2B;ID=NA12877_ch_T0000418;Name=CDY2B
NA12877_chrY	CAT	exon	18625703	18627663	.	+	.	source_transcript=hg002_chrY_paternal_373.1;source_transcript_name=hg002_chrY_paternal_373.1;source_gene=hg002_chrY_paternal_373;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_373;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_373.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_373.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=hg002_chrY_paternal_373.1,hg002_chrY_paternal_373.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000418;gene_id=NA12877_ch_G0000162;Parent=NA12877_ch_T0000418;transcript_name=hg002_chrY_paternal_373.1;gene_name=CDY2B;ID=exon:NA12877_ch_T0000418:0;Name=CDY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	18626031	18627656	.	+	0	source_transcript=hg002_chrY_paternal_373.1;source_transcript_name=hg002_chrY_paternal_373.1;source_gene=hg002_chrY_paternal_373;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_373;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_373.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_373.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=hg002_chrY_paternal_373.1,hg002_chrY_paternal_373.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000418;gene_id=NA12877_ch_G0000162;Parent=NA12877_ch_T0000418;transcript_name=hg002_chrY_paternal_373.1;gene_name=CDY2B;ID=CDS:NA12877_ch_T0000418:0;Name=CDY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	18626031	18626033	.	+	0	source_transcript=hg002_chrY_paternal_373.1;source_transcript_name=hg002_chrY_paternal_373.1;source_gene=hg002_chrY_paternal_373;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_373;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_373.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_373.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=hg002_chrY_paternal_373.1,hg002_chrY_paternal_373.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000418;gene_id=NA12877_ch_G0000162;Parent=NA12877_ch_T0000418;transcript_name=hg002_chrY_paternal_373.1;gene_name=CDY2B;ID=start_codon:NA12877_ch_T0000418;Name=CDY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	18627654	18627656	.	+	0	source_transcript=hg002_chrY_paternal_373.1;source_transcript_name=hg002_chrY_paternal_373.1;source_gene=hg002_chrY_paternal_373;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_373;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_373.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_373.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=hg002_chrY_paternal_373.1,hg002_chrY_paternal_373.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000418;gene_id=NA12877_ch_G0000162;Parent=NA12877_ch_T0000418;transcript_name=hg002_chrY_paternal_373.1;gene_name=CDY2B;ID=stop_codon:NA12877_ch_T0000418;Name=CDY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18735372	18736952	.	+	.	source_gene_common_name=XKRY;source_gene=hg002_chrY_paternal_358;alternative_source_transcripts=hg002_chrY_paternal_380.1,hg002_chrY_paternal_380.1;gene_id=NA12877_ch_G0000163;gene_biotype=transcribed_pseudogene;gene_name=XKRY;gene_sources=liftoff;ID=NA12877_ch_G0000163;Name=XKRY
NA12877_chrY	CAT	transcript	18735372	18736952	1000	+	.	source_transcript=hg002_chrY_paternal_358.1;source_transcript_name=hg002_chrY_paternal_358.1;source_gene=hg002_chrY_paternal_358;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_358;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_358.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_358.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY;alternative_source_transcripts=hg002_chrY_paternal_380.1,hg002_chrY_paternal_380.1;transcript_id=NA12877_ch_T0000419;gene_id=NA12877_ch_G0000163;Parent=NA12877_ch_G0000163;transcript_name=hg002_chrY_paternal_358.1;gene_name=XKRY;ID=NA12877_ch_T0000419;Name=XKRY
NA12877_chrY	CAT	exon	18735372	18736952	.	+	.	source_transcript=hg002_chrY_paternal_358.1;source_transcript_name=hg002_chrY_paternal_358.1;source_gene=hg002_chrY_paternal_358;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_358;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_358.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_358.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY;alternative_source_transcripts=hg002_chrY_paternal_380.1,hg002_chrY_paternal_380.1;transcript_id=NA12877_ch_T0000419;gene_id=NA12877_ch_G0000163;Parent=NA12877_ch_T0000419;transcript_name=hg002_chrY_paternal_358.1;gene_name=XKRY;ID=exon:NA12877_ch_T0000419:0;Name=XKRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18806141	18813001	.	+	.	source_gene_common_name=LOC124905302;source_gene=hg002_chrY_paternal_385;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;gene_id=NA12877_ch_G0000164;gene_biotype=lncRNA;gene_name=LOC124905302;gene_sources=liftoff;ID=NA12877_ch_G0000164;Name=LOC124905302
NA12877_chrY	CAT	transcript	18806141	18813001	1000	+	.	source_transcript=hg002_chrY_paternal_385.1;source_transcript_name=hg002_chrY_paternal_385.1;source_gene=hg002_chrY_paternal_385;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_385;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_385.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_385.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905302;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;transcript_id=NA12877_ch_T0000420;gene_id=NA12877_ch_G0000164;Parent=NA12877_ch_G0000164;transcript_name=hg002_chrY_paternal_385.1;gene_name=LOC124905302;ID=NA12877_ch_T0000420;Name=LOC124905302
NA12877_chrY	CAT	exon	18806141	18808132	.	+	.	source_transcript=hg002_chrY_paternal_385.1;source_transcript_name=hg002_chrY_paternal_385.1;source_gene=hg002_chrY_paternal_385;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_385;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_385.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905302;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;transcript_id=NA12877_ch_T0000420;gene_id=NA12877_ch_G0000164;Parent=NA12877_ch_T0000420;transcript_name=hg002_chrY_paternal_385.1;gene_name=LOC124905302;ID=exon:NA12877_ch_T0000420:0;Name=LOC124905302;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18808133	18808219	.	+	.	source_transcript=hg002_chrY_paternal_385.1;source_transcript_name=hg002_chrY_paternal_385.1;source_gene=hg002_chrY_paternal_385;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_385;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_385.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905302;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;transcript_id=NA12877_ch_T0000420;gene_id=NA12877_ch_G0000164;Parent=NA12877_ch_T0000420;transcript_name=hg002_chrY_paternal_385.1;gene_name=LOC124905302;ID=intron:NA12877_ch_T0000420:0;Name=LOC124905302;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18808220	18808968	.	+	.	source_transcript=hg002_chrY_paternal_385.1;source_transcript_name=hg002_chrY_paternal_385.1;source_gene=hg002_chrY_paternal_385;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_385;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_385.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905302;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;transcript_id=NA12877_ch_T0000420;gene_id=NA12877_ch_G0000164;Parent=NA12877_ch_T0000420;transcript_name=hg002_chrY_paternal_385.1;gene_name=LOC124905302;ID=exon:NA12877_ch_T0000420:1;Name=LOC124905302;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18808969	18809056	.	+	.	source_transcript=hg002_chrY_paternal_385.1;source_transcript_name=hg002_chrY_paternal_385.1;source_gene=hg002_chrY_paternal_385;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_385;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_385.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905302;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;transcript_id=NA12877_ch_T0000420;gene_id=NA12877_ch_G0000164;Parent=NA12877_ch_T0000420;transcript_name=hg002_chrY_paternal_385.1;gene_name=LOC124905302;ID=intron:NA12877_ch_T0000420:1;Name=LOC124905302;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18809057	18813001	.	+	.	source_transcript=hg002_chrY_paternal_385.1;source_transcript_name=hg002_chrY_paternal_385.1;source_gene=hg002_chrY_paternal_385;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_385;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_385.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905302;alternative_source_transcripts=hg002_chrY_paternal_385.1,hg002_chrY_paternal_385.1;transcript_id=NA12877_ch_T0000420;gene_id=NA12877_ch_G0000164;Parent=NA12877_ch_T0000420;transcript_name=hg002_chrY_paternal_385.1;gene_name=LOC124905302;ID=exon:NA12877_ch_T0000420:2;Name=LOC124905302;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18816619	18817419	.	+	.	source_gene_common_name=LOC105377218;source_gene=hg002_chrY_paternal_386;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;gene_id=NA12877_ch_G0000165;gene_biotype=lncRNA;gene_name=LOC105377218;gene_sources=liftoff;ID=NA12877_ch_G0000165;Name=LOC105377218
NA12877_chrY	CAT	transcript	18816619	18817419	1000	+	.	source_transcript=hg002_chrY_paternal_386.1;source_transcript_name=hg002_chrY_paternal_386.1;source_gene=hg002_chrY_paternal_386;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_386;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_386.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_386.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377218;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;transcript_id=NA12877_ch_T0000421;gene_id=NA12877_ch_G0000165;Parent=NA12877_ch_G0000165;transcript_name=hg002_chrY_paternal_386.1;gene_name=LOC105377218;ID=NA12877_ch_T0000421;Name=LOC105377218
NA12877_chrY	CAT	exon	18816619	18816701	.	+	.	source_transcript=hg002_chrY_paternal_386.1;source_transcript_name=hg002_chrY_paternal_386.1;source_gene=hg002_chrY_paternal_386;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_386;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_386.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377218;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;transcript_id=NA12877_ch_T0000421;gene_id=NA12877_ch_G0000165;Parent=NA12877_ch_T0000421;transcript_name=hg002_chrY_paternal_386.1;gene_name=LOC105377218;ID=exon:NA12877_ch_T0000421:0;Name=LOC105377218;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18816702	18816788	.	+	.	source_transcript=hg002_chrY_paternal_386.1;source_transcript_name=hg002_chrY_paternal_386.1;source_gene=hg002_chrY_paternal_386;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_386;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_386.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377218;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;transcript_id=NA12877_ch_T0000421;gene_id=NA12877_ch_G0000165;Parent=NA12877_ch_T0000421;transcript_name=hg002_chrY_paternal_386.1;gene_name=LOC105377218;ID=intron:NA12877_ch_T0000421:0;Name=LOC105377218;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18816789	18816874	.	+	.	source_transcript=hg002_chrY_paternal_386.1;source_transcript_name=hg002_chrY_paternal_386.1;source_gene=hg002_chrY_paternal_386;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_386;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_386.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377218;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;transcript_id=NA12877_ch_T0000421;gene_id=NA12877_ch_G0000165;Parent=NA12877_ch_T0000421;transcript_name=hg002_chrY_paternal_386.1;gene_name=LOC105377218;ID=exon:NA12877_ch_T0000421:1;Name=LOC105377218;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18816875	18816962	.	+	.	source_transcript=hg002_chrY_paternal_386.1;source_transcript_name=hg002_chrY_paternal_386.1;source_gene=hg002_chrY_paternal_386;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_386;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_386.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377218;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;transcript_id=NA12877_ch_T0000421;gene_id=NA12877_ch_G0000165;Parent=NA12877_ch_T0000421;transcript_name=hg002_chrY_paternal_386.1;gene_name=LOC105377218;ID=intron:NA12877_ch_T0000421:1;Name=LOC105377218;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18816963	18817419	.	+	.	source_transcript=hg002_chrY_paternal_386.1;source_transcript_name=hg002_chrY_paternal_386.1;source_gene=hg002_chrY_paternal_386;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_386;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_386.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377218;alternative_source_transcripts=hg002_chrY_paternal_386.1,hg002_chrY_paternal_386.1;transcript_id=NA12877_ch_T0000421;gene_id=NA12877_ch_G0000165;Parent=NA12877_ch_T0000421;transcript_name=hg002_chrY_paternal_386.1;gene_name=LOC105377218;ID=exon:NA12877_ch_T0000421:2;Name=LOC105377218;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18926470	18930764	.	+	.	source_gene_common_name=FAM224A;source_gene=hg002_chrY_paternal_349;gene_id=NA12877_ch_G0000166;gene_biotype=lncRNA;gene_name=FAM224A;gene_sources=liftoff;ID=NA12877_ch_G0000166;Name=FAM224A
NA12877_chrY	CAT	transcript	18926470	18930764	1000	+	.	source_transcript=hg002_chrY_paternal_349.1;source_transcript_name=hg002_chrY_paternal_349.1;source_gene=hg002_chrY_paternal_349;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_349;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_349.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_349.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;transcript_id=NA12877_ch_T0000422;gene_id=NA12877_ch_G0000166;Parent=NA12877_ch_G0000166;transcript_name=hg002_chrY_paternal_349.1;gene_name=FAM224A;ID=NA12877_ch_T0000422;Name=FAM224A
NA12877_chrY	CAT	exon	18926470	18926627	.	+	.	source_transcript=hg002_chrY_paternal_349.1;source_transcript_name=hg002_chrY_paternal_349.1;source_gene=hg002_chrY_paternal_349;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_349;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_349.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_349.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;transcript_id=NA12877_ch_T0000422;gene_id=NA12877_ch_G0000166;Parent=NA12877_ch_T0000422;transcript_name=hg002_chrY_paternal_349.1;gene_name=FAM224A;ID=exon:NA12877_ch_T0000422:0;Name=FAM224A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18926628	18929127	.	+	.	source_transcript=hg002_chrY_paternal_349.1;source_transcript_name=hg002_chrY_paternal_349.1;source_gene=hg002_chrY_paternal_349;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_349;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_349.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_349.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;transcript_id=NA12877_ch_T0000422;gene_id=NA12877_ch_G0000166;Parent=NA12877_ch_T0000422;transcript_name=hg002_chrY_paternal_349.1;gene_name=FAM224A;ID=intron:NA12877_ch_T0000422:0;Name=FAM224A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18929128	18929245	.	+	.	source_transcript=hg002_chrY_paternal_349.1;source_transcript_name=hg002_chrY_paternal_349.1;source_gene=hg002_chrY_paternal_349;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_349;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_349.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_349.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;transcript_id=NA12877_ch_T0000422;gene_id=NA12877_ch_G0000166;Parent=NA12877_ch_T0000422;transcript_name=hg002_chrY_paternal_349.1;gene_name=FAM224A;ID=exon:NA12877_ch_T0000422:1;Name=FAM224A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18929246	18930580	.	+	.	source_transcript=hg002_chrY_paternal_349.1;source_transcript_name=hg002_chrY_paternal_349.1;source_gene=hg002_chrY_paternal_349;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_349;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_349.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_349.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;transcript_id=NA12877_ch_T0000422;gene_id=NA12877_ch_G0000166;Parent=NA12877_ch_T0000422;transcript_name=hg002_chrY_paternal_349.1;gene_name=FAM224A;ID=intron:NA12877_ch_T0000422:1;Name=FAM224A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18930581	18930764	.	+	.	source_transcript=hg002_chrY_paternal_349.1;source_transcript_name=hg002_chrY_paternal_349.1;source_gene=hg002_chrY_paternal_349;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_349;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_349.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_349.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;transcript_id=NA12877_ch_T0000422;gene_id=NA12877_ch_G0000166;Parent=NA12877_ch_T0000422;transcript_name=hg002_chrY_paternal_349.1;gene_name=FAM224A;ID=exon:NA12877_ch_T0000422:2;Name=FAM224A;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18942544	18951805	.	+	.	source_gene_common_name=LOC105377217;source_gene=hg002_chrY_paternal_346;gene_id=NA12877_ch_G0000167;gene_biotype=lncRNA;gene_name=LOC105377217;gene_sources=liftoff;ID=NA12877_ch_G0000167;Name=LOC105377217
NA12877_chrY	CAT	transcript	18942544	18951805	1000	+	.	source_transcript=hg002_chrY_paternal_346.1;source_transcript_name=hg002_chrY_paternal_346.1;source_gene=hg002_chrY_paternal_346;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_346;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_346.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_346.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377217;transcript_id=NA12877_ch_T0000423;gene_id=NA12877_ch_G0000167;Parent=NA12877_ch_G0000167;transcript_name=hg002_chrY_paternal_346.1;gene_name=LOC105377217;ID=NA12877_ch_T0000423;Name=LOC105377217
NA12877_chrY	CAT	exon	18942544	18947885	.	+	.	source_transcript=hg002_chrY_paternal_346.1;source_transcript_name=hg002_chrY_paternal_346.1;source_gene=hg002_chrY_paternal_346;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_346;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_346.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377217;transcript_id=NA12877_ch_T0000423;gene_id=NA12877_ch_G0000167;Parent=NA12877_ch_T0000423;transcript_name=hg002_chrY_paternal_346.1;gene_name=LOC105377217;ID=exon:NA12877_ch_T0000423:0;Name=LOC105377217;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18947886	18949099	.	+	.	source_transcript=hg002_chrY_paternal_346.1;source_transcript_name=hg002_chrY_paternal_346.1;source_gene=hg002_chrY_paternal_346;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_346;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_346.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377217;transcript_id=NA12877_ch_T0000423;gene_id=NA12877_ch_G0000167;Parent=NA12877_ch_T0000423;transcript_name=hg002_chrY_paternal_346.1;gene_name=LOC105377217;ID=intron:NA12877_ch_T0000423:0;Name=LOC105377217;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18949100	18949228	.	+	.	source_transcript=hg002_chrY_paternal_346.1;source_transcript_name=hg002_chrY_paternal_346.1;source_gene=hg002_chrY_paternal_346;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_346;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_346.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377217;transcript_id=NA12877_ch_T0000423;gene_id=NA12877_ch_G0000167;Parent=NA12877_ch_T0000423;transcript_name=hg002_chrY_paternal_346.1;gene_name=LOC105377217;ID=exon:NA12877_ch_T0000423:1;Name=LOC105377217;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18949229	18949938	.	+	.	source_transcript=hg002_chrY_paternal_346.1;source_transcript_name=hg002_chrY_paternal_346.1;source_gene=hg002_chrY_paternal_346;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_346;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_346.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377217;transcript_id=NA12877_ch_T0000423;gene_id=NA12877_ch_G0000167;Parent=NA12877_ch_T0000423;transcript_name=hg002_chrY_paternal_346.1;gene_name=LOC105377217;ID=intron:NA12877_ch_T0000423:1;Name=LOC105377217;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18949939	18951805	.	+	.	source_transcript=hg002_chrY_paternal_346.1;source_transcript_name=hg002_chrY_paternal_346.1;source_gene=hg002_chrY_paternal_346;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_346;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_346.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377217;transcript_id=NA12877_ch_T0000423;gene_id=NA12877_ch_G0000167;Parent=NA12877_ch_T0000423;transcript_name=hg002_chrY_paternal_346.1;gene_name=LOC105377217;ID=exon:NA12877_ch_T0000423:2;Name=LOC105377217;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	18989209	19004991	.	-	.	source_gene_common_name=FAM41AY1;source_gene=hg002_chrY_paternal_394;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;gene_id=NA12877_ch_G0000168;gene_biotype=lncRNA;gene_name=FAM41AY1;gene_sources=liftoff;ID=NA12877_ch_G0000168;Name=FAM41AY1
NA12877_chrY	CAT	transcript	18989209	19004991	1000	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_G0000168;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=NA12877_ch_T0000424;Name=FAM41AY1
NA12877_chrY	CAT	exon	18989209	18989935	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:NA12877_ch_T0000424:0;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18989936	18990017	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:NA12877_ch_T0000424:0;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18990018	18990239	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:NA12877_ch_T0000424:1;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18990240	18990451	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:NA12877_ch_T0000424:1;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18990452	18990639	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:NA12877_ch_T0000424:2;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18990640	18990932	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:NA12877_ch_T0000424:2;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18990933	18991142	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:NA12877_ch_T0000424:3;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18991143	18991416	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:NA12877_ch_T0000424:3;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18991417	18991510	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:NA12877_ch_T0000424:4;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18991511	18991619	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:NA12877_ch_T0000424:4;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18991620	18991790	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:NA12877_ch_T0000424:5;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18991791	18992383	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:NA12877_ch_T0000424:5;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18992384	18992477	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:NA12877_ch_T0000424:6;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18992478	18992724	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:NA12877_ch_T0000424:6;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	18992725	18992853	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:NA12877_ch_T0000424:7;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	18992854	19004188	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:NA12877_ch_T0000424:7;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19004189	19004238	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:NA12877_ch_T0000424:8;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19004239	19004833	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=intron:NA12877_ch_T0000424:8;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19004834	19004991	.	-	.	source_transcript=hg002_chrY_paternal_394.1;source_transcript_name=hg002_chrY_paternal_394.1;source_gene=hg002_chrY_paternal_394;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_394;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_394.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;alternative_source_transcripts=hg002_chrY_paternal_394.1,hg002_chrY_paternal_394.1;transcript_id=NA12877_ch_T0000424;gene_id=NA12877_ch_G0000168;Parent=NA12877_ch_T0000424;transcript_name=hg002_chrY_paternal_394.1;gene_name=FAM41AY1;ID=exon:NA12877_ch_T0000424:9;Name=FAM41AY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	19083990	19117805	.	+	.	source_gene_common_name=LOC124905304;source_gene=hg002_chrY_paternal_398;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;gene_id=NA12877_ch_G0000169;gene_biotype=lncRNA;gene_name=LOC124905304;gene_sources=liftoff;ID=NA12877_ch_G0000169;Name=LOC124905304
NA12877_chrY	CAT	transcript	19083990	19117805	1000	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_G0000169;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=NA12877_ch_T0000425;Name=LOC124905304
NA12877_chrY	CAT	exon	19083990	19084030	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:NA12877_ch_T0000425:0;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19084031	19086431	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:NA12877_ch_T0000425:0;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19086432	19086594	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:NA12877_ch_T0000425:1;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19086595	19087247	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:NA12877_ch_T0000425:1;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19087248	19087349	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:NA12877_ch_T0000425:2;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19087350	19089711	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:NA12877_ch_T0000425:2;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19089712	19089915	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:NA12877_ch_T0000425:3;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19089916	19091631	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:NA12877_ch_T0000425:3;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19091632	19091766	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:NA12877_ch_T0000425:4;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19091767	19100558	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:NA12877_ch_T0000425:4;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19100559	19100791	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:NA12877_ch_T0000425:5;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19100792	19100884	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:NA12877_ch_T0000425:5;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19100885	19100990	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:NA12877_ch_T0000425:6;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19100991	19106601	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:NA12877_ch_T0000425:6;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19106602	19106729	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:NA12877_ch_T0000425:7;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19106730	19115497	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=intron:NA12877_ch_T0000425:7;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19115498	19117805	.	+	.	source_transcript=hg002_chrY_paternal_398.1;source_transcript_name=hg002_chrY_paternal_398.1;source_gene=hg002_chrY_paternal_398;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_398;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_398.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_398.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905304;alternative_source_transcripts=hg002_chrY_paternal_398.1,hg002_chrY_paternal_398.1;transcript_id=NA12877_ch_T0000425;gene_id=NA12877_ch_G0000169;Parent=NA12877_ch_T0000425;transcript_name=hg002_chrY_paternal_398.1;gene_name=LOC124905304;ID=exon:NA12877_ch_T0000425:8;Name=LOC124905304;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	19129582	19188908	.	+	.	source_gene_common_name=HSFY1;source_gene=hg002_chrY_paternal_403;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;gene_id=NA12877_ch_G0000170;gene_biotype=protein_coding;gene_name=HSFY1;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000170;Name=HSFY1
NA12877_chrY	CAT	transcript	19129582	19148532	100	+	.	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000426;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_G0000170;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=NA12877_ch_T0000426;Name=HSFY1
NA12877_chrY	CAT	exon	19129582	19129776	.	+	.	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000426;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000426;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:NA12877_ch_T0000426:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19129751	19129776	.	+	0	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000426;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000426;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:NA12877_ch_T0000426:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	19129751	19129753	.	+	0	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000426;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000426;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=start_codon:NA12877_ch_T0000426;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19129777	19146972	.	+	.	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000426;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000426;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=intron:NA12877_ch_T0000426:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19146973	19147240	.	+	.	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000426;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000426;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:NA12877_ch_T0000426:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19146973	19147240	.	+	1	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000426;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000426;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:NA12877_ch_T0000426:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19147241	19147718	.	+	.	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000426;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000426;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=intron:NA12877_ch_T0000426:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19147719	19148532	.	+	.	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000426;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000426;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:NA12877_ch_T0000426:2;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19147719	19148411	.	+	0	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000426;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000426;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:NA12877_ch_T0000426:2;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	19148409	19148411	.	+	0	source_transcript=hg002_chrY_paternal_403.1;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.1,hg002_chrY_paternal_403.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000426;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000426;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=stop_codon:NA12877_ch_T0000426;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19146621	19148532	100	+	.	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000427;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_G0000170;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=NA12877_ch_T0000427;Name=HSFY1
NA12877_chrY	CAT	exon	19146621	19146874	.	+	.	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000427;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000427;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:NA12877_ch_T0000427:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19146864	19146874	.	+	0	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000427;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000427;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:NA12877_ch_T0000427:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	19146864	19146866	.	+	0	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000427;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000427;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=start_codon:NA12877_ch_T0000427;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19146875	19146972	.	+	.	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000427;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000427;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=intron:NA12877_ch_T0000427:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19146973	19147240	.	+	.	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000427;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000427;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:NA12877_ch_T0000427:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19146973	19147240	.	+	1	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000427;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000427;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:NA12877_ch_T0000427:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19147241	19147718	.	+	.	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000427;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000427;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=intron:NA12877_ch_T0000427:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19147719	19148532	.	+	.	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000427;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000427;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:NA12877_ch_T0000427:2;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19147719	19148411	.	+	0	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000427;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000427;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:NA12877_ch_T0000427:2;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	19148409	19148411	.	+	0	source_transcript=hg002_chrY_paternal_403.2;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.2,hg002_chrY_paternal_403.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000427;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000427;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=stop_codon:NA12877_ch_T0000427;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19146631	19188908	100	+	.	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000428;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_G0000170;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=NA12877_ch_T0000428;Name=HSFY1
NA12877_chrY	CAT	exon	19146631	19147240	.	+	.	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000428;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000428;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:NA12877_ch_T0000428:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19146728	19147240	.	+	0	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000428;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000428;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:NA12877_ch_T0000428:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	19146728	19146730	.	+	0	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000428;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000428;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=start_codon:NA12877_ch_T0000428;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19147241	19188480	.	+	.	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000428;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000428;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=intron:NA12877_ch_T0000428:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19188481	19188908	.	+	.	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000428;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000428;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:NA12877_ch_T0000428:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19188481	19188579	.	+	0	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000428;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000428;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:NA12877_ch_T0000428:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	19188577	19188579	.	+	0	source_transcript=hg002_chrY_paternal_403.4;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.4,hg002_chrY_paternal_403.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000428;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000428;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=stop_codon:NA12877_ch_T0000428;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19146631	19152016	1000	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000429;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_G0000170;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=NA12877_ch_T0000429;Name=HSFY1
NA12877_chrY	CAT	exon	19146631	19147240	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000429;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000429;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:NA12877_ch_T0000429:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19147241	19150053	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000429;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000429;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:NA12877_ch_T0000429:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19150054	19150163	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000429;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000429;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:NA12877_ch_T0000429:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19150164	19150726	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000429;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000429;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:NA12877_ch_T0000429:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19150727	19150813	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000429;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000429;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:NA12877_ch_T0000429:2;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19150814	19151860	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000429;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000429;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:NA12877_ch_T0000429:2;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19151861	19152016	.	+	.	source_transcript=hg002_chrY_paternal_403.3;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.3,hg002_chrY_paternal_403.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000429;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000429;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:NA12877_ch_T0000429:3;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19146631	19188908	1000	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000430;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_G0000170;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=NA12877_ch_T0000430;Name=HSFY1
NA12877_chrY	CAT	exon	19146631	19147240	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000430;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000430;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:NA12877_ch_T0000430:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19147241	19150053	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000430;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000430;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:NA12877_ch_T0000430:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19150054	19150163	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000430;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000430;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:NA12877_ch_T0000430:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19150164	19150726	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000430;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000430;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:NA12877_ch_T0000430:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19150727	19150813	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000430;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000430;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:NA12877_ch_T0000430:2;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19150814	19151860	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000430;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000430;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:NA12877_ch_T0000430:2;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19151861	19152015	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000430;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000430;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:NA12877_ch_T0000430:3;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19152016	19182617	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000430;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000430;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:NA12877_ch_T0000430:3;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19182618	19182703	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000430;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000430;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:NA12877_ch_T0000430:4;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19182704	19188480	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000430;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000430;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=intron:NA12877_ch_T0000430:4;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19188481	19188908	.	+	.	source_transcript=hg002_chrY_paternal_403.5;source_transcript_name=hg002_chrY_paternal_403.1;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_403.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.5,hg002_chrY_paternal_403.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000430;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000430;transcript_name=hg002_chrY_paternal_403.1;gene_name=HSFY1;ID=exon:NA12877_ch_T0000430:5;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19146660	19148532	100	+	.	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000431;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_G0000170;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=NA12877_ch_T0000431;Name=HSFY1
NA12877_chrY	CAT	exon	19146660	19147240	.	+	.	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000431;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000431;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:NA12877_ch_T0000431:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19146728	19147240	.	+	0	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000431;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000431;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:NA12877_ch_T0000431:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	19146728	19146730	.	+	0	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000431;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000431;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=start_codon:NA12877_ch_T0000431;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19147241	19147718	.	+	.	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000431;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000431;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=intron:NA12877_ch_T0000431:0;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19147719	19148532	.	+	.	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000431;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000431;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=exon:NA12877_ch_T0000431:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19147719	19148411	.	+	0	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000431;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000431;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=CDS:NA12877_ch_T0000431:1;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	19148409	19148411	.	+	0	source_transcript=hg002_chrY_paternal_403.6;source_transcript_name=hg002_chrY_paternal_403.6;source_gene=hg002_chrY_paternal_403;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_403;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_403.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_403.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=hg002_chrY_paternal_403.6,hg002_chrY_paternal_403.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000431;gene_id=NA12877_ch_G0000170;Parent=NA12877_ch_T0000431;transcript_name=hg002_chrY_paternal_403.6;gene_name=HSFY1;ID=stop_codon:NA12877_ch_T0000431;Name=HSFY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	19181151	19190466	.	-	.	source_gene_common_name=TTTY9B;source_gene=hg002_chrY_paternal_407;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;gene_id=NA12877_ch_G0000171;gene_biotype=lncRNA;gene_name=TTTY9B;gene_sources=liftoff;ID=NA12877_ch_G0000171;Name=TTTY9B
NA12877_chrY	CAT	transcript	19181151	19190466	1000	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=NA12877_ch_T0000432;gene_id=NA12877_ch_G0000171;Parent=NA12877_ch_G0000171;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=NA12877_ch_T0000432;Name=TTTY9B
NA12877_chrY	CAT	exon	19181151	19182293	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=NA12877_ch_T0000432;gene_id=NA12877_ch_G0000171;Parent=NA12877_ch_T0000432;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=exon:NA12877_ch_T0000432:0;Name=TTTY9B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19182294	19187356	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=NA12877_ch_T0000432;gene_id=NA12877_ch_G0000171;Parent=NA12877_ch_T0000432;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=intron:NA12877_ch_T0000432:0;Name=TTTY9B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19187357	19187493	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=NA12877_ch_T0000432;gene_id=NA12877_ch_G0000171;Parent=NA12877_ch_T0000432;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=exon:NA12877_ch_T0000432:1;Name=TTTY9B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19187494	19188075	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=NA12877_ch_T0000432;gene_id=NA12877_ch_G0000171;Parent=NA12877_ch_T0000432;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=intron:NA12877_ch_T0000432:1;Name=TTTY9B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19188076	19188189	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=NA12877_ch_T0000432;gene_id=NA12877_ch_G0000171;Parent=NA12877_ch_T0000432;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=exon:NA12877_ch_T0000432:2;Name=TTTY9B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19188190	19188550	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=NA12877_ch_T0000432;gene_id=NA12877_ch_G0000171;Parent=NA12877_ch_T0000432;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=intron:NA12877_ch_T0000432:2;Name=TTTY9B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19188551	19188651	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=NA12877_ch_T0000432;gene_id=NA12877_ch_G0000171;Parent=NA12877_ch_T0000432;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=exon:NA12877_ch_T0000432:3;Name=TTTY9B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19188652	19190324	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=NA12877_ch_T0000432;gene_id=NA12877_ch_G0000171;Parent=NA12877_ch_T0000432;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=intron:NA12877_ch_T0000432:3;Name=TTTY9B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19190325	19190466	.	-	.	source_transcript=hg002_chrY_paternal_407.1;source_transcript_name=hg002_chrY_paternal_407.1;source_gene=hg002_chrY_paternal_407;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_407;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_407.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_407.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;alternative_source_transcripts=hg002_chrY_paternal_407.1,hg002_chrY_paternal_407.1;transcript_id=NA12877_ch_T0000432;gene_id=NA12877_ch_G0000171;Parent=NA12877_ch_T0000432;transcript_name=hg002_chrY_paternal_407.1;gene_name=TTTY9B;ID=exon:NA12877_ch_T0000432:4;Name=TTTY9B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	19329841	19339156	.	+	.	source_gene_common_name=TTTY9A;source_gene=hg002_chrY_paternal_412;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;gene_id=NA12877_ch_G0000172;gene_biotype=lncRNA;gene_name=TTTY9A;gene_sources=liftoff;ID=NA12877_ch_G0000172;Name=TTTY9A
NA12877_chrY	CAT	transcript	19329841	19339156	1000	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=NA12877_ch_T0000433;gene_id=NA12877_ch_G0000172;Parent=NA12877_ch_G0000172;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=NA12877_ch_T0000433;Name=TTTY9A
NA12877_chrY	CAT	exon	19329841	19329982	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=NA12877_ch_T0000433;gene_id=NA12877_ch_G0000172;Parent=NA12877_ch_T0000433;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=exon:NA12877_ch_T0000433:0;Name=TTTY9A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19329983	19331655	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=NA12877_ch_T0000433;gene_id=NA12877_ch_G0000172;Parent=NA12877_ch_T0000433;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=intron:NA12877_ch_T0000433:0;Name=TTTY9A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19331656	19331756	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=NA12877_ch_T0000433;gene_id=NA12877_ch_G0000172;Parent=NA12877_ch_T0000433;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=exon:NA12877_ch_T0000433:1;Name=TTTY9A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19331757	19332117	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=NA12877_ch_T0000433;gene_id=NA12877_ch_G0000172;Parent=NA12877_ch_T0000433;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=intron:NA12877_ch_T0000433:1;Name=TTTY9A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19332118	19332231	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=NA12877_ch_T0000433;gene_id=NA12877_ch_G0000172;Parent=NA12877_ch_T0000433;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=exon:NA12877_ch_T0000433:2;Name=TTTY9A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19332232	19332813	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=NA12877_ch_T0000433;gene_id=NA12877_ch_G0000172;Parent=NA12877_ch_T0000433;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=intron:NA12877_ch_T0000433:2;Name=TTTY9A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19332814	19332950	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=NA12877_ch_T0000433;gene_id=NA12877_ch_G0000172;Parent=NA12877_ch_T0000433;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=exon:NA12877_ch_T0000433:3;Name=TTTY9A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19332951	19338013	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=NA12877_ch_T0000433;gene_id=NA12877_ch_G0000172;Parent=NA12877_ch_T0000433;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=intron:NA12877_ch_T0000433:3;Name=TTTY9A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19338014	19339156	.	+	.	source_transcript=hg002_chrY_paternal_412.1;source_transcript_name=hg002_chrY_paternal_412.1;source_gene=hg002_chrY_paternal_412;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_412;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_412.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_412.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;alternative_source_transcripts=hg002_chrY_paternal_412.1,hg002_chrY_paternal_412.1;transcript_id=NA12877_ch_T0000433;gene_id=NA12877_ch_G0000172;Parent=NA12877_ch_T0000433;transcript_name=hg002_chrY_paternal_412.1;gene_name=TTTY9A;ID=exon:NA12877_ch_T0000433:4;Name=TTTY9A;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	19331399	19390737	.	-	.	source_gene_common_name=HSFY2;source_gene=hg002_chrY_paternal_413;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;gene_id=NA12877_ch_G0000173;gene_biotype=protein_coding;gene_name=HSFY2;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000173;Name=HSFY2
NA12877_chrY	CAT	transcript	19331399	19373708	100	-	.	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000434;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_G0000173;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=NA12877_ch_T0000434;Name=HSFY2
NA12877_chrY	CAT	exon	19331399	19331826	.	-	.	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000434;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000434;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:NA12877_ch_T0000434:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19331728	19331826	.	-	0	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000434;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000434;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:NA12877_ch_T0000434:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	19331728	19331730	.	-	0	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000434;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000434;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=stop_codon:NA12877_ch_T0000434;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19331827	19373078	.	-	.	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000434;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000434;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:NA12877_ch_T0000434:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19373079	19373708	.	-	.	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000434;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000434;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:NA12877_ch_T0000434:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19373079	19373591	.	-	0	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000434;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000434;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:NA12877_ch_T0000434:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	19373589	19373591	.	-	0	source_transcript=hg002_chrY_paternal_413.1;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.1,hg002_chrY_paternal_413.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000434;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000434;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=start_codon:NA12877_ch_T0000434;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19331399	19373708	1000	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000435;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_G0000173;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=NA12877_ch_T0000435;Name=HSFY2
NA12877_chrY	CAT	exon	19331399	19331826	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000435;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000435;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=exon:NA12877_ch_T0000435:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19331827	19337603	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000435;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000435;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=intron:NA12877_ch_T0000435:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19337604	19337689	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000435;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000435;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=exon:NA12877_ch_T0000435:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19337690	19368303	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000435;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000435;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=intron:NA12877_ch_T0000435:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19368304	19368458	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000435;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000435;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=exon:NA12877_ch_T0000435:2;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19368459	19369505	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000435;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000435;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=intron:NA12877_ch_T0000435:2;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19369506	19369592	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000435;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000435;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=exon:NA12877_ch_T0000435:3;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19369593	19370155	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000435;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000435;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=intron:NA12877_ch_T0000435:3;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19370156	19370265	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000435;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000435;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=exon:NA12877_ch_T0000435:4;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19370266	19373078	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000435;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000435;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=intron:NA12877_ch_T0000435:4;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19373079	19373708	.	-	.	source_transcript=hg002_chrY_paternal_413.2;source_transcript_name=hg002_chrY_paternal_413.1;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_413.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.2,hg002_chrY_paternal_413.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000435;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000435;transcript_name=hg002_chrY_paternal_413.1;gene_name=HSFY2;ID=exon:NA12877_ch_T0000435:5;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19369481	19373708	100	-	.	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000436;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_G0000173;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=NA12877_ch_T0000436;Name=HSFY2
NA12877_chrY	CAT	exon	19369481	19369592	.	-	.	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000436;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000436;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:NA12877_ch_T0000436:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19369571	19369592	.	-	1	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000436;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000436;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:NA12877_ch_T0000436:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	19369571	19369573	.	-	0	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000436;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000436;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=stop_codon:NA12877_ch_T0000436;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19369593	19370155	.	-	.	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000436;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000436;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:NA12877_ch_T0000436:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19370156	19370265	.	-	.	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000436;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000436;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:NA12877_ch_T0000436:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19370156	19370265	.	-	0	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000436;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000436;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:NA12877_ch_T0000436:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19370266	19373078	.	-	.	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000436;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000436;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:NA12877_ch_T0000436:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19373079	19373708	.	-	.	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000436;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000436;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:NA12877_ch_T0000436:2;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19373079	19373591	.	-	0	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000436;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000436;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:NA12877_ch_T0000436:2;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	19373589	19373591	.	-	0	source_transcript=hg002_chrY_paternal_413.3;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.3,hg002_chrY_paternal_413.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000436;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000436;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=start_codon:NA12877_ch_T0000436;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19371787	19373699	100	-	.	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000437;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_G0000173;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=NA12877_ch_T0000437;Name=HSFY2
NA12877_chrY	CAT	exon	19371787	19372600	.	-	.	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000437;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000437;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:NA12877_ch_T0000437:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19371908	19372600	.	-	0	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000437;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000437;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:NA12877_ch_T0000437:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	19371908	19371910	.	-	0	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000437;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000437;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=stop_codon:NA12877_ch_T0000437;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19372601	19373078	.	-	.	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000437;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000437;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:NA12877_ch_T0000437:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19373079	19373346	.	-	.	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000437;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000437;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:NA12877_ch_T0000437:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19373079	19373346	.	-	1	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000437;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000437;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:NA12877_ch_T0000437:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19373347	19373444	.	-	.	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000437;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000437;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:NA12877_ch_T0000437:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19373445	19373699	.	-	.	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000437;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000437;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:NA12877_ch_T0000437:2;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19373445	19373455	.	-	0	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000437;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000437;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:NA12877_ch_T0000437:2;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	19373453	19373455	.	-	0	source_transcript=hg002_chrY_paternal_413.4;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.4,hg002_chrY_paternal_413.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000437;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000437;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=start_codon:NA12877_ch_T0000437;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19371787	19373708	100	-	.	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000438;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_G0000173;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=NA12877_ch_T0000438;Name=HSFY2
NA12877_chrY	CAT	exon	19371787	19372600	.	-	.	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000438;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000438;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:NA12877_ch_T0000438:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19371908	19372600	.	-	0	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000438;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000438;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:NA12877_ch_T0000438:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	19371908	19371910	.	-	0	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000438;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000438;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=stop_codon:NA12877_ch_T0000438;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19372601	19373078	.	-	.	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000438;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000438;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:NA12877_ch_T0000438:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19373079	19373708	.	-	.	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000438;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000438;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:NA12877_ch_T0000438:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19373079	19373591	.	-	0	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000438;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000438;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:NA12877_ch_T0000438:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	19373589	19373591	.	-	0	source_transcript=hg002_chrY_paternal_413.5;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.5,hg002_chrY_paternal_413.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000438;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000438;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=start_codon:NA12877_ch_T0000438;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19371787	19390737	100	-	.	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000439;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_G0000173;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=NA12877_ch_T0000439;Name=HSFY2
NA12877_chrY	CAT	exon	19371787	19372600	.	-	.	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000439;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000439;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:NA12877_ch_T0000439:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19371908	19372600	.	-	0	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000439;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000439;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:NA12877_ch_T0000439:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	19371908	19371910	.	-	0	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000439;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000439;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=stop_codon:NA12877_ch_T0000439;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19372601	19373078	.	-	.	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000439;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000439;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:NA12877_ch_T0000439:0;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19373079	19373346	.	-	.	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000439;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000439;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:NA12877_ch_T0000439:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19373079	19373346	.	-	1	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000439;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000439;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:NA12877_ch_T0000439:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19373347	19390542	.	-	.	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000439;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000439;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=intron:NA12877_ch_T0000439:1;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19390543	19390737	.	-	.	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000439;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000439;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=exon:NA12877_ch_T0000439:2;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	19390543	19390568	.	-	0	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000439;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000439;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=CDS:NA12877_ch_T0000439:2;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	19390566	19390568	.	-	0	source_transcript=hg002_chrY_paternal_413.6;source_transcript_name=hg002_chrY_paternal_413.6;source_gene=hg002_chrY_paternal_413;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_413;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_413.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_413.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=hg002_chrY_paternal_413.6,hg002_chrY_paternal_413.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000439;gene_id=NA12877_ch_G0000173;Parent=NA12877_ch_T0000439;transcript_name=hg002_chrY_paternal_413.6;gene_name=HSFY2;ID=start_codon:NA12877_ch_T0000439;Name=HSFY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	19402513	19436376	.	-	.	source_gene_common_name=LOC124905305;source_gene=hg002_chrY_paternal_418;gene_id=NA12877_ch_G0000174;gene_biotype=lncRNA;gene_name=LOC124905305;gene_sources=liftoff;ID=NA12877_ch_G0000174;Name=LOC124905305
NA12877_chrY	CAT	transcript	19402513	19436376	1000	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_G0000174;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=NA12877_ch_T0000440;Name=LOC124905305
NA12877_chrY	CAT	exon	19402513	19404820	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000440;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000440:0;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19404821	19419327	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000440;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:NA12877_ch_T0000440:0;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19419328	19419759	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000440;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000440:1;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19419760	19428561	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000440;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:NA12877_ch_T0000440:1;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19428562	19428696	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000440;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000440:2;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19428697	19430412	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000440;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:NA12877_ch_T0000440:2;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19430413	19430616	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000440;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000440:3;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19430617	19432978	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000440;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:NA12877_ch_T0000440:3;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19432979	19433080	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000440;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000440:4;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19433081	19433733	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000440;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:NA12877_ch_T0000440:4;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19433734	19433896	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000440;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000440:5;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19433897	19436297	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000440;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:NA12877_ch_T0000440:5;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19436298	19436376	.	-	.	source_transcript=hg002_chrY_paternal_418.2;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000440;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000440;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000440:6;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19402513	19436374	1000	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_G0000174;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=NA12877_ch_T0000441;Name=LOC124905305
NA12877_chrY	CAT	exon	19402513	19404820	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000441:0;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19404821	19413588	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:NA12877_ch_T0000441:0;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19413589	19413716	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000441:1;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19413717	19419327	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:NA12877_ch_T0000441:1;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19419328	19419759	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000441:2;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19419760	19428561	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:NA12877_ch_T0000441:2;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19428562	19428696	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000441:3;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19428697	19430412	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:NA12877_ch_T0000441:3;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19430413	19430616	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000441:4;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19430617	19432978	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:NA12877_ch_T0000441:4;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19432979	19433080	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000441:5;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19433081	19433733	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:NA12877_ch_T0000441:5;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19433734	19433896	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000441:6;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19433897	19436297	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=intron:NA12877_ch_T0000441:6;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19436298	19436374	.	-	.	source_transcript=hg002_chrY_paternal_418.1;source_transcript_name=hg002_chrY_paternal_418.1;source_gene=hg002_chrY_paternal_418;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_418;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_418.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_418.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905305;transcript_id=NA12877_ch_T0000441;gene_id=NA12877_ch_G0000174;Parent=NA12877_ch_T0000441;transcript_name=hg002_chrY_paternal_418.1;gene_name=LOC124905305;ID=exon:NA12877_ch_T0000441:7;Name=LOC124905305;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	19433707	19433868	.	-	.	source_gene_common_name=LOC124905307;source_gene=hg002_chrY_paternal_422;gene_id=NA12877_ch_G0000175;gene_biotype=snRNA;gene_name=LOC124905307;gene_sources=liftoff;ID=NA12877_ch_G0000175;Name=LOC124905307
NA12877_chrY	CAT	transcript	19433707	19433868	1000	-	.	source_transcript=hg002_chrY_paternal_422.1;source_transcript_name=hg002_chrY_paternal_422.1;source_gene=hg002_chrY_paternal_422;source_gene_biotype=snRNA;original_gene_id=hg002_chrY_paternal_422;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=hg002_chrY_paternal_422.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_422.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905307;transcript_id=NA12877_ch_T0000442;gene_id=NA12877_ch_G0000175;Parent=NA12877_ch_G0000175;transcript_name=hg002_chrY_paternal_422.1;gene_name=LOC124905307;ID=NA12877_ch_T0000442;Name=LOC124905307
NA12877_chrY	CAT	exon	19433707	19433868	.	-	.	source_transcript=hg002_chrY_paternal_422.1;source_transcript_name=hg002_chrY_paternal_422.1;source_gene=hg002_chrY_paternal_422;source_gene_biotype=snRNA;original_gene_id=hg002_chrY_paternal_422;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=hg002_chrY_paternal_422.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_422.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905307;transcript_id=NA12877_ch_T0000442;gene_id=NA12877_ch_G0000175;Parent=NA12877_ch_T0000442;transcript_name=hg002_chrY_paternal_422.1;gene_name=LOC124905307;ID=exon:NA12877_ch_T0000442:0;Name=LOC124905307;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	19472484	19677533	.	-	.	source_gene_common_name=TTTY14;source_gene=hg002_chrY_paternal_425;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;gene_id=NA12877_ch_G0000176;gene_biotype=lncRNA;gene_name=TTTY14;gene_sources=liftoff;ID=NA12877_ch_G0000176;Name=TTTY14
NA12877_chrY	CAT	transcript	19472484	19675989	1000	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=NA12877_ch_T0000443;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_G0000176;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=NA12877_ch_T0000443;Name=TTTY14
NA12877_chrY	CAT	exon	19472484	19472817	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=NA12877_ch_T0000443;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000443;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000443:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19472818	19477050	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=NA12877_ch_T0000443;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000443;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000443:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19477051	19477188	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=NA12877_ch_T0000443;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000443;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000443:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19477189	19512353	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=NA12877_ch_T0000443;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000443;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000443:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19512354	19512468	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=NA12877_ch_T0000443;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000443;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000443:2;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19512469	19668709	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=NA12877_ch_T0000443;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000443;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000443:2;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19668710	19668784	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=NA12877_ch_T0000443;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000443;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000443:3;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19668785	19675926	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=NA12877_ch_T0000443;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000443;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000443:3;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19675927	19675989	.	-	.	source_transcript=hg002_chrY_paternal_425.1;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.1,hg002_chrY_paternal_425.1;transcript_id=NA12877_ch_T0000443;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000443;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000443:4;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19472484	19676015	1000	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=NA12877_ch_T0000444;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_G0000176;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=NA12877_ch_T0000444;Name=TTTY14
NA12877_chrY	CAT	exon	19472484	19472817	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=NA12877_ch_T0000444;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000444;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000444:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19472818	19477050	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=NA12877_ch_T0000444;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000444;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000444:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19477051	19477188	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=NA12877_ch_T0000444;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000444;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000444:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19477189	19673484	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=NA12877_ch_T0000444;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000444;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000444:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19673485	19673547	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=NA12877_ch_T0000444;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000444;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000444:2;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19673548	19675926	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=NA12877_ch_T0000444;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000444;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000444:2;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19675927	19676015	.	-	.	source_transcript=hg002_chrY_paternal_425.2;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.2,hg002_chrY_paternal_425.2;transcript_id=NA12877_ch_T0000444;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000444;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000444:3;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19472484	19677533	1000	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=NA12877_ch_T0000445;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_G0000176;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=NA12877_ch_T0000445;Name=TTTY14
NA12877_chrY	CAT	exon	19472484	19472817	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=NA12877_ch_T0000445;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000445;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000445:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19472818	19532727	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=NA12877_ch_T0000445;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000445;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000445:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19532728	19532826	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=NA12877_ch_T0000445;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000445;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000445:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19532827	19533341	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=NA12877_ch_T0000445;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000445;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000445:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19533342	19533460	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=NA12877_ch_T0000445;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000445;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000445:2;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19533461	19668709	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=NA12877_ch_T0000445;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000445;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000445:2;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19668710	19668784	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=NA12877_ch_T0000445;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000445;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000445:3;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19668785	19677030	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=NA12877_ch_T0000445;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000445;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000445:3;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19677031	19677533	.	-	.	source_transcript=hg002_chrY_paternal_425.3;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.3,hg002_chrY_paternal_425.3;transcript_id=NA12877_ch_T0000445;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000445;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000445:4;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19472484	19677533	1000	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=NA12877_ch_T0000446;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_G0000176;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=NA12877_ch_T0000446;Name=TTTY14
NA12877_chrY	CAT	exon	19472484	19472817	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=NA12877_ch_T0000446;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000446;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000446:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19472818	19477050	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=NA12877_ch_T0000446;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000446;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000446:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19477051	19477188	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=NA12877_ch_T0000446;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000446;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000446:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19477189	19668709	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=NA12877_ch_T0000446;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000446;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000446:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19668710	19668784	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=NA12877_ch_T0000446;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000446;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000446:2;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19668785	19677030	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=NA12877_ch_T0000446;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000446;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000446:2;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19677031	19677533	.	-	.	source_transcript=hg002_chrY_paternal_425.4;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.4,hg002_chrY_paternal_425.4;transcript_id=NA12877_ch_T0000446;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000446;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000446:3;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19472484	19677533	1000	-	.	source_transcript=hg002_chrY_paternal_425.5;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.5,hg002_chrY_paternal_425.5;transcript_id=NA12877_ch_T0000447;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_G0000176;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=NA12877_ch_T0000447;Name=TTTY14
NA12877_chrY	CAT	exon	19472484	19472817	.	-	.	source_transcript=hg002_chrY_paternal_425.5;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.5,hg002_chrY_paternal_425.5;transcript_id=NA12877_ch_T0000447;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000447;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000447:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19472818	19477050	.	-	.	source_transcript=hg002_chrY_paternal_425.5;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.5,hg002_chrY_paternal_425.5;transcript_id=NA12877_ch_T0000447;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000447;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000447:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19477051	19477188	.	-	.	source_transcript=hg002_chrY_paternal_425.5;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.5,hg002_chrY_paternal_425.5;transcript_id=NA12877_ch_T0000447;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000447;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000447:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19477189	19677030	.	-	.	source_transcript=hg002_chrY_paternal_425.5;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.5,hg002_chrY_paternal_425.5;transcript_id=NA12877_ch_T0000447;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000447;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000447:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19677031	19677533	.	-	.	source_transcript=hg002_chrY_paternal_425.5;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.5,hg002_chrY_paternal_425.5;transcript_id=NA12877_ch_T0000447;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000447;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000447:2;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19531992	19676015	1000	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=NA12877_ch_T0000448;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_G0000176;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=NA12877_ch_T0000448;Name=TTTY14
NA12877_chrY	CAT	exon	19531992	19532826	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=NA12877_ch_T0000448;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000448;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000448:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19532827	19644527	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=NA12877_ch_T0000448;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000448;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000448:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19644528	19644681	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=NA12877_ch_T0000448;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000448;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000448:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19644682	19645227	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=NA12877_ch_T0000448;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000448;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000448:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19645228	19645277	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=NA12877_ch_T0000448;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000448;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000448:2;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19645278	19668709	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=NA12877_ch_T0000448;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000448;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000448:2;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19668710	19668784	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=NA12877_ch_T0000448;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000448;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000448:3;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19668785	19675926	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=NA12877_ch_T0000448;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000448;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000448:3;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19675927	19676015	.	-	.	source_transcript=hg002_chrY_paternal_425.6;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.6,hg002_chrY_paternal_425.6;transcript_id=NA12877_ch_T0000448;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000448;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000448:4;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19532436	19675989	1000	-	.	source_transcript=hg002_chrY_paternal_425.7;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.7;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.7,hg002_chrY_paternal_425.7;transcript_id=NA12877_ch_T0000449;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_G0000176;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=NA12877_ch_T0000449;Name=TTTY14
NA12877_chrY	CAT	exon	19532436	19532826	.	-	.	source_transcript=hg002_chrY_paternal_425.7;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.7,hg002_chrY_paternal_425.7;transcript_id=NA12877_ch_T0000449;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000449;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000449:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19532827	19668709	.	-	.	source_transcript=hg002_chrY_paternal_425.7;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.7,hg002_chrY_paternal_425.7;transcript_id=NA12877_ch_T0000449;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000449;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000449:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19668710	19668784	.	-	.	source_transcript=hg002_chrY_paternal_425.7;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.7,hg002_chrY_paternal_425.7;transcript_id=NA12877_ch_T0000449;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000449;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000449:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19668785	19675926	.	-	.	source_transcript=hg002_chrY_paternal_425.7;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.7,hg002_chrY_paternal_425.7;transcript_id=NA12877_ch_T0000449;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000449;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000449:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19675927	19675989	.	-	.	source_transcript=hg002_chrY_paternal_425.7;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.7,hg002_chrY_paternal_425.7;transcript_id=NA12877_ch_T0000449;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000449;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000449:2;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	19532436	19677533	1000	-	.	source_transcript=hg002_chrY_paternal_425.8;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.8;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.8,hg002_chrY_paternal_425.8;transcript_id=NA12877_ch_T0000450;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_G0000176;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=NA12877_ch_T0000450;Name=TTTY14
NA12877_chrY	CAT	exon	19532436	19532826	.	-	.	source_transcript=hg002_chrY_paternal_425.8;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.8,hg002_chrY_paternal_425.8;transcript_id=NA12877_ch_T0000450;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000450;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000450:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19532827	19677030	.	-	.	source_transcript=hg002_chrY_paternal_425.8;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.8,hg002_chrY_paternal_425.8;transcript_id=NA12877_ch_T0000450;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000450;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=intron:NA12877_ch_T0000450:0;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19677031	19677533	.	-	.	source_transcript=hg002_chrY_paternal_425.8;source_transcript_name=hg002_chrY_paternal_425.1;source_gene=hg002_chrY_paternal_425;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_425;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_425.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_425.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY14;alternative_source_transcripts=hg002_chrY_paternal_425.8,hg002_chrY_paternal_425.8;transcript_id=NA12877_ch_T0000450;gene_id=NA12877_ch_G0000176;Parent=NA12877_ch_T0000450;transcript_name=hg002_chrY_paternal_425.1;gene_name=TTTY14;ID=exon:NA12877_ch_T0000450:1;Name=TTTY14;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	19679842	19688864	.	+	.	source_gene_common_name=LOC124905306;source_gene=hg002_chrY_paternal_429;alternative_source_transcripts=hg002_chrY_paternal_429.1,hg002_chrY_paternal_429.1;gene_id=NA12877_ch_G0000177;gene_biotype=lncRNA;gene_name=LOC124905306;gene_sources=liftoff;ID=NA12877_ch_G0000177;Name=LOC124905306
NA12877_chrY	CAT	transcript	19679842	19688864	1000	+	.	source_transcript=hg002_chrY_paternal_429.1;source_transcript_name=hg002_chrY_paternal_429.1;source_gene=hg002_chrY_paternal_429;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_429;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_429.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_429.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905306;alternative_source_transcripts=hg002_chrY_paternal_429.1,hg002_chrY_paternal_429.1;transcript_id=NA12877_ch_T0000451;gene_id=NA12877_ch_G0000177;Parent=NA12877_ch_G0000177;transcript_name=hg002_chrY_paternal_429.1;gene_name=LOC124905306;ID=NA12877_ch_T0000451;Name=LOC124905306
NA12877_chrY	CAT	exon	19679842	19680711	.	+	.	source_transcript=hg002_chrY_paternal_429.1;source_transcript_name=hg002_chrY_paternal_429.1;source_gene=hg002_chrY_paternal_429;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_429;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_429.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905306;alternative_source_transcripts=hg002_chrY_paternal_429.1,hg002_chrY_paternal_429.1;transcript_id=NA12877_ch_T0000451;gene_id=NA12877_ch_G0000177;Parent=NA12877_ch_T0000451;transcript_name=hg002_chrY_paternal_429.1;gene_name=LOC124905306;ID=exon:NA12877_ch_T0000451:0;Name=LOC124905306;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	19680712	19686485	.	+	.	source_transcript=hg002_chrY_paternal_429.1;source_transcript_name=hg002_chrY_paternal_429.1;source_gene=hg002_chrY_paternal_429;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_429;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_429.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905306;alternative_source_transcripts=hg002_chrY_paternal_429.1,hg002_chrY_paternal_429.1;transcript_id=NA12877_ch_T0000451;gene_id=NA12877_ch_G0000177;Parent=NA12877_ch_T0000451;transcript_name=hg002_chrY_paternal_429.1;gene_name=LOC124905306;ID=intron:NA12877_ch_T0000451:0;Name=LOC124905306;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	19686486	19688864	.	+	.	source_transcript=hg002_chrY_paternal_429.1;source_transcript_name=hg002_chrY_paternal_429.1;source_gene=hg002_chrY_paternal_429;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_429;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_429.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124905306;alternative_source_transcripts=hg002_chrY_paternal_429.1,hg002_chrY_paternal_429.1;transcript_id=NA12877_ch_T0000451;gene_id=NA12877_ch_G0000177;Parent=NA12877_ch_T0000451;transcript_name=hg002_chrY_paternal_429.1;gene_name=LOC124905306;ID=exon:NA12877_ch_T0000451:1;Name=LOC124905306;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	20055423	20103140	.	-	.	source_gene_common_name=BCORP1;source_gene=hg002_chrY_paternal_431;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;gene_id=NA12877_ch_G0000178;gene_biotype=transcribed_pseudogene;gene_name=BCORP1;gene_sources=liftoff;ID=NA12877_ch_G0000178;Name=BCORP1
NA12877_chrY	CAT	transcript	20055423	20103140	1000	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_G0000178;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=NA12877_ch_T0000452;Name=BCORP1
NA12877_chrY	CAT	exon	20055423	20056856	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000452:0;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20056857	20058910	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000452:0;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20058911	20059066	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000452:1;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20059067	20059275	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000452:1;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20059276	20059353	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000452:2;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20059354	20065092	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000452:2;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20065093	20065214	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000452:3;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20065215	20066442	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000452:3;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20066443	20067361	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000452:4;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20067362	20073891	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000452:4;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20073892	20074131	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000452:5;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20074132	20074626	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000452:5;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20074627	20074890	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000452:6;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20074891	20080155	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000452:6;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20080156	20080281	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000452:7;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20080282	20103018	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000452:7;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20103019	20103140	.	-	.	source_transcript=hg002_chrY_paternal_431.1;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.1,hg002_chrY_paternal_431.1;transcript_id=NA12877_ch_T0000452;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000452;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000452:8;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20055423	20103140	1000	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_G0000178;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=NA12877_ch_T0000453;Name=BCORP1
NA12877_chrY	CAT	exon	20055423	20056856	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000453:0;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20056857	20057048	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000453:0;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20057049	20057109	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000453:1;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20057110	20058910	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000453:1;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20058911	20059066	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000453:2;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20059067	20059275	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000453:2;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20059276	20059353	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000453:3;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20059354	20059945	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000453:3;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20059946	20060091	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000453:4;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20060092	20065092	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000453:4;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20065093	20065214	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000453:5;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20065215	20066442	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000453:5;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20066443	20067361	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000453:6;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20067362	20073891	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000453:6;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20073892	20074131	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000453:7;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20074132	20074626	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000453:7;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20074627	20074890	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000453:8;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20074891	20080155	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000453:8;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20080156	20080281	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000453:9;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20080282	20103018	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=intron:NA12877_ch_T0000453:9;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20103019	20103140	.	-	.	source_transcript=hg002_chrY_paternal_431.2;source_transcript_name=hg002_chrY_paternal_431.1;source_gene=hg002_chrY_paternal_431;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_431;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_431.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_431.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;alternative_source_transcripts=hg002_chrY_paternal_431.2,hg002_chrY_paternal_431.2;transcript_id=NA12877_ch_T0000453;gene_id=NA12877_ch_G0000178;Parent=NA12877_ch_T0000453;transcript_name=hg002_chrY_paternal_431.1;gene_name=BCORP1;ID=exon:NA12877_ch_T0000453:10;Name=BCORP1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	20081603	20083442	.	-	.	source_gene_common_name=LOC102723934;source_gene=hg002_chrY_paternal_432;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;gene_id=NA12877_ch_G0000179;gene_biotype=protein_coding;gene_name=LOC102723934;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000179;Name=LOC102723934
NA12877_chrY	CAT	transcript	20081603	20083442	100	-	.	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000454;gene_id=NA12877_ch_G0000179;Parent=NA12877_ch_G0000179;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=NA12877_ch_T0000454;Name=LOC102723934
NA12877_chrY	CAT	exon	20081603	20081991	.	-	.	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000454;gene_id=NA12877_ch_G0000179;Parent=NA12877_ch_T0000454;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=exon:NA12877_ch_T0000454:0;Name=LOC102723934;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20081603	20081991	.	-	2	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000454;gene_id=NA12877_ch_G0000179;Parent=NA12877_ch_T0000454;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=CDS:NA12877_ch_T0000454:0;Name=LOC102723934;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20081603	20081605	.	-	0	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000454;gene_id=NA12877_ch_G0000179;Parent=NA12877_ch_T0000454;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=stop_codon:NA12877_ch_T0000454;Name=LOC102723934;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20081992	20082303	.	-	.	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000454;gene_id=NA12877_ch_G0000179;Parent=NA12877_ch_T0000454;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=intron:NA12877_ch_T0000454:0;Name=LOC102723934;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20082304	20082315	.	-	.	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000454;gene_id=NA12877_ch_G0000179;Parent=NA12877_ch_T0000454;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=exon:NA12877_ch_T0000454:1;Name=LOC102723934;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20082304	20082315	.	-	2	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000454;gene_id=NA12877_ch_G0000179;Parent=NA12877_ch_T0000454;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=CDS:NA12877_ch_T0000454:1;Name=LOC102723934;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20082316	20082395	.	-	.	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000454;gene_id=NA12877_ch_G0000179;Parent=NA12877_ch_T0000454;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=intron:NA12877_ch_T0000454:1;Name=LOC102723934;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20082396	20083442	.	-	.	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000454;gene_id=NA12877_ch_G0000179;Parent=NA12877_ch_T0000454;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=exon:NA12877_ch_T0000454:2;Name=LOC102723934;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20082396	20083419	.	-	0	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000454;gene_id=NA12877_ch_G0000179;Parent=NA12877_ch_T0000454;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=CDS:NA12877_ch_T0000454:2;Name=LOC102723934;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20083417	20083419	.	-	0	source_transcript=hg002_chrY_paternal_432.1;source_transcript_name=hg002_chrY_paternal_432.1;source_gene=hg002_chrY_paternal_432;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_432;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_432.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_432.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723934;alternative_source_transcripts=hg002_chrY_paternal_432.1,hg002_chrY_paternal_432.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000454;gene_id=NA12877_ch_G0000179;Parent=NA12877_ch_T0000454;transcript_name=hg002_chrY_paternal_432.1;gene_name=LOC102723934;ID=start_codon:NA12877_ch_T0000454;Name=LOC102723934;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	20153886	20166996	.	-	.	source_gene_common_name=LOC105377223;source_gene=hg002_chrY_paternal_433;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;gene_id=NA12877_ch_G0000180;gene_biotype=lncRNA;gene_name=LOC105377223;gene_sources=liftoff;ID=NA12877_ch_G0000180;Name=LOC105377223
NA12877_chrY	CAT	transcript	20153886	20166996	1000	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=NA12877_ch_T0000455;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_G0000180;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=NA12877_ch_T0000455;Name=LOC105377223
NA12877_chrY	CAT	exon	20153886	20156799	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=NA12877_ch_T0000455;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000455;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000455:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20156800	20157216	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=NA12877_ch_T0000455;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000455;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000455:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20157217	20157276	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=NA12877_ch_T0000455;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000455;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000455:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20157277	20158010	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=NA12877_ch_T0000455;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000455;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000455:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20158011	20158127	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=NA12877_ch_T0000455;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000455;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000455:2;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20158128	20166968	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=NA12877_ch_T0000455;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000455;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000455:2;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20166969	20166996	.	-	.	source_transcript=hg002_chrY_paternal_433.1;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.1,hg002_chrY_paternal_433.1;transcript_id=NA12877_ch_T0000455;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000455;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000455:3;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20153886	20166996	1000	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=NA12877_ch_T0000456;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_G0000180;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=NA12877_ch_T0000456;Name=LOC105377223
NA12877_chrY	CAT	exon	20153886	20156799	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=NA12877_ch_T0000456;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000456;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000456:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20156800	20157216	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=NA12877_ch_T0000456;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000456;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000456:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20157217	20157276	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=NA12877_ch_T0000456;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000456;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000456:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20157277	20158026	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=NA12877_ch_T0000456;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000456;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000456:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20158027	20158127	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=NA12877_ch_T0000456;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000456;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000456:2;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20158128	20166968	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=NA12877_ch_T0000456;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000456;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000456:2;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20166969	20166996	.	-	.	source_transcript=hg002_chrY_paternal_433.2;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.2,hg002_chrY_paternal_433.2;transcript_id=NA12877_ch_T0000456;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000456;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000456:3;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20153886	20166996	1000	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=NA12877_ch_T0000457;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_G0000180;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=NA12877_ch_T0000457;Name=LOC105377223
NA12877_chrY	CAT	exon	20153886	20156799	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=NA12877_ch_T0000457;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000457;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000457:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20156800	20157216	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=NA12877_ch_T0000457;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000457;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000457:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20157217	20157276	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=NA12877_ch_T0000457;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000457;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000457:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20157277	20158010	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=NA12877_ch_T0000457;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000457;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000457:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20158011	20158127	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=NA12877_ch_T0000457;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000457;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000457:2;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20158128	20159326	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=NA12877_ch_T0000457;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000457;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000457:2;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20159327	20166996	.	-	.	source_transcript=hg002_chrY_paternal_433.3;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.3,hg002_chrY_paternal_433.3;transcript_id=NA12877_ch_T0000457;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000457;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000457:3;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20153886	20166996	1000	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=NA12877_ch_T0000458;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_G0000180;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=NA12877_ch_T0000458;Name=LOC105377223
NA12877_chrY	CAT	exon	20153886	20155541	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=NA12877_ch_T0000458;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000458;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000458:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20155542	20157216	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=NA12877_ch_T0000458;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000458;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000458:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20157217	20157276	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=NA12877_ch_T0000458;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000458;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000458:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20157277	20158026	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=NA12877_ch_T0000458;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000458;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000458:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20158027	20158127	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=NA12877_ch_T0000458;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000458;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000458:2;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20158128	20159326	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=NA12877_ch_T0000458;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000458;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000458:2;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20159327	20166996	.	-	.	source_transcript=hg002_chrY_paternal_433.4;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.4,hg002_chrY_paternal_433.4;transcript_id=NA12877_ch_T0000458;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000458;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000458:3;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20153886	20166996	1000	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=NA12877_ch_T0000459;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_G0000180;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=NA12877_ch_T0000459;Name=LOC105377223
NA12877_chrY	CAT	exon	20153886	20155541	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=NA12877_ch_T0000459;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000459;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000459:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20155542	20157216	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=NA12877_ch_T0000459;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000459;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000459:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20157217	20157276	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=NA12877_ch_T0000459;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000459;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000459:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20157277	20158010	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=NA12877_ch_T0000459;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000459;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000459:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20158011	20158127	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=NA12877_ch_T0000459;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000459;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000459:2;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20158128	20166968	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=NA12877_ch_T0000459;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000459;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000459:2;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20166969	20166996	.	-	.	source_transcript=hg002_chrY_paternal_433.5;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.5,hg002_chrY_paternal_433.5;transcript_id=NA12877_ch_T0000459;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000459;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000459:3;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20153886	20166996	1000	-	.	source_transcript=hg002_chrY_paternal_433.6;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.6,hg002_chrY_paternal_433.6;transcript_id=NA12877_ch_T0000460;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_G0000180;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=NA12877_ch_T0000460;Name=LOC105377223
NA12877_chrY	CAT	exon	20153886	20157276	.	-	.	source_transcript=hg002_chrY_paternal_433.6;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.6,hg002_chrY_paternal_433.6;transcript_id=NA12877_ch_T0000460;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000460;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000460:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20157277	20158010	.	-	.	source_transcript=hg002_chrY_paternal_433.6;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.6,hg002_chrY_paternal_433.6;transcript_id=NA12877_ch_T0000460;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000460;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000460:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20158011	20158127	.	-	.	source_transcript=hg002_chrY_paternal_433.6;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.6,hg002_chrY_paternal_433.6;transcript_id=NA12877_ch_T0000460;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000460;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000460:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20158128	20159326	.	-	.	source_transcript=hg002_chrY_paternal_433.6;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.6,hg002_chrY_paternal_433.6;transcript_id=NA12877_ch_T0000460;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000460;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000460:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20159327	20166996	.	-	.	source_transcript=hg002_chrY_paternal_433.6;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.6,hg002_chrY_paternal_433.6;transcript_id=NA12877_ch_T0000460;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000460;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000460:2;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20153886	20166996	1000	-	.	source_transcript=hg002_chrY_paternal_433.7;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.7;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.7,hg002_chrY_paternal_433.7;transcript_id=NA12877_ch_T0000461;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_G0000180;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=NA12877_ch_T0000461;Name=LOC105377223
NA12877_chrY	CAT	exon	20153886	20157276	.	-	.	source_transcript=hg002_chrY_paternal_433.7;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.7,hg002_chrY_paternal_433.7;transcript_id=NA12877_ch_T0000461;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000461;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000461:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20157277	20158010	.	-	.	source_transcript=hg002_chrY_paternal_433.7;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.7,hg002_chrY_paternal_433.7;transcript_id=NA12877_ch_T0000461;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000461;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000461:0;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20158011	20158127	.	-	.	source_transcript=hg002_chrY_paternal_433.7;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.7,hg002_chrY_paternal_433.7;transcript_id=NA12877_ch_T0000461;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000461;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000461:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20158128	20166968	.	-	.	source_transcript=hg002_chrY_paternal_433.7;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.7,hg002_chrY_paternal_433.7;transcript_id=NA12877_ch_T0000461;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000461;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=intron:NA12877_ch_T0000461:1;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20166969	20166996	.	-	.	source_transcript=hg002_chrY_paternal_433.7;source_transcript_name=hg002_chrY_paternal_433.1;source_gene=hg002_chrY_paternal_433;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_433;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_433.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_433.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377223;alternative_source_transcripts=hg002_chrY_paternal_433.7,hg002_chrY_paternal_433.7;transcript_id=NA12877_ch_T0000461;gene_id=NA12877_ch_G0000180;Parent=NA12877_ch_T0000461;transcript_name=hg002_chrY_paternal_433.1;gene_name=LOC105377223;ID=exon:NA12877_ch_T0000461:2;Name=LOC105377223;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	20167345	20207157	.	+	.	source_gene_common_name=TXLNGY;source_gene=hg002_chrY_paternal_434;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;gene_id=NA12877_ch_G0000181;gene_biotype=transcribed_pseudogene;gene_name=TXLNGY;gene_sources=liftoff;ID=NA12877_ch_G0000181;Name=TXLNGY
NA12877_chrY	CAT	transcript	20167345	20190410	1000	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=NA12877_ch_T0000462;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_G0000181;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=NA12877_ch_T0000462;Name=TXLNGY
NA12877_chrY	CAT	exon	20167345	20167469	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=NA12877_ch_T0000462;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000462;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000462:0;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20167470	20187196	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=NA12877_ch_T0000462;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000462;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:NA12877_ch_T0000462:0;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20187197	20187494	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=NA12877_ch_T0000462;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000462;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000462:1;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20187495	20189507	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=NA12877_ch_T0000462;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000462;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:NA12877_ch_T0000462:1;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20189508	20189599	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=NA12877_ch_T0000462;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000462;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000462:2;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20189600	20190069	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=NA12877_ch_T0000462;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000462;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:NA12877_ch_T0000462:2;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20190070	20190410	.	+	.	source_transcript=hg002_chrY_paternal_434.1;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.1,hg002_chrY_paternal_434.1;transcript_id=NA12877_ch_T0000462;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000462;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000462:3;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20167345	20207157	1000	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_G0000181;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=NA12877_ch_T0000463;Name=TXLNGY
NA12877_chrY	CAT	exon	20167345	20167469	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000463:0;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20167470	20187196	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:NA12877_ch_T0000463:0;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20187197	20187494	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000463:1;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20187495	20189507	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:NA12877_ch_T0000463:1;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20189508	20189599	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000463:2;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20189600	20191766	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:NA12877_ch_T0000463:2;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20191767	20191946	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000463:3;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20191947	20193385	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:NA12877_ch_T0000463:3;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20193386	20193580	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000463:4;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20193581	20196001	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:NA12877_ch_T0000463:4;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20196002	20196121	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000463:5;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20196122	20197577	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:NA12877_ch_T0000463:5;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20197578	20197652	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000463:6;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20197653	20199725	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:NA12877_ch_T0000463:6;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20199726	20199818	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000463:7;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20199819	20202202	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:NA12877_ch_T0000463:7;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20202203	20202298	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000463:8;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20202299	20203783	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=intron:NA12877_ch_T0000463:8;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20203784	20207157	.	+	.	source_transcript=hg002_chrY_paternal_434.2;source_transcript_name=hg002_chrY_paternal_434.1;source_gene=hg002_chrY_paternal_434;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_434;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_434.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_434.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;alternative_source_transcripts=hg002_chrY_paternal_434.2,hg002_chrY_paternal_434.2;transcript_id=NA12877_ch_T0000463;gene_id=NA12877_ch_G0000181;Parent=NA12877_ch_T0000463;transcript_name=hg002_chrY_paternal_434.1;gene_name=TXLNGY;ID=exon:NA12877_ch_T0000463:9;Name=TXLNGY;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	20303850	20344711	.	-	.	source_gene_common_name=KDM5D;source_gene=hg002_chrY_paternal_435;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;gene_id=NA12877_ch_G0000182;gene_biotype=protein_coding;gene_name=KDM5D;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000182;Name=KDM5D
NA12877_chrY	CAT	transcript	20303850	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000464;Name=KDM5D
NA12877_chrY	CAT	exon	20303850	20306330	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20305980	20306330	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20305980	20305982	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000464;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306331	20306425	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306426	20306625	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306426	20306625	.	-	2	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306626	20306778	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306779	20306848	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306779	20306848	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306849	20307131	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307132	20307731	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307132	20307731	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20307732	20307918	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307919	20308056	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307919	20308056	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308057	20308228	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308229	20308408	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308229	20308408	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308409	20308859	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308860	20308998	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308860	20308998	.	-	1	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308999	20309435	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20309436	20309794	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20309436	20309794	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20309795	20310360	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20310361	20310457	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20310361	20310457	.	-	1	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310458	20315336	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315337	20315484	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315337	20315484	.	-	2	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315485	20315599	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315600	20315724	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315600	20315724	.	-	1	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315725	20315807	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315808	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315808	20315989	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20323325	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20323326	20323418	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20323326	20323418	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20323419	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20339512	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20339513	20339647	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20339513	20339647	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20339648	20341302	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341303	20341473	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341303	20341473	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341474	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:26;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000464:26;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000464;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000464:26;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.1;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.1,hg002_chrY_paternal_435.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000464;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000464;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000464:27;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20303850	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000465;Name=KDM5D
NA12877_chrY	CAT	exon	20303850	20306330	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20305980	20306330	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20305980	20305982	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000465;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306331	20306425	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306426	20306625	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306426	20306625	.	-	2	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306626	20306778	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306779	20306848	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306779	20306848	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306849	20307131	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307132	20307731	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307132	20307731	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20307732	20307918	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307919	20308056	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307919	20308056	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308057	20308306	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308307	20308408	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308307	20308408	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308409	20308859	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308860	20308998	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308860	20308998	.	-	1	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308999	20309435	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20309436	20309563	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20309436	20309563	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20309564	20310360	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20310361	20310457	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20310361	20310457	.	-	1	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310458	20315336	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315337	20315484	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315337	20315484	.	-	2	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315485	20315599	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315600	20315724	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315600	20315724	.	-	1	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315725	20315807	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315808	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315808	20315989	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20339512	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20339513	20339647	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20339513	20339647	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20339648	20341302	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341303	20341473	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341303	20341473	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341474	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000465:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000465;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000465:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.10;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.10,hg002_chrY_paternal_435.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000465;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000465;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000465:26;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20303850	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000466;Name=KDM5D
NA12877_chrY	CAT	exon	20303850	20306330	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20305980	20306330	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20305980	20305982	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000466;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306331	20306425	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306426	20306625	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306426	20306625	.	-	2	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306626	20306778	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306779	20306848	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306779	20306848	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306849	20307131	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307132	20307731	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307132	20307731	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20307732	20307918	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307919	20308056	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307919	20308056	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308057	20308228	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308229	20308408	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308229	20308408	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308409	20308859	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308860	20308998	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308860	20308998	.	-	1	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308999	20309435	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20309436	20309563	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20309436	20309563	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20309564	20310360	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20310361	20310457	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20310361	20310457	.	-	1	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310458	20315336	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315337	20315484	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315337	20315484	.	-	2	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315485	20315599	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315600	20315724	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315600	20315724	.	-	1	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315725	20315807	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315808	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315808	20315989	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20341302	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341303	20341473	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341303	20341473	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341474	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000466:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000466;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000466:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.2;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.2,hg002_chrY_paternal_435.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000466;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000466;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000466:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20303850	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000467;Name=KDM5D
NA12877_chrY	CAT	exon	20303850	20306330	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20305980	20306330	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20305980	20305982	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000467;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306331	20306425	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306426	20306625	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306426	20306625	.	-	2	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306626	20306778	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306779	20306848	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306779	20306848	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306849	20307131	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307132	20307731	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307132	20307731	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20307732	20307918	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307919	20308056	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307919	20308056	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308057	20308306	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308307	20308408	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308307	20308408	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308409	20308859	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308860	20308998	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308860	20308998	.	-	1	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308999	20309435	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20309436	20309563	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20309436	20309563	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20309564	20310360	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20310361	20310457	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20310361	20310457	.	-	1	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310458	20315336	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315337	20315484	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315337	20315484	.	-	2	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315485	20315599	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315600	20315724	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315600	20315724	.	-	1	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315725	20315807	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315808	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315808	20315989	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20341302	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341303	20341473	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341303	20341473	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341474	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000467:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000467;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000467:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.3;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.3,hg002_chrY_paternal_435.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000467;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000467;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000467:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20303850	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000468;Name=KDM5D
NA12877_chrY	CAT	exon	20303850	20306330	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20305980	20306330	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20305980	20305982	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000468;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306331	20306425	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306426	20306625	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306426	20306625	.	-	2	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306626	20306778	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306779	20306848	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306779	20306848	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306849	20307131	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307132	20307731	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307132	20307731	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20307732	20307918	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307919	20308056	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307919	20308056	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308057	20308228	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308229	20308408	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308229	20308408	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308409	20308859	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308860	20308998	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308860	20308998	.	-	1	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308999	20309435	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20309436	20309794	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20309436	20309794	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20309795	20310360	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20310361	20310457	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20310361	20310457	.	-	1	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310458	20315336	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315337	20315484	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315337	20315484	.	-	2	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315485	20315599	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315600	20315724	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315600	20315724	.	-	1	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315725	20315807	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315808	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315808	20315989	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20339512	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20339513	20339647	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20339513	20339647	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20339648	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000468:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000468;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000468:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.4;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.4,hg002_chrY_paternal_435.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000468;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000468;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000468:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20303850	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000469;Name=KDM5D
NA12877_chrY	CAT	exon	20303850	20306330	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20305980	20306330	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20305980	20305982	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000469;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306331	20306425	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306426	20306625	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306426	20306625	.	-	2	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306626	20306778	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306779	20306848	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306779	20306848	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306849	20307131	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307132	20307731	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307132	20307731	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20307732	20307918	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307919	20308056	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307919	20308056	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308057	20308228	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308229	20308408	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308229	20308408	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308409	20308859	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308860	20308998	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308860	20308998	.	-	1	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308999	20309435	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20309436	20309794	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20309436	20309794	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20309795	20310360	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20310361	20310457	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20310361	20310457	.	-	1	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310458	20315336	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315337	20315484	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315337	20315484	.	-	2	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315485	20315599	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315600	20315724	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315600	20315724	.	-	1	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315725	20315807	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315808	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315808	20315989	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20339512	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20339513	20339647	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20339513	20339647	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20339648	20341302	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341303	20341473	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341303	20341473	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341474	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000469:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000469;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000469:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.5;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.5,hg002_chrY_paternal_435.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000469;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000469;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000469:26;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20303850	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000470;Name=KDM5D
NA12877_chrY	CAT	exon	20303850	20306330	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20305980	20306330	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20305980	20305982	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000470;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306331	20306425	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306426	20306625	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306426	20306625	.	-	2	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306626	20306778	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306779	20306848	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306779	20306848	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306849	20307131	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307132	20307731	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307132	20307731	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20307732	20307918	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307919	20308056	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307919	20308056	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308057	20308228	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308229	20308408	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308229	20308408	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308409	20308859	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308860	20308998	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308860	20308998	.	-	1	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308999	20309435	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20309436	20309794	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20309436	20309794	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20309795	20310360	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20310361	20310457	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20310361	20310457	.	-	1	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310458	20315336	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315337	20315484	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315337	20315484	.	-	2	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315485	20315599	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315600	20315724	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315600	20315724	.	-	1	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315725	20315807	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315808	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315808	20315989	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20341302	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341303	20341473	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341303	20341473	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341474	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000470:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000470;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000470:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.6;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.6,hg002_chrY_paternal_435.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000470;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000470;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000470:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20303850	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000471;Name=KDM5D
NA12877_chrY	CAT	exon	20303850	20306330	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20305980	20306330	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20305980	20305982	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000471;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306331	20306425	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306426	20306625	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306426	20306625	.	-	2	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306626	20306778	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306779	20306848	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306779	20306848	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306849	20307131	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307132	20307731	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307132	20307731	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20307732	20307918	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307919	20308056	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307919	20308056	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308057	20308228	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308229	20308408	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308229	20308408	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308409	20308859	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308860	20308998	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308860	20308998	.	-	1	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308999	20309435	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20309436	20309563	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20309436	20309563	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20309564	20310360	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20310361	20310457	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20310361	20310457	.	-	1	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310458	20315336	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315337	20315484	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315337	20315484	.	-	2	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315485	20315599	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315600	20315724	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315600	20315724	.	-	1	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315725	20315807	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315808	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315808	20315989	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20339512	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20339513	20339647	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20339513	20339647	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20339648	20341302	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341303	20341473	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341303	20341473	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341474	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000471:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000471;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000471:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.7;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.7,hg002_chrY_paternal_435.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000471;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000471;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000471:26;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20303850	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000472;Name=KDM5D
NA12877_chrY	CAT	exon	20303850	20306330	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20305980	20306330	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20305980	20305982	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000472;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306331	20306425	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306426	20306625	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306426	20306625	.	-	2	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306626	20306778	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306779	20306848	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306779	20306848	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306849	20307131	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307132	20307731	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307132	20307731	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20307732	20307918	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307919	20308056	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307919	20308056	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308057	20308306	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308307	20308408	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308307	20308408	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308409	20308859	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308860	20308998	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308860	20308998	.	-	1	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308999	20309435	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20309436	20309794	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20309436	20309794	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20309795	20310360	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20310361	20310457	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20310361	20310457	.	-	1	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310458	20315336	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315337	20315484	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315337	20315484	.	-	2	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315485	20315599	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315600	20315724	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315600	20315724	.	-	1	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315725	20315807	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315808	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315808	20315989	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20339512	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20339513	20339647	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20339513	20339647	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20339648	20341302	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341303	20341473	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341303	20341473	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341474	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000472:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000472;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000472:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.8;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.8,hg002_chrY_paternal_435.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000472;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000472;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000472:26;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20303850	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000473;Name=KDM5D
NA12877_chrY	CAT	exon	20303850	20306330	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20305980	20306330	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20305980	20305982	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000473;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306331	20306425	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306426	20306625	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306426	20306625	.	-	2	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306626	20306778	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306779	20306848	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306779	20306848	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306849	20307131	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307132	20307731	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307132	20307731	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20307732	20307918	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307919	20308056	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307919	20308056	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308057	20308306	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308307	20308408	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308307	20308408	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308409	20308859	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308860	20308998	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308860	20308998	.	-	1	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308999	20309435	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20309436	20309794	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20309436	20309794	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20309795	20310360	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20310361	20310457	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20310361	20310457	.	-	1	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310458	20315336	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315337	20315484	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315337	20315484	.	-	2	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315485	20315599	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315600	20315724	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315600	20315724	.	-	1	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315725	20315807	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315808	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315808	20315989	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20341302	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341303	20341473	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341303	20341473	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341474	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000473:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000473;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000473:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.9;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.9,hg002_chrY_paternal_435.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000473;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000473;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000473:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20306463	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000474;Name=KDM5D
NA12877_chrY	CAT	exon	20306463	20306593	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306565	20306593	.	-	2	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20306565	20306567	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000474;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306594	20306778	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20306779	20306848	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20306779	20306848	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20306849	20307131	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307132	20307731	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307132	20307731	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20307732	20307918	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20307919	20308056	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20307919	20308056	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308057	20308228	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308229	20308408	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308229	20308408	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308409	20308859	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20308860	20308998	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20308860	20308998	.	-	1	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20308999	20309435	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20309436	20309794	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20309436	20309794	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20309795	20310360	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20310361	20310457	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20310361	20310457	.	-	1	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310458	20315336	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315337	20315484	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315337	20315484	.	-	2	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315485	20315599	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315600	20315724	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315600	20315724	.	-	1	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315725	20315807	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315808	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315808	20315989	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20339512	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20339513	20339647	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20339513	20339647	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20339648	20341302	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:20;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341303	20341473	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341303	20341473	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341474	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:21;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:22;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:23;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000474:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000474;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000474:24;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.11;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.11,hg002_chrY_paternal_435.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000474;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000474;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000474:25;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20309445	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000475;Name=KDM5D
NA12877_chrY	CAT	exon	20309445	20310245	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20310162	20310245	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20310162	20310164	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000475;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310246	20310360	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20310361	20310457	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20310361	20310457	.	-	1	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310458	20315336	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315337	20315484	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315337	20315484	.	-	2	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315485	20315599	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315600	20315724	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315600	20315724	.	-	1	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315725	20315807	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315808	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315808	20315989	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20339512	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20339513	20339647	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20339513	20339647	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20339648	20341302	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341303	20341473	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341303	20341473	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341474	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000475:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000475;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000475:18;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.12;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.12,hg002_chrY_paternal_435.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000475;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000475;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000475:19;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20310385	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000476;Name=KDM5D
NA12877_chrY	CAT	exon	20310385	20310457	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20310458	20315568	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315569	20315724	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315592	20315724	.	-	1	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20315592	20315594	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000476;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315725	20315807	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20315808	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315808	20315989	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20339512	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20339513	20339647	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20339513	20339647	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20339648	20341302	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341303	20341473	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341303	20341473	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341474	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000476:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000476;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000476:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.13;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.13,hg002_chrY_paternal_435.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000476;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000476;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000476:17;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20315856	20344711	100	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_G0000182;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=NA12877_ch_T0000477;Name=KDM5D
NA12877_chrY	CAT	exon	20315856	20315989	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20315973	20315989	.	-	2	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	20315973	20315975	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=stop_codon:NA12877_ch_T0000477;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20315990	20316083	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:0;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316084	20316096	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316084	20316096	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316097	20316263	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:1;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316264	20316458	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316264	20316458	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316459	20316580	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:2;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20316581	20316700	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20316581	20316700	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20316701	20320856	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:3;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20320857	20321019	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20320857	20321019	.	-	1	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321020	20321114	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:4;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20321115	20321296	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20321115	20321296	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20321297	20331756	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:5;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20331757	20331915	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20331757	20331915	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20331916	20332030	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:6;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332031	20332150	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332031	20332150	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332151	20332568	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:7;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20332569	20332727	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20332569	20332727	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20332728	20335336	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:8;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335337	20335482	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335337	20335482	.	-	2	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335483	20335605	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:9;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20335606	20335735	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20335606	20335735	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20335736	20339512	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:10;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20339513	20339647	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20339513	20339647	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20339648	20341302	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:11;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341303	20341473	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341303	20341473	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341474	20341719	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:12;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20341720	20341842	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20341720	20341842	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20341843	20343146	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:13;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20343147	20343224	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20343147	20343224	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20343225	20344369	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:14;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344370	20344538	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	20344370	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=CDS:NA12877_ch_T0000477:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	20344517	20344519	.	-	0	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=start_codon:NA12877_ch_T0000477;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20344539	20344655	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=intron:NA12877_ch_T0000477:15;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20344656	20344711	.	-	.	source_transcript=hg002_chrY_paternal_435.14;source_transcript_name=hg002_chrY_paternal_435.14;source_gene=hg002_chrY_paternal_435;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_435;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_435.14;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_435.14;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=hg002_chrY_paternal_435.14,hg002_chrY_paternal_435.14;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000477;gene_id=NA12877_ch_G0000182;Parent=NA12877_ch_T0000477;transcript_name=hg002_chrY_paternal_435.14;gene_name=KDM5D;ID=exon:NA12877_ch_T0000477:16;Name=KDM5D;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	20344741	20357434	.	+	.	source_gene_common_name=LOC105377224;source_gene=hg002_chrY_paternal_436;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;gene_id=NA12877_ch_G0000183;gene_biotype=lncRNA;gene_name=LOC105377224;gene_sources=liftoff;ID=NA12877_ch_G0000183;Name=LOC105377224
NA12877_chrY	CAT	transcript	20344741	20357541	1000	+	.	source_transcript=hg002_chrY_paternal_436.1;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;transcript_id=NA12877_ch_T0000478;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_G0000183;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=NA12877_ch_T0000478;Name=LOC105377224
NA12877_chrY	CAT	exon	20344741	20345698	.	+	.	source_transcript=hg002_chrY_paternal_436.1;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;transcript_id=NA12877_ch_T0000478;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000478;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:NA12877_ch_T0000478:0;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20345699	20354610	.	+	.	source_transcript=hg002_chrY_paternal_436.1;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;transcript_id=NA12877_ch_T0000478;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000478;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:NA12877_ch_T0000478:0;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20354611	20354800	.	+	.	source_transcript=hg002_chrY_paternal_436.1;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;transcript_id=NA12877_ch_T0000478;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000478;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:NA12877_ch_T0000478:1;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20354801	20355189	.	+	.	source_transcript=hg002_chrY_paternal_436.1;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;transcript_id=NA12877_ch_T0000478;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000478;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:NA12877_ch_T0000478:1;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20355190	20357541	.	+	.	source_transcript=hg002_chrY_paternal_436.1;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.1,hg002_chrY_paternal_436.1;transcript_id=NA12877_ch_T0000478;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000478;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:NA12877_ch_T0000478:2;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20344770	20359056	1000	+	.	source_transcript=hg002_chrY_paternal_436.2;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.2,hg002_chrY_paternal_436.2;transcript_id=NA12877_ch_T0000479;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_G0000183;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=NA12877_ch_T0000479;Name=LOC105377224
NA12877_chrY	CAT	exon	20344770	20345698	.	+	.	source_transcript=hg002_chrY_paternal_436.2;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.2,hg002_chrY_paternal_436.2;transcript_id=NA12877_ch_T0000479;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000479;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:NA12877_ch_T0000479:0;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20345699	20354711	.	+	.	source_transcript=hg002_chrY_paternal_436.2;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.2,hg002_chrY_paternal_436.2;transcript_id=NA12877_ch_T0000479;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000479;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:NA12877_ch_T0000479:0;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20354712	20354800	.	+	.	source_transcript=hg002_chrY_paternal_436.2;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.2,hg002_chrY_paternal_436.2;transcript_id=NA12877_ch_T0000479;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000479;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:NA12877_ch_T0000479:1;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20354801	20355189	.	+	.	source_transcript=hg002_chrY_paternal_436.2;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.2,hg002_chrY_paternal_436.2;transcript_id=NA12877_ch_T0000479;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000479;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:NA12877_ch_T0000479:1;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20355190	20359056	.	+	.	source_transcript=hg002_chrY_paternal_436.2;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.2,hg002_chrY_paternal_436.2;transcript_id=NA12877_ch_T0000479;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000479;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:NA12877_ch_T0000479:2;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	20344823	20357434	1000	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=NA12877_ch_T0000480;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_G0000183;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=NA12877_ch_T0000480;Name=LOC105377224
NA12877_chrY	CAT	exon	20344823	20345698	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=NA12877_ch_T0000480;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000480;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:NA12877_ch_T0000480:0;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20345699	20354711	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=NA12877_ch_T0000480;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000480;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:NA12877_ch_T0000480:0;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20354712	20354800	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=NA12877_ch_T0000480;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000480;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:NA12877_ch_T0000480:1;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20354801	20355189	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=NA12877_ch_T0000480;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000480;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:NA12877_ch_T0000480:1;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20355190	20355309	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=NA12877_ch_T0000480;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000480;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:NA12877_ch_T0000480:2;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	20355310	20356627	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=NA12877_ch_T0000480;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000480;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=intron:NA12877_ch_T0000480:2;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	20356628	20357434	.	+	.	source_transcript=hg002_chrY_paternal_436.3;source_transcript_name=hg002_chrY_paternal_436.1;source_gene=hg002_chrY_paternal_436;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_436;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_436.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_436.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377224;alternative_source_transcripts=hg002_chrY_paternal_436.3,hg002_chrY_paternal_436.3;transcript_id=NA12877_ch_T0000480;gene_id=NA12877_ch_G0000183;Parent=NA12877_ch_T0000480;transcript_name=hg002_chrY_paternal_436.1;gene_name=LOC105377224;ID=exon:NA12877_ch_T0000480:3;Name=LOC105377224;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	21169538	21223095	.	-	.	source_gene_common_name=TTTY10;source_gene=hg002_chrY_paternal_441;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;gene_id=NA12877_ch_G0000184;gene_biotype=lncRNA;gene_name=TTTY10;gene_sources=liftoff;ID=NA12877_ch_G0000184;Name=TTTY10
NA12877_chrY	CAT	transcript	21169538	21223095	1000	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=NA12877_ch_T0000481;gene_id=NA12877_ch_G0000184;Parent=NA12877_ch_G0000184;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=NA12877_ch_T0000481;Name=TTTY10
NA12877_chrY	CAT	exon	21169538	21169692	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=NA12877_ch_T0000481;gene_id=NA12877_ch_G0000184;Parent=NA12877_ch_T0000481;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=exon:NA12877_ch_T0000481:0;Name=TTTY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21169693	21170297	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=NA12877_ch_T0000481;gene_id=NA12877_ch_G0000184;Parent=NA12877_ch_T0000481;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=intron:NA12877_ch_T0000481:0;Name=TTTY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21170298	21170537	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=NA12877_ch_T0000481;gene_id=NA12877_ch_G0000184;Parent=NA12877_ch_T0000481;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=exon:NA12877_ch_T0000481:1;Name=TTTY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21170538	21172058	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=NA12877_ch_T0000481;gene_id=NA12877_ch_G0000184;Parent=NA12877_ch_T0000481;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=intron:NA12877_ch_T0000481:1;Name=TTTY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21172059	21172118	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=NA12877_ch_T0000481;gene_id=NA12877_ch_G0000184;Parent=NA12877_ch_T0000481;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=exon:NA12877_ch_T0000481:2;Name=TTTY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21172119	21173744	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=NA12877_ch_T0000481;gene_id=NA12877_ch_G0000184;Parent=NA12877_ch_T0000481;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=intron:NA12877_ch_T0000481:2;Name=TTTY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21173745	21173854	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=NA12877_ch_T0000481;gene_id=NA12877_ch_G0000184;Parent=NA12877_ch_T0000481;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=exon:NA12877_ch_T0000481:3;Name=TTTY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21173855	21211218	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=NA12877_ch_T0000481;gene_id=NA12877_ch_G0000184;Parent=NA12877_ch_T0000481;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=intron:NA12877_ch_T0000481:3;Name=TTTY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21211219	21211323	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=NA12877_ch_T0000481;gene_id=NA12877_ch_G0000184;Parent=NA12877_ch_T0000481;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=exon:NA12877_ch_T0000481:4;Name=TTTY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21211324	21222137	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=NA12877_ch_T0000481;gene_id=NA12877_ch_G0000184;Parent=NA12877_ch_T0000481;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=intron:NA12877_ch_T0000481:4;Name=TTTY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21222138	21223095	.	-	.	source_transcript=hg002_chrY_paternal_441.1;source_transcript_name=hg002_chrY_paternal_441.1;source_gene=hg002_chrY_paternal_441;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_441;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_441.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=hg002_chrY_paternal_441.1,hg002_chrY_paternal_441.1;transcript_id=NA12877_ch_T0000481;gene_id=NA12877_ch_G0000184;Parent=NA12877_ch_T0000481;transcript_name=hg002_chrY_paternal_441.1;gene_name=TTTY10;ID=exon:NA12877_ch_T0000481:5;Name=TTTY10;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	21279643	21297023	.	+	.	source_gene_common_name=EIF1AY;source_gene=hg002_chrY_paternal_443;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;gene_id=NA12877_ch_G0000185;gene_biotype=protein_coding;gene_name=EIF1AY;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000185;Name=EIF1AY
NA12877_chrY	CAT	transcript	21279643	21297023	100	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_G0000185;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=NA12877_ch_T0000482;Name=EIF1AY
NA12877_chrY	CAT	exon	21279643	21279754	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:NA12877_ch_T0000482:0;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21279739	21279754	.	+	0	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:NA12877_ch_T0000482:0;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	21279739	21279741	.	+	0	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=start_codon:NA12877_ch_T0000482;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21279755	21283475	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:NA12877_ch_T0000482:0;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21283476	21283559	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:NA12877_ch_T0000482:1;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21283476	21283559	.	+	2	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:NA12877_ch_T0000482:1;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21283560	21286457	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:NA12877_ch_T0000482:1;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21286458	21286561	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:NA12877_ch_T0000482:2;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21286458	21286561	.	+	2	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:NA12877_ch_T0000482:2;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21286562	21291892	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:NA12877_ch_T0000482:2;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21291893	21291974	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:NA12877_ch_T0000482:3;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21291893	21291974	.	+	0	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:NA12877_ch_T0000482:3;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21291975	21293352	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:NA12877_ch_T0000482:3;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21293353	21293444	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:NA12877_ch_T0000482:4;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21293353	21293444	.	+	2	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:NA12877_ch_T0000482:4;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21293445	21296209	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:NA12877_ch_T0000482:4;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21296210	21297023	.	+	.	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:NA12877_ch_T0000482:5;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21296210	21296215	.	+	0	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:NA12877_ch_T0000482:5;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	21296213	21296215	.	+	0	source_transcript=hg002_chrY_paternal_443.1;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.1,hg002_chrY_paternal_443.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000482;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000482;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=stop_codon:NA12877_ch_T0000482;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	21279643	21297023	100	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_G0000185;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=NA12877_ch_T0000483;Name=EIF1AY
NA12877_chrY	CAT	exon	21279643	21279754	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:NA12877_ch_T0000483:0;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21279739	21279754	.	+	0	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:NA12877_ch_T0000483:0;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	21279739	21279741	.	+	0	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=start_codon:NA12877_ch_T0000483;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21279755	21283475	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:NA12877_ch_T0000483:0;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21283476	21283559	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:NA12877_ch_T0000483:1;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21283476	21283559	.	+	2	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:NA12877_ch_T0000483:1;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21283560	21286457	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:NA12877_ch_T0000483:1;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21286458	21286561	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:NA12877_ch_T0000483:2;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21286458	21286561	.	+	2	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:NA12877_ch_T0000483:2;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21286562	21288342	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:NA12877_ch_T0000483:2;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21288343	21288393	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:NA12877_ch_T0000483:3;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21288343	21288393	.	+	0	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:NA12877_ch_T0000483:3;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21288394	21291892	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:NA12877_ch_T0000483:3;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21291893	21291974	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:NA12877_ch_T0000483:4;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21291893	21291974	.	+	0	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:NA12877_ch_T0000483:4;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21291975	21293352	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:NA12877_ch_T0000483:4;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21293353	21293444	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:NA12877_ch_T0000483:5;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21293353	21293444	.	+	2	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:NA12877_ch_T0000483:5;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21293445	21296209	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=intron:NA12877_ch_T0000483:5;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21296210	21297023	.	+	.	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=exon:NA12877_ch_T0000483:6;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21296210	21296215	.	+	0	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=CDS:NA12877_ch_T0000483:6;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	21296213	21296215	.	+	0	source_transcript=hg002_chrY_paternal_443.2;source_transcript_name=hg002_chrY_paternal_443.2;source_gene=hg002_chrY_paternal_443;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_443;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_443.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_443.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=hg002_chrY_paternal_443.2,hg002_chrY_paternal_443.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000483;gene_id=NA12877_ch_G0000185;Parent=NA12877_ch_T0000483;transcript_name=hg002_chrY_paternal_443.2;gene_name=EIF1AY;ID=stop_codon:NA12877_ch_T0000483;Name=EIF1AY;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	21460006	21484931	.	+	.	source_gene_common_name=RPS4Y2;source_gene=hg002_chrY_paternal_446;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;gene_id=NA12877_ch_G0000186;gene_biotype=protein_coding;gene_name=RPS4Y2;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000186;Name=RPS4Y2
NA12877_chrY	CAT	transcript	21460006	21484931	100	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_G0000186;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=NA12877_ch_T0000484;Name=RPS4Y2
NA12877_chrY	CAT	exon	21460006	21460064	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:NA12877_ch_T0000484:0;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21460062	21460064	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:NA12877_ch_T0000484:0;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	21460062	21460064	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=start_codon:NA12877_ch_T0000484;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21460065	21460675	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=intron:NA12877_ch_T0000484:0;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21460676	21460753	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:NA12877_ch_T0000484:1;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21460676	21460753	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:NA12877_ch_T0000484:1;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21460754	21463766	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=intron:NA12877_ch_T0000484:1;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21463767	21463947	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:NA12877_ch_T0000484:2;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21463767	21463947	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:NA12877_ch_T0000484:2;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21463948	21465182	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=intron:NA12877_ch_T0000484:2;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21465183	21465280	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:NA12877_ch_T0000484:3;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21465183	21465280	.	+	2	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:NA12877_ch_T0000484:3;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21465281	21472703	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=intron:NA12877_ch_T0000484:3;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21472704	21472875	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:NA12877_ch_T0000484:4;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21472704	21472875	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:NA12877_ch_T0000484:4;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21472876	21483407	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=intron:NA12877_ch_T0000484:4;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21483408	21483565	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:NA12877_ch_T0000484:5;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21483408	21483565	.	+	2	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:NA12877_ch_T0000484:5;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21483566	21484829	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=intron:NA12877_ch_T0000484:5;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21484830	21484931	.	+	.	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=exon:NA12877_ch_T0000484:6;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	21484830	21484931	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=CDS:NA12877_ch_T0000484:6;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	21484929	21484931	.	+	0	source_transcript=hg002_chrY_paternal_446.1;source_transcript_name=hg002_chrY_paternal_446.1;source_gene=hg002_chrY_paternal_446;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_446;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_446.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_446.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=hg002_chrY_paternal_446.1,hg002_chrY_paternal_446.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000484;gene_id=NA12877_ch_G0000186;Parent=NA12877_ch_T0000484;transcript_name=hg002_chrY_paternal_446.1;gene_name=RPS4Y2;ID=stop_codon:NA12877_ch_T0000484;Name=RPS4Y2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	21842548	21876897	.	+	.	source_gene_common_name=LOC105377225;source_gene=hg002_chrY_paternal_451;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;gene_id=NA12877_ch_G0000187;gene_biotype=lncRNA;gene_name=LOC105377225;gene_sources=liftoff;ID=NA12877_ch_G0000187;Name=LOC105377225
NA12877_chrY	CAT	transcript	21842548	21874142	1000	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=NA12877_ch_T0000485;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_G0000187;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=NA12877_ch_T0000485;Name=LOC105377225
NA12877_chrY	CAT	exon	21842548	21842783	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=NA12877_ch_T0000485;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000485;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000485:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21842784	21852090	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=NA12877_ch_T0000485;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000485;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000485:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21852091	21852141	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=NA12877_ch_T0000485;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000485;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000485:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21852142	21852333	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=NA12877_ch_T0000485;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000485;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000485:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21852334	21852428	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=NA12877_ch_T0000485;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000485;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000485:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21852429	21855507	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=NA12877_ch_T0000485;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000485;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000485:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21855508	21855561	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=NA12877_ch_T0000485;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000485;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000485:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21855562	21856757	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=NA12877_ch_T0000485;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000485;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000485:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21856758	21856892	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=NA12877_ch_T0000485;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000485;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000485:4;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21856893	21873878	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=NA12877_ch_T0000485;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000485;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000485:4;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21873879	21874142	.	+	.	source_transcript=hg002_chrY_paternal_451.1;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.1,hg002_chrY_paternal_451.1;transcript_id=NA12877_ch_T0000485;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000485;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000485:5;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	21842548	21874142	1000	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=NA12877_ch_T0000486;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_G0000187;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=NA12877_ch_T0000486;Name=LOC105377225
NA12877_chrY	CAT	exon	21842548	21842783	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=NA12877_ch_T0000486;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000486;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000486:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21842784	21852333	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=NA12877_ch_T0000486;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000486;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000486:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21852334	21852428	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=NA12877_ch_T0000486;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000486;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000486:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21852429	21855507	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=NA12877_ch_T0000486;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000486;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000486:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21855508	21855561	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=NA12877_ch_T0000486;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000486;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000486:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21855562	21856757	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=NA12877_ch_T0000486;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000486;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000486:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21856758	21856892	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=NA12877_ch_T0000486;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000486;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000486:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21856893	21873878	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=NA12877_ch_T0000486;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000486;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000486:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21873879	21874142	.	+	.	source_transcript=hg002_chrY_paternal_451.2;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.2,hg002_chrY_paternal_451.2;transcript_id=NA12877_ch_T0000486;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000486;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000486:4;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	21842548	21874142	1000	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=NA12877_ch_T0000487;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_G0000187;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=NA12877_ch_T0000487;Name=LOC105377225
NA12877_chrY	CAT	exon	21842548	21842783	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=NA12877_ch_T0000487;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000487;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000487:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21842784	21852456	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=NA12877_ch_T0000487;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000487;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000487:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21852457	21852510	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=NA12877_ch_T0000487;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000487;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000487:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21852511	21855507	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=NA12877_ch_T0000487;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000487;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000487:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21855508	21855561	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=NA12877_ch_T0000487;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000487;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000487:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21855562	21856757	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=NA12877_ch_T0000487;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000487;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000487:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21856758	21856892	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=NA12877_ch_T0000487;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000487;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000487:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21856893	21873878	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=NA12877_ch_T0000487;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000487;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000487:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21873879	21874142	.	+	.	source_transcript=hg002_chrY_paternal_451.3;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.3,hg002_chrY_paternal_451.3;transcript_id=NA12877_ch_T0000487;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000487;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000487:4;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	21842548	21876897	1000	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_G0000187;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=NA12877_ch_T0000488;Name=LOC105377225
NA12877_chrY	CAT	exon	21842548	21842783	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000488;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000488:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21842784	21848694	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000488;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000488:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21848695	21848786	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000488;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000488:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21848787	21852090	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000488;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000488:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21852091	21852141	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000488;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000488:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21852142	21852333	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000488;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000488:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21852334	21852428	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000488;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000488:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21852429	21855507	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000488;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000488:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21855508	21855561	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000488;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000488:4;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21855562	21856757	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000488;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000488:4;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21856758	21856892	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000488;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000488:5;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21856893	21873878	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000488;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000488:5;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21873879	21876897	.	+	.	source_transcript=hg002_chrY_paternal_451.4;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.4,hg002_chrY_paternal_451.4;transcript_id=NA12877_ch_T0000488;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000488;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000488:6;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	21847954	21874142	1000	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=NA12877_ch_T0000489;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_G0000187;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=NA12877_ch_T0000489;Name=LOC105377225
NA12877_chrY	CAT	exon	21847954	21852141	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=NA12877_ch_T0000489;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000489;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000489:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21852142	21852333	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=NA12877_ch_T0000489;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000489;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000489:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21852334	21852510	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=NA12877_ch_T0000489;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000489;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000489:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21852511	21855507	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=NA12877_ch_T0000489;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000489;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000489:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21855508	21855561	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=NA12877_ch_T0000489;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000489;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000489:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21855562	21856757	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=NA12877_ch_T0000489;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000489;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000489:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21856758	21856892	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=NA12877_ch_T0000489;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000489;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000489:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21856893	21873878	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=NA12877_ch_T0000489;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000489;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000489:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21873879	21874142	.	+	.	source_transcript=hg002_chrY_paternal_451.5;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.5,hg002_chrY_paternal_451.5;transcript_id=NA12877_ch_T0000489;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000489;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000489:4;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	21847954	21874142	1000	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=NA12877_ch_T0000490;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_G0000187;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=NA12877_ch_T0000490;Name=LOC105377225
NA12877_chrY	CAT	exon	21847954	21852141	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=NA12877_ch_T0000490;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000490;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000490:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21852142	21852456	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=NA12877_ch_T0000490;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000490;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000490:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21852457	21852510	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=NA12877_ch_T0000490;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000490;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000490:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21852511	21855507	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=NA12877_ch_T0000490;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000490;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000490:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21855508	21855561	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=NA12877_ch_T0000490;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000490;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000490:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21855562	21856757	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=NA12877_ch_T0000490;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000490;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000490:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21856758	21856892	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=NA12877_ch_T0000490;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000490;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000490:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21856893	21873878	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=NA12877_ch_T0000490;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000490;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000490:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21873879	21874142	.	+	.	source_transcript=hg002_chrY_paternal_451.6;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.6,hg002_chrY_paternal_451.6;transcript_id=NA12877_ch_T0000490;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000490;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000490:4;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	21847954	21874142	1000	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=NA12877_ch_T0000491;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_G0000187;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=NA12877_ch_T0000491;Name=LOC105377225
NA12877_chrY	CAT	exon	21847954	21852141	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=NA12877_ch_T0000491;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000491;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000491:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21852142	21852333	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=NA12877_ch_T0000491;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000491;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000491:0;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21852334	21852510	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=NA12877_ch_T0000491;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000491;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000491:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21852511	21855507	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=NA12877_ch_T0000491;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000491;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000491:1;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21855508	21855561	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=NA12877_ch_T0000491;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000491;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000491:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21855562	21856598	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=NA12877_ch_T0000491;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000491;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000491:2;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21856599	21856690	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=NA12877_ch_T0000491;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000491;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000491:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21856691	21873878	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=NA12877_ch_T0000491;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000491;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=intron:NA12877_ch_T0000491:3;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21873879	21874142	.	+	.	source_transcript=hg002_chrY_paternal_451.7;source_transcript_name=hg002_chrY_paternal_451.1;source_gene=hg002_chrY_paternal_451;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_451;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_451.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_451.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377225;alternative_source_transcripts=hg002_chrY_paternal_451.7,hg002_chrY_paternal_451.7;transcript_id=NA12877_ch_T0000491;gene_id=NA12877_ch_G0000187;Parent=NA12877_ch_T0000491;transcript_name=hg002_chrY_paternal_451.1;gene_name=LOC105377225;ID=exon:NA12877_ch_T0000491:4;Name=LOC105377225;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	21932060	21957297	.	+	.	source_gene_common_name=LOC107987346;source_gene=hg002_chrY_paternal_453;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;gene_id=NA12877_ch_G0000188;gene_biotype=lncRNA;gene_name=LOC107987346;gene_sources=liftoff;ID=NA12877_ch_G0000188;Name=LOC107987346
NA12877_chrY	CAT	transcript	21932060	21957297	1000	+	.	source_transcript=hg002_chrY_paternal_453.1;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;transcript_id=NA12877_ch_T0000492;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_G0000188;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=NA12877_ch_T0000492;Name=LOC107987346
NA12877_chrY	CAT	exon	21932060	21932097	.	+	.	source_transcript=hg002_chrY_paternal_453.1;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;transcript_id=NA12877_ch_T0000492;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_T0000492;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:NA12877_ch_T0000492:0;Name=LOC107987346;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21932098	21932274	.	+	.	source_transcript=hg002_chrY_paternal_453.1;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;transcript_id=NA12877_ch_T0000492;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_T0000492;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=intron:NA12877_ch_T0000492:0;Name=LOC107987346;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21932275	21932382	.	+	.	source_transcript=hg002_chrY_paternal_453.1;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;transcript_id=NA12877_ch_T0000492;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_T0000492;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:NA12877_ch_T0000492:1;Name=LOC107987346;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21932383	21954472	.	+	.	source_transcript=hg002_chrY_paternal_453.1;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;transcript_id=NA12877_ch_T0000492;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_T0000492;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=intron:NA12877_ch_T0000492:1;Name=LOC107987346;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21954473	21957297	.	+	.	source_transcript=hg002_chrY_paternal_453.1;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.1,hg002_chrY_paternal_453.1;transcript_id=NA12877_ch_T0000492;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_T0000492;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:NA12877_ch_T0000492:2;Name=LOC107987346;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	21932060	21957297	1000	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=NA12877_ch_T0000493;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_G0000188;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=NA12877_ch_T0000493;Name=LOC107987346
NA12877_chrY	CAT	exon	21932060	21932097	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=NA12877_ch_T0000493;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_T0000493;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:NA12877_ch_T0000493:0;Name=LOC107987346;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21932098	21932274	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=NA12877_ch_T0000493;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_T0000493;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=intron:NA12877_ch_T0000493:0;Name=LOC107987346;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21932275	21932382	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=NA12877_ch_T0000493;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_T0000493;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:NA12877_ch_T0000493:1;Name=LOC107987346;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21932383	21954472	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=NA12877_ch_T0000493;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_T0000493;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=intron:NA12877_ch_T0000493:1;Name=LOC107987346;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21954473	21954631	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=NA12877_ch_T0000493;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_T0000493;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:NA12877_ch_T0000493:2;Name=LOC107987346;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21954632	21957045	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=NA12877_ch_T0000493;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_T0000493;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=intron:NA12877_ch_T0000493:2;Name=LOC107987346;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	21957046	21957297	.	+	.	source_transcript=hg002_chrY_paternal_453.2;source_transcript_name=hg002_chrY_paternal_453.1;source_gene=hg002_chrY_paternal_453;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_453;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_453.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_453.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987346;alternative_source_transcripts=hg002_chrY_paternal_453.2,hg002_chrY_paternal_453.2;transcript_id=NA12877_ch_T0000493;gene_id=NA12877_ch_G0000188;Parent=NA12877_ch_T0000493;transcript_name=hg002_chrY_paternal_453.1;gene_name=LOC107987346;ID=exon:NA12877_ch_T0000493:3;Name=LOC107987346;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	21951988	22006930	.	-	.	source_gene_common_name=LOC107987347;source_gene=hg002_chrY_paternal_454;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;gene_id=NA12877_ch_G0000189;gene_biotype=lncRNA;gene_name=LOC107987347;gene_sources=liftoff;ID=NA12877_ch_G0000189;Name=LOC107987347
NA12877_chrY	CAT	transcript	21951988	22006930	1000	-	.	source_transcript=hg002_chrY_paternal_454.1;source_transcript_name=hg002_chrY_paternal_454.1;source_gene=hg002_chrY_paternal_454;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_454;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_454.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_454.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987347;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;transcript_id=NA12877_ch_T0000494;gene_id=NA12877_ch_G0000189;Parent=NA12877_ch_G0000189;transcript_name=hg002_chrY_paternal_454.1;gene_name=LOC107987347;ID=NA12877_ch_T0000494;Name=LOC107987347
NA12877_chrY	CAT	exon	21951988	21953073	.	-	.	source_transcript=hg002_chrY_paternal_454.1;source_transcript_name=hg002_chrY_paternal_454.1;source_gene=hg002_chrY_paternal_454;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_454;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_454.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987347;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;transcript_id=NA12877_ch_T0000494;gene_id=NA12877_ch_G0000189;Parent=NA12877_ch_T0000494;transcript_name=hg002_chrY_paternal_454.1;gene_name=LOC107987347;ID=exon:NA12877_ch_T0000494:0;Name=LOC107987347;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	21953074	22000074	.	-	.	source_transcript=hg002_chrY_paternal_454.1;source_transcript_name=hg002_chrY_paternal_454.1;source_gene=hg002_chrY_paternal_454;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_454;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_454.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987347;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;transcript_id=NA12877_ch_T0000494;gene_id=NA12877_ch_G0000189;Parent=NA12877_ch_T0000494;transcript_name=hg002_chrY_paternal_454.1;gene_name=LOC107987347;ID=intron:NA12877_ch_T0000494:0;Name=LOC107987347;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22000075	22000140	.	-	.	source_transcript=hg002_chrY_paternal_454.1;source_transcript_name=hg002_chrY_paternal_454.1;source_gene=hg002_chrY_paternal_454;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_454;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_454.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987347;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;transcript_id=NA12877_ch_T0000494;gene_id=NA12877_ch_G0000189;Parent=NA12877_ch_T0000494;transcript_name=hg002_chrY_paternal_454.1;gene_name=LOC107987347;ID=exon:NA12877_ch_T0000494:1;Name=LOC107987347;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22000141	22006480	.	-	.	source_transcript=hg002_chrY_paternal_454.1;source_transcript_name=hg002_chrY_paternal_454.1;source_gene=hg002_chrY_paternal_454;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_454;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_454.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987347;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;transcript_id=NA12877_ch_T0000494;gene_id=NA12877_ch_G0000189;Parent=NA12877_ch_T0000494;transcript_name=hg002_chrY_paternal_454.1;gene_name=LOC107987347;ID=intron:NA12877_ch_T0000494:1;Name=LOC107987347;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22006481	22006930	.	-	.	source_transcript=hg002_chrY_paternal_454.1;source_transcript_name=hg002_chrY_paternal_454.1;source_gene=hg002_chrY_paternal_454;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_454;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_454.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987347;alternative_source_transcripts=hg002_chrY_paternal_454.1,hg002_chrY_paternal_454.1;transcript_id=NA12877_ch_T0000494;gene_id=NA12877_ch_G0000189;Parent=NA12877_ch_T0000494;transcript_name=hg002_chrY_paternal_454.1;gene_name=LOC107987347;ID=exon:NA12877_ch_T0000494:2;Name=LOC107987347;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22085827	22155768	.	-	.	source_gene_common_name=PRORY;source_gene=hg002_chrY_paternal_456;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;gene_id=NA12877_ch_G0000190;gene_biotype=lncRNA;gene_name=PRORY;gene_sources=liftoff;ID=NA12877_ch_G0000190;Name=PRORY
NA12877_chrY	CAT	transcript	22085827	22155768	1000	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=NA12877_ch_T0000495;gene_id=NA12877_ch_G0000190;Parent=NA12877_ch_G0000190;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=NA12877_ch_T0000495;Name=PRORY
NA12877_chrY	CAT	exon	22085827	22087202	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=NA12877_ch_T0000495;gene_id=NA12877_ch_G0000190;Parent=NA12877_ch_T0000495;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=exon:NA12877_ch_T0000495:0;Name=PRORY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22087203	22087353	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=NA12877_ch_T0000495;gene_id=NA12877_ch_G0000190;Parent=NA12877_ch_T0000495;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=intron:NA12877_ch_T0000495:0;Name=PRORY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22087354	22087718	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=NA12877_ch_T0000495;gene_id=NA12877_ch_G0000190;Parent=NA12877_ch_T0000495;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=exon:NA12877_ch_T0000495:1;Name=PRORY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22087719	22087834	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=NA12877_ch_T0000495;gene_id=NA12877_ch_G0000190;Parent=NA12877_ch_T0000495;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=intron:NA12877_ch_T0000495:1;Name=PRORY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22087835	22087891	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=NA12877_ch_T0000495;gene_id=NA12877_ch_G0000190;Parent=NA12877_ch_T0000495;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=exon:NA12877_ch_T0000495:2;Name=PRORY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22087892	22090153	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=NA12877_ch_T0000495;gene_id=NA12877_ch_G0000190;Parent=NA12877_ch_T0000495;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=intron:NA12877_ch_T0000495:2;Name=PRORY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22090154	22090278	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=NA12877_ch_T0000495;gene_id=NA12877_ch_G0000190;Parent=NA12877_ch_T0000495;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=exon:NA12877_ch_T0000495:3;Name=PRORY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22090279	22155565	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=NA12877_ch_T0000495;gene_id=NA12877_ch_G0000190;Parent=NA12877_ch_T0000495;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=intron:NA12877_ch_T0000495:3;Name=PRORY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22155566	22155768	.	-	.	source_transcript=hg002_chrY_paternal_456.1;source_transcript_name=hg002_chrY_paternal_456.1;source_gene=hg002_chrY_paternal_456;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_456;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_456.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_456.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=hg002_chrY_paternal_456.1,hg002_chrY_paternal_456.1;transcript_id=NA12877_ch_T0000495;gene_id=NA12877_ch_G0000190;Parent=NA12877_ch_T0000495;transcript_name=hg002_chrY_paternal_456.1;gene_name=PRORY;ID=exon:NA12877_ch_T0000495:4;Name=PRORY;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22099070	22105484	.	-	.	source_gene_common_name=RBMY2EP;source_gene=hg002_chrY_paternal_457;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;gene_id=NA12877_ch_G0000191;gene_biotype=transcribed_pseudogene;gene_name=RBMY2EP;gene_sources=liftoff;ID=NA12877_ch_G0000191;Name=RBMY2EP
NA12877_chrY	CAT	transcript	22099070	22105484	1000	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=NA12877_ch_T0000496;gene_id=NA12877_ch_G0000191;Parent=NA12877_ch_G0000191;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=NA12877_ch_T0000496;Name=RBMY2EP
NA12877_chrY	CAT	exon	22099070	22099213	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=NA12877_ch_T0000496;gene_id=NA12877_ch_G0000191;Parent=NA12877_ch_T0000496;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=exon:NA12877_ch_T0000496:0;Name=RBMY2EP;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22099214	22099621	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=NA12877_ch_T0000496;gene_id=NA12877_ch_G0000191;Parent=NA12877_ch_T0000496;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=intron:NA12877_ch_T0000496:0;Name=RBMY2EP;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22099622	22099710	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=NA12877_ch_T0000496;gene_id=NA12877_ch_G0000191;Parent=NA12877_ch_T0000496;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=exon:NA12877_ch_T0000496:1;Name=RBMY2EP;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22099711	22099792	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=NA12877_ch_T0000496;gene_id=NA12877_ch_G0000191;Parent=NA12877_ch_T0000496;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=intron:NA12877_ch_T0000496:1;Name=RBMY2EP;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22099793	22099903	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=NA12877_ch_T0000496;gene_id=NA12877_ch_G0000191;Parent=NA12877_ch_T0000496;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=exon:NA12877_ch_T0000496:2;Name=RBMY2EP;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22099904	22104844	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=NA12877_ch_T0000496;gene_id=NA12877_ch_G0000191;Parent=NA12877_ch_T0000496;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=intron:NA12877_ch_T0000496:2;Name=RBMY2EP;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22104845	22104948	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=NA12877_ch_T0000496;gene_id=NA12877_ch_G0000191;Parent=NA12877_ch_T0000496;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=exon:NA12877_ch_T0000496:3;Name=RBMY2EP;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22104949	22105398	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=NA12877_ch_T0000496;gene_id=NA12877_ch_G0000191;Parent=NA12877_ch_T0000496;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=intron:NA12877_ch_T0000496:3;Name=RBMY2EP;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22105399	22105484	.	-	.	source_transcript=hg002_chrY_paternal_457.1;source_transcript_name=hg002_chrY_paternal_457.1;source_gene=hg002_chrY_paternal_457;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_457;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_457.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_457.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;alternative_source_transcripts=hg002_chrY_paternal_457.1,hg002_chrY_paternal_457.1;transcript_id=NA12877_ch_T0000496;gene_id=NA12877_ch_G0000191;Parent=NA12877_ch_T0000496;transcript_name=hg002_chrY_paternal_457.1;gene_name=RBMY2EP;ID=exon:NA12877_ch_T0000496:4;Name=RBMY2EP;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22215259	22253251	.	+	.	source_gene_common_name=RBMY1A1;source_gene=hg002_chrY_paternal_462;gene_id=NA12877_ch_G0000192;gene_biotype=protein_coding;gene_name=RBMY1A1;gene_sources=liftoff,augTM,transMap_pairwise;ID=NA12877_ch_G0000192;Name=RBMY1A1
NA12877_chrY	CAT	transcript	22215259	22252263	1000	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_G0000192;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=NA12877_ch_T0000497;Name=RBMY1A1
NA12877_chrY	CAT	exon	22215259	22215406	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000497:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22215407	22217267	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000497:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22217268	22217380	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000497:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22217272	22217380	.	+	0	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000497:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22217272	22217274	.	+	0	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=start_codon:NA12877_ch_T0000497;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22217381	22241398	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000497:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22241399	22241502	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000497:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22241399	22241502	.	+	2	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000497:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22241503	22244521	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000497:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22244522	22244699	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000497:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22244522	22244699	.	+	0	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000497:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22244700	22246614	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000497:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22246615	22246767	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000497:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22246615	22246767	.	+	2	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000497:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22246768	22248777	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000497:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22248778	22248892	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000497:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22248778	22248892	.	+	2	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000497:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22248893	22249847	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000497:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22249848	22249958	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000497:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22249848	22249958	.	+	1	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000497:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22249959	22250399	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000497:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22250400	22250510	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000497:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22250400	22250510	.	+	1	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000497:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22250511	22250944	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000497:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22250945	22251055	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000497:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22250945	22251055	.	+	1	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000497:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22251056	22251976	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000497:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22251977	22252087	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000497:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22251977	22252087	.	+	1	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000497:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22252088	22252174	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000497:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22252175	22252263	.	+	.	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000497:10;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22252175	22252262	.	+	1	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000497:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22252260	22252262	.	+	0	source_transcript=hg002_chrY_paternal_462.1;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000497;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000497;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=stop_codon:NA12877_ch_T0000497;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22215259	22253251	1000	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_G0000192;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=NA12877_ch_T0000498;Name=RBMY1A1
NA12877_chrY	CAT	exon	22215259	22215406	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000498:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22215407	22217267	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000498:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22217268	22217380	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000498:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22217381	22241398	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000498:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22241399	22241502	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000498:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22241503	22246614	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000498:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22246615	22246767	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000498:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22246644	22246767	.	+	0	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000498:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22246644	22246646	.	+	0	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=start_codon:NA12877_ch_T0000498;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22246768	22248777	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000498:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22248778	22248892	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000498:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22248778	22248892	.	+	2	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000498:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22248893	22249847	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000498:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22249848	22249958	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000498:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22249848	22249958	.	+	1	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000498:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22249959	22250399	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000498:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22250400	22250510	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000498:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22250400	22250510	.	+	1	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000498:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22250511	22250944	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000498:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22250945	22251055	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000498:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22250945	22251055	.	+	1	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000498:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22251056	22251976	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000498:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22251977	22252087	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000498:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22251977	22252087	.	+	1	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000498:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22252088	22252174	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000498:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22252175	22252263	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000498:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22252175	22252263	.	+	1	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000498:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22252264	22252674	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000498:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22252675	22253251	.	+	.	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000498:10;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22252675	22252973	.	+	2	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000498:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22252971	22252973	.	+	0	source_transcript=hg002_chrY_paternal_462.3;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.3;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000498;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000498;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=stop_codon:NA12877_ch_T0000498;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22215259	22253251	1000	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_G0000192;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=NA12877_ch_T0000499;Name=RBMY1A1
NA12877_chrY	CAT	exon	22215259	22215406	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000499:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22215407	22217267	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000499:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22217268	22217380	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000499:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22217272	22217380	.	+	0	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000499:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22217272	22217274	.	+	0	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=start_codon:NA12877_ch_T0000499;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22217381	22241398	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000499:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22241399	22241502	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000499:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22241399	22241502	.	+	2	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000499:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22241503	22244521	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000499:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22244522	22244699	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000499:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22244522	22244699	.	+	0	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000499:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22244700	22246614	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000499:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22246615	22246767	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000499:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22246615	22246767	.	+	2	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000499:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22246768	22248777	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000499:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22248778	22248892	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000499:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22248778	22248892	.	+	2	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000499:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22248893	22249847	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000499:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22249848	22249958	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000499:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22249848	22249958	.	+	1	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000499:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22249959	22250399	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000499:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22250400	22250510	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000499:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22250400	22250510	.	+	1	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000499:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22250511	22250944	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000499:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22250945	22251055	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000499:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22250945	22251055	.	+	1	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000499:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22251056	22252174	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000499:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22252175	22252263	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000499:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22252175	22252263	.	+	1	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000499:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22252264	22252674	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000499:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22252675	22253251	.	+	.	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000499:10;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22252675	22252973	.	+	2	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000499:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22252971	22252973	.	+	0	source_transcript=hg002_chrY_paternal_462.2;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.2;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000499;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000499;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=stop_codon:NA12877_ch_T0000499;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22215259	22253251	1000	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_G0000192;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=NA12877_ch_T0000500;Name=RBMY1A1
NA12877_chrY	CAT	exon	22215259	22215406	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000500:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22215407	22217267	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000500:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22217268	22217380	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000500:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22217272	22217380	.	+	0	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000500:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22217272	22217274	.	+	0	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=start_codon:NA12877_ch_T0000500;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22217381	22241398	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000500:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22241399	22241502	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000500:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22241399	22241502	.	+	2	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000500:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22241503	22244521	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000500:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22244522	22244699	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000500:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22244522	22244699	.	+	0	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000500:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22244700	22246614	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000500:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22246615	22246767	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000500:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22246615	22246767	.	+	2	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000500:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22246768	22248777	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000500:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22248778	22248892	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000500:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22248778	22248892	.	+	2	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000500:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22248893	22249847	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000500:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22249848	22249958	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000500:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22249848	22249958	.	+	1	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000500:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22249959	22250399	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000500:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22250400	22250510	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000500:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22250400	22250510	.	+	1	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000500:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22250511	22250944	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000500:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22250945	22251055	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000500:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22250945	22251055	.	+	1	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000500:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22251056	22251976	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000500:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22251977	22252087	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000500:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22251977	22252087	.	+	1	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000500:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22252088	22252174	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000500:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22252175	22252263	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000500:10;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22252175	22252263	.	+	1	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000500:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22252264	22252674	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000500:10;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22252675	22253251	.	+	.	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000500:11;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22252675	22252973	.	+	2	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000500:10;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22252971	22252973	.	+	0	source_transcript=hg002_chrY_paternal_462.4;source_transcript_name=hg002_chrY_paternal_462.1;source_gene=hg002_chrY_paternal_462;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_462;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_462.4;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_462.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;AdditionalSources=augTM,liftoff;transcript_id=NA12877_ch_T0000500;gene_id=NA12877_ch_G0000192;Parent=NA12877_ch_T0000500;transcript_name=hg002_chrY_paternal_462.1;gene_name=RBMY1A1;ID=stop_codon:NA12877_ch_T0000500;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22256123	22288436	.	+	.	source_gene_common_name=RBMY1D;source_gene=hg002_chrY_paternal_463;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;gene_id=NA12877_ch_G0000193;gene_biotype=protein_coding;gene_name=RBMY1D;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000193;Name=RBMY1D
NA12877_chrY	CAT	transcript	22256123	22276791	100	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_G0000193;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=NA12877_ch_T0000501;Name=RBMY1D
NA12877_chrY	CAT	exon	22256123	22256143	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000501:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22256144	22264351	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000501:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264352	22264464	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000501:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264356	22264464	.	+	0	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000501:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22264356	22264358	.	+	0	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:NA12877_ch_T0000501;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22264465	22264938	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000501:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264939	22265042	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000501:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264939	22265042	.	+	2	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000501:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22265043	22268061	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000501:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22268062	22268239	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000501:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22268062	22268239	.	+	0	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000501:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22268240	22270154	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000501:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22270155	22270307	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000501:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22270155	22270307	.	+	2	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000501:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22270308	22272317	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000501:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22272318	22272432	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000501:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22272318	22272432	.	+	2	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000501:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22272433	22273387	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000501:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273388	22273498	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000501:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273388	22273498	.	+	1	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000501:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22273499	22273939	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000501:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273940	22274050	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000501:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273940	22274050	.	+	1	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000501:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274051	22274484	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000501:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22274485	22274595	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000501:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22274485	22274595	.	+	1	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000501:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274596	22275516	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000501:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22275517	22275627	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000501:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22275517	22275627	.	+	1	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000501:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22275628	22275714	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000501:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22275715	22275803	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000501:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22275715	22275803	.	+	1	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000501:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22275804	22276214	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000501:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22276215	22276791	.	+	.	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000501:11;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22276215	22276513	.	+	2	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000501:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22276511	22276513	.	+	0	source_transcript=hg002_chrY_paternal_463.1;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.1,hg002_chrY_paternal_463.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000501;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000501;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:NA12877_ch_T0000501;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22262343	22276791	100	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_G0000193;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=NA12877_ch_T0000502;Name=RBMY1D
NA12877_chrY	CAT	exon	22262343	22262490	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000502:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22262491	22264351	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000502:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264352	22264464	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000502:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264356	22264464	.	+	0	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000502:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22264356	22264358	.	+	0	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:NA12877_ch_T0000502;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22264465	22264938	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000502:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264939	22265042	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000502:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264939	22265042	.	+	2	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000502:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22265043	22268061	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000502:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22268062	22268239	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000502:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22268062	22268239	.	+	0	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000502:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22268240	22270154	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000502:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22270155	22270307	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000502:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22270155	22270307	.	+	2	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000502:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22270308	22272317	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000502:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22272318	22272432	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000502:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22272318	22272432	.	+	2	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000502:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22272433	22273387	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000502:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273388	22273498	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000502:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273388	22273498	.	+	1	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000502:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22273499	22273939	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000502:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273940	22274050	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000502:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273940	22274050	.	+	1	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000502:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274051	22274484	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000502:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22274485	22274595	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000502:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22274485	22274595	.	+	1	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000502:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274596	22275516	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000502:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22275517	22275627	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000502:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22275517	22275627	.	+	1	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000502:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22275628	22275714	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000502:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22275715	22275803	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000502:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22275715	22275803	.	+	1	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000502:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22275804	22276214	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000502:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22276215	22276791	.	+	.	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000502:11;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22276215	22276513	.	+	2	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000502:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22276511	22276513	.	+	0	source_transcript=hg002_chrY_paternal_463.2;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.2,hg002_chrY_paternal_463.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000502;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000502;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:NA12877_ch_T0000502;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22262343	22276791	100	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_G0000193;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=NA12877_ch_T0000503;Name=RBMY1D
NA12877_chrY	CAT	exon	22262343	22262490	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000503:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22262491	22264351	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000503:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264352	22264464	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000503:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264356	22264464	.	+	0	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000503:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22264356	22264358	.	+	0	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:NA12877_ch_T0000503;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22264465	22264938	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000503:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264939	22265042	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000503:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264939	22265042	.	+	2	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000503:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22265043	22268061	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000503:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22268062	22268239	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000503:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22268062	22268239	.	+	0	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000503:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22268240	22270154	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000503:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22270155	22270307	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000503:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22270155	22270307	.	+	2	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000503:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22270308	22272317	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000503:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22272318	22272432	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000503:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22272318	22272432	.	+	2	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000503:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22272433	22273387	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000503:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273388	22273498	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000503:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273388	22273498	.	+	1	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000503:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22273499	22273939	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000503:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273940	22274050	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000503:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273940	22274050	.	+	1	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000503:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274051	22274484	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000503:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22274485	22274595	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000503:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22274485	22274595	.	+	1	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000503:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274596	22275714	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000503:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22275715	22275803	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000503:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22275715	22275803	.	+	1	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000503:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22275804	22276214	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000503:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22276215	22276791	.	+	.	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000503:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22276215	22276513	.	+	2	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000503:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22276511	22276513	.	+	0	source_transcript=hg002_chrY_paternal_463.3;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.3,hg002_chrY_paternal_463.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000503;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000503;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:NA12877_ch_T0000503;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22262343	22276791	100	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_G0000193;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=NA12877_ch_T0000504;Name=RBMY1D
NA12877_chrY	CAT	exon	22262343	22262490	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000504:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22262491	22263163	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000504:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22263164	22263228	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000504:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22263229	22264351	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000504:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264352	22264464	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000504:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264414	22264464	.	+	0	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000504:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22264414	22264416	.	+	0	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:NA12877_ch_T0000504;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22264465	22264952	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000504:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264953	22265042	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000504:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264953	22265042	.	+	0	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000504:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22265043	22268061	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000504:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22268062	22268239	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000504:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22268062	22268239	.	+	0	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000504:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22268240	22270154	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000504:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22270155	22270307	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000504:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22270155	22270307	.	+	2	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000504:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22270308	22272317	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000504:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22272318	22272432	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000504:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22272318	22272432	.	+	2	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000504:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22272433	22273387	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000504:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273388	22273498	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000504:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273388	22273498	.	+	1	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000504:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22273499	22273939	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000504:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273940	22274050	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000504:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273940	22274050	.	+	1	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000504:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274051	22274484	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000504:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22274485	22274595	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000504:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22274485	22274595	.	+	1	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000504:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274596	22275714	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000504:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22275715	22275803	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000504:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22275715	22275803	.	+	1	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000504:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22275804	22276214	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000504:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22276215	22276791	.	+	.	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000504:11;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22276215	22276513	.	+	2	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000504:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22276511	22276513	.	+	0	source_transcript=hg002_chrY_paternal_463.4;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.4,hg002_chrY_paternal_463.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000504;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000504;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:NA12877_ch_T0000504;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22262343	22276791	100	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_G0000193;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=NA12877_ch_T0000505;Name=RBMY1D
NA12877_chrY	CAT	exon	22262343	22262490	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000505:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22262491	22264351	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000505:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264352	22264464	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000505:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264356	22264464	.	+	0	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000505:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22264356	22264358	.	+	0	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:NA12877_ch_T0000505;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22264465	22264938	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000505:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264939	22265042	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000505:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264939	22265042	.	+	2	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000505:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22265043	22268061	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000505:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22268062	22268239	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000505:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22268062	22268239	.	+	0	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000505:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22268240	22270154	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000505:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22270155	22270307	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000505:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22270155	22270307	.	+	2	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000505:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22270308	22272317	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000505:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22272318	22272432	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000505:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22272318	22272432	.	+	2	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000505:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22272433	22273387	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000505:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273388	22273498	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000505:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273388	22273498	.	+	1	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000505:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22273499	22275714	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000505:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22275715	22275803	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000505:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22275715	22275803	.	+	1	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000505:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22275804	22276214	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000505:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22276215	22276791	.	+	.	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000505:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22276215	22276513	.	+	2	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000505:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22276511	22276513	.	+	0	source_transcript=hg002_chrY_paternal_463.5;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.5,hg002_chrY_paternal_463.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000505;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000505;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:NA12877_ch_T0000505;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22262343	22278209	100	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_G0000193;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=NA12877_ch_T0000506;Name=RBMY1D
NA12877_chrY	CAT	exon	22262343	22262490	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000506:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22262491	22264351	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000506:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264352	22264464	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000506:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264356	22264464	.	+	0	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000506:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22264356	22264358	.	+	0	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:NA12877_ch_T0000506;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22264465	22264938	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000506:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264939	22265042	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000506:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264939	22265042	.	+	2	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000506:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22265043	22268061	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000506:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22268062	22268239	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000506:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22268062	22268239	.	+	0	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000506:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22268240	22270154	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000506:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22270155	22270307	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000506:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22270155	22270307	.	+	2	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000506:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22270308	22272317	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000506:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22272318	22272432	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000506:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22272318	22272432	.	+	2	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000506:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22272433	22273387	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000506:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273388	22273498	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000506:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273388	22273498	.	+	1	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000506:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22273499	22273939	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000506:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273940	22274050	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000506:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273940	22274050	.	+	1	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000506:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274051	22274484	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000506:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22274485	22274595	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000506:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22274485	22274595	.	+	1	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000506:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274596	22275516	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000506:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22275517	22275627	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000506:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22275517	22275627	.	+	1	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000506:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22275628	22275714	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000506:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22275715	22275803	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000506:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22275715	22275803	.	+	1	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000506:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22275804	22277050	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000506:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22277051	22278209	.	+	.	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000506:11;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22277051	22277058	.	+	2	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000506:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22277056	22277058	.	+	0	source_transcript=hg002_chrY_paternal_463.6;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.6,hg002_chrY_paternal_463.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000506;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000506;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:NA12877_ch_T0000506;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22262343	22288436	100	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_G0000193;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=NA12877_ch_T0000507;Name=RBMY1D
NA12877_chrY	CAT	exon	22262343	22262490	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000507:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22262491	22264351	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000507:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264352	22264464	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000507:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264356	22264464	.	+	0	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000507:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22264356	22264358	.	+	0	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:NA12877_ch_T0000507;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22264465	22264938	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000507:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22264939	22265042	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000507:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22264939	22265042	.	+	2	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000507:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22265043	22268061	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000507:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22268062	22268239	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000507:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22268062	22268239	.	+	0	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000507:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22268240	22270154	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000507:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22270155	22270307	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000507:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22270155	22270307	.	+	2	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000507:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22270308	22272317	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000507:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22272318	22272432	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000507:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22272318	22272432	.	+	2	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000507:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22272433	22273387	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000507:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273388	22273498	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000507:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273388	22273498	.	+	1	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000507:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22273499	22273939	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000507:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273940	22274050	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000507:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273940	22274050	.	+	1	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000507:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274051	22274484	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000507:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22274485	22274595	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000507:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22274485	22274595	.	+	1	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000507:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274596	22275516	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000507:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22275517	22275627	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000507:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22275517	22275627	.	+	1	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000507:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22275628	22275714	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000507:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22275715	22275803	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000507:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22275715	22275803	.	+	1	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000507:9;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22275804	22287052	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000507:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22287053	22288436	.	+	.	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000507:11;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22287053	22287129	.	+	2	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000507:10;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22287127	22287129	.	+	0	source_transcript=hg002_chrY_paternal_463.7;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.7,hg002_chrY_paternal_463.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000507;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000507;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:NA12877_ch_T0000507;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22264953	22276791	100	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_G0000193;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=NA12877_ch_T0000508;Name=RBMY1D
NA12877_chrY	CAT	exon	22264953	22265042	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000508:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22265043	22270154	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000508:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22270155	22270307	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000508:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22270184	22270307	.	+	0	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000508:0;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22270184	22270186	.	+	0	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=start_codon:NA12877_ch_T0000508;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22270308	22272317	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000508:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22272318	22272432	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000508:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22272318	22272432	.	+	2	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000508:1;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22272433	22273387	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000508:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273388	22273498	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000508:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273388	22273498	.	+	1	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000508:2;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22273499	22273939	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000508:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22273940	22274050	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000508:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22273940	22274050	.	+	1	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000508:3;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274051	22274484	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000508:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22274485	22274595	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000508:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22274485	22274595	.	+	1	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000508:4;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22274596	22275516	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000508:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22275517	22275627	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000508:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22275517	22275627	.	+	1	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000508:5;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22275628	22275714	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000508:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22275715	22275803	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000508:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22275715	22275803	.	+	1	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000508:6;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22275804	22276214	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=intron:NA12877_ch_T0000508:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22276215	22276791	.	+	.	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=exon:NA12877_ch_T0000508:8;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22276215	22276513	.	+	2	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=CDS:NA12877_ch_T0000508:7;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22276511	22276513	.	+	0	source_transcript=hg002_chrY_paternal_463.8;source_transcript_name=hg002_chrY_paternal_463.8;source_gene=hg002_chrY_paternal_463;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_463;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_463.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_463.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=hg002_chrY_paternal_463.8,hg002_chrY_paternal_463.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000508;gene_id=NA12877_ch_G0000193;Parent=NA12877_ch_T0000508;transcript_name=hg002_chrY_paternal_463.8;gene_name=RBMY1D;ID=stop_codon:NA12877_ch_T0000508;Name=RBMY1D;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22296500	22298753	.	-	.	source_gene_common_name=LOC105379266;source_gene=hg002_chrY_paternal_465;alternative_source_transcripts=hg002_chrY_paternal_465.1;gene_id=NA12877_ch_G0000194;gene_biotype=lncRNA;gene_name=LOC105379266;gene_sources=liftoff,transMap;ID=NA12877_ch_G0000194;Name=LOC105379266
NA12877_chrY	CAT	transcript	22296500	22298753	1000	-	.	source_transcript=hg002_chrY_paternal_465.1;source_transcript_name=hg002_chrY_paternal_465.1;source_gene=hg002_chrY_paternal_465;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_465;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_465.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_465.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_465.1;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000509;gene_id=NA12877_ch_G0000194;Parent=NA12877_ch_G0000194;transcript_name=hg002_chrY_paternal_465.1;gene_name=LOC105379266;ID=NA12877_ch_T0000509;Name=LOC105379266
NA12877_chrY	CAT	exon	22296500	22297780	.	-	.	source_transcript=hg002_chrY_paternal_465.1;source_transcript_name=hg002_chrY_paternal_465.1;source_gene=hg002_chrY_paternal_465;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_465;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_465.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_465.1;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000509;gene_id=NA12877_ch_G0000194;Parent=NA12877_ch_T0000509;transcript_name=hg002_chrY_paternal_465.1;gene_name=LOC105379266;ID=exon:NA12877_ch_T0000509:0;Name=LOC105379266;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22297781	22298458	.	-	.	source_transcript=hg002_chrY_paternal_465.1;source_transcript_name=hg002_chrY_paternal_465.1;source_gene=hg002_chrY_paternal_465;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_465;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_465.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_465.1;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000509;gene_id=NA12877_ch_G0000194;Parent=NA12877_ch_T0000509;transcript_name=hg002_chrY_paternal_465.1;gene_name=LOC105379266;ID=intron:NA12877_ch_T0000509:0;Name=LOC105379266;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22298459	22298753	.	-	.	source_transcript=hg002_chrY_paternal_465.1;source_transcript_name=hg002_chrY_paternal_465.1;source_gene=hg002_chrY_paternal_465;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_465;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_465.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105379266;alternative_source_transcripts=hg002_chrY_paternal_465.1;AdditionalSources=liftoff;transcript_id=NA12877_ch_T0000509;gene_id=NA12877_ch_G0000194;Parent=NA12877_ch_T0000509;transcript_name=hg002_chrY_paternal_465.1;gene_name=LOC105379266;ID=exon:NA12877_ch_T0000509:1;Name=LOC105379266;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22311061	22322127	.	-	.	source_gene_common_name=TTTY13;source_gene=hg002_chrY_paternal_466;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;gene_id=NA12877_ch_G0000195;gene_biotype=lncRNA;gene_name=TTTY13;gene_sources=liftoff;ID=NA12877_ch_G0000195;Name=TTTY13
NA12877_chrY	CAT	transcript	22311061	22322127	1000	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=NA12877_ch_T0000510;gene_id=NA12877_ch_G0000195;Parent=NA12877_ch_G0000195;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=NA12877_ch_T0000510;Name=TTTY13
NA12877_chrY	CAT	exon	22311061	22311123	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=NA12877_ch_T0000510;gene_id=NA12877_ch_G0000195;Parent=NA12877_ch_T0000510;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=exon:NA12877_ch_T0000510:0;Name=TTTY13;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22311124	22312243	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=NA12877_ch_T0000510;gene_id=NA12877_ch_G0000195;Parent=NA12877_ch_T0000510;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=intron:NA12877_ch_T0000510:0;Name=TTTY13;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22312244	22312335	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=NA12877_ch_T0000510;gene_id=NA12877_ch_G0000195;Parent=NA12877_ch_T0000510;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=exon:NA12877_ch_T0000510:1;Name=TTTY13;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22312336	22314961	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=NA12877_ch_T0000510;gene_id=NA12877_ch_G0000195;Parent=NA12877_ch_T0000510;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=intron:NA12877_ch_T0000510:1;Name=TTTY13;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22314962	22315123	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=NA12877_ch_T0000510;gene_id=NA12877_ch_G0000195;Parent=NA12877_ch_T0000510;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=exon:NA12877_ch_T0000510:2;Name=TTTY13;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22315124	22316732	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=NA12877_ch_T0000510;gene_id=NA12877_ch_G0000195;Parent=NA12877_ch_T0000510;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=intron:NA12877_ch_T0000510:2;Name=TTTY13;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22316733	22316831	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=NA12877_ch_T0000510;gene_id=NA12877_ch_G0000195;Parent=NA12877_ch_T0000510;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=exon:NA12877_ch_T0000510:3;Name=TTTY13;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22316832	22317426	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=NA12877_ch_T0000510;gene_id=NA12877_ch_G0000195;Parent=NA12877_ch_T0000510;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=intron:NA12877_ch_T0000510:3;Name=TTTY13;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22317427	22317588	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=NA12877_ch_T0000510;gene_id=NA12877_ch_G0000195;Parent=NA12877_ch_T0000510;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=exon:NA12877_ch_T0000510:4;Name=TTTY13;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22317589	22322046	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=NA12877_ch_T0000510;gene_id=NA12877_ch_G0000195;Parent=NA12877_ch_T0000510;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=intron:NA12877_ch_T0000510:4;Name=TTTY13;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22322047	22322127	.	-	.	source_transcript=hg002_chrY_paternal_466.1;source_transcript_name=hg002_chrY_paternal_466.1;source_gene=hg002_chrY_paternal_466;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_466;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_466.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_466.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=hg002_chrY_paternal_466.1,hg002_chrY_paternal_466.1;transcript_id=NA12877_ch_T0000510;gene_id=NA12877_ch_G0000195;Parent=NA12877_ch_T0000510;transcript_name=hg002_chrY_paternal_466.1;gene_name=TTTY13;ID=exon:NA12877_ch_T0000510:5;Name=TTTY13;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22496927	22511581	.	-	.	source_gene_common_name=LOC105377236;source_gene=hg002_chrY_paternal_472;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;gene_id=NA12877_ch_G0000196;gene_biotype=lncRNA;gene_name=LOC105377236;gene_sources=liftoff;ID=NA12877_ch_G0000196;Name=LOC105377236
NA12877_chrY	CAT	transcript	22496927	22510351	1000	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=NA12877_ch_T0000511;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_G0000196;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=NA12877_ch_T0000511;Name=LOC105377236
NA12877_chrY	CAT	exon	22496927	22498470	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=NA12877_ch_T0000511;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000511;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:NA12877_ch_T0000511:0;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22498471	22505849	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=NA12877_ch_T0000511;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000511;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:NA12877_ch_T0000511:0;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22505850	22505985	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=NA12877_ch_T0000511;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000511;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:NA12877_ch_T0000511:1;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22505986	22508980	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=NA12877_ch_T0000511;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000511;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:NA12877_ch_T0000511:1;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22508981	22509142	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=NA12877_ch_T0000511;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000511;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:NA12877_ch_T0000511:2;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22509143	22509386	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=NA12877_ch_T0000511;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000511;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:NA12877_ch_T0000511:2;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22509387	22510351	.	-	.	source_transcript=hg002_chrY_paternal_472.1;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.1,hg002_chrY_paternal_472.1;transcript_id=NA12877_ch_T0000511;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000511;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:NA12877_ch_T0000511:3;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22496927	22510351	1000	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=NA12877_ch_T0000512;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_G0000196;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=NA12877_ch_T0000512;Name=LOC105377236
NA12877_chrY	CAT	exon	22496927	22498470	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=NA12877_ch_T0000512;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000512;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:NA12877_ch_T0000512:0;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22498471	22505849	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=NA12877_ch_T0000512;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000512;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:NA12877_ch_T0000512:0;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22505850	22505985	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=NA12877_ch_T0000512;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000512;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:NA12877_ch_T0000512:1;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22505986	22508980	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=NA12877_ch_T0000512;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000512;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:NA12877_ch_T0000512:1;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22508981	22509055	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=NA12877_ch_T0000512;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000512;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:NA12877_ch_T0000512:2;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22509056	22509386	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=NA12877_ch_T0000512;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000512;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:NA12877_ch_T0000512:2;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22509387	22510351	.	-	.	source_transcript=hg002_chrY_paternal_472.2;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.2,hg002_chrY_paternal_472.2;transcript_id=NA12877_ch_T0000512;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000512;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:NA12877_ch_T0000512:3;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22496927	22511581	1000	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=NA12877_ch_T0000513;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_G0000196;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=NA12877_ch_T0000513;Name=LOC105377236
NA12877_chrY	CAT	exon	22496927	22498470	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=NA12877_ch_T0000513;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000513;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:NA12877_ch_T0000513:0;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22498471	22505849	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=NA12877_ch_T0000513;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000513;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:NA12877_ch_T0000513:0;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22505850	22505985	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=NA12877_ch_T0000513;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000513;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:NA12877_ch_T0000513:1;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22505986	22508980	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=NA12877_ch_T0000513;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000513;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:NA12877_ch_T0000513:1;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22508981	22509142	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=NA12877_ch_T0000513;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000513;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:NA12877_ch_T0000513:2;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22509143	22509386	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=NA12877_ch_T0000513;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000513;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:NA12877_ch_T0000513:2;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22509387	22510172	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=NA12877_ch_T0000513;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000513;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:NA12877_ch_T0000513:3;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22510173	22511425	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=NA12877_ch_T0000513;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000513;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=intron:NA12877_ch_T0000513:3;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22511426	22511581	.	-	.	source_transcript=hg002_chrY_paternal_472.3;source_transcript_name=hg002_chrY_paternal_472.1;source_gene=hg002_chrY_paternal_472;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_472;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_472.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_472.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377236;alternative_source_transcripts=hg002_chrY_paternal_472.3,hg002_chrY_paternal_472.3;transcript_id=NA12877_ch_T0000513;gene_id=NA12877_ch_G0000196;Parent=NA12877_ch_T0000513;transcript_name=hg002_chrY_paternal_472.1;gene_name=LOC105377236;ID=exon:NA12877_ch_T0000513:4;Name=LOC105377236;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22524044	22526932	.	+	.	source_gene_common_name=LOC105377237;source_gene=hg002_chrY_paternal_474;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;gene_id=NA12877_ch_G0000197;gene_biotype=lncRNA;gene_name=LOC105377237;gene_sources=liftoff;ID=NA12877_ch_G0000197;Name=LOC105377237
NA12877_chrY	CAT	transcript	22524044	22526932	1000	+	.	source_transcript=hg002_chrY_paternal_474.1;source_transcript_name=hg002_chrY_paternal_474.1;source_gene=hg002_chrY_paternal_474;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_474;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_474.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_474.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377237;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;transcript_id=NA12877_ch_T0000514;gene_id=NA12877_ch_G0000197;Parent=NA12877_ch_G0000197;transcript_name=hg002_chrY_paternal_474.1;gene_name=LOC105377237;ID=NA12877_ch_T0000514;Name=LOC105377237
NA12877_chrY	CAT	exon	22524044	22525281	.	+	.	source_transcript=hg002_chrY_paternal_474.1;source_transcript_name=hg002_chrY_paternal_474.1;source_gene=hg002_chrY_paternal_474;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_474;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_474.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377237;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;transcript_id=NA12877_ch_T0000514;gene_id=NA12877_ch_G0000197;Parent=NA12877_ch_T0000514;transcript_name=hg002_chrY_paternal_474.1;gene_name=LOC105377237;ID=exon:NA12877_ch_T0000514:0;Name=LOC105377237;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22525282	22526453	.	+	.	source_transcript=hg002_chrY_paternal_474.1;source_transcript_name=hg002_chrY_paternal_474.1;source_gene=hg002_chrY_paternal_474;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_474;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_474.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377237;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;transcript_id=NA12877_ch_T0000514;gene_id=NA12877_ch_G0000197;Parent=NA12877_ch_T0000514;transcript_name=hg002_chrY_paternal_474.1;gene_name=LOC105377237;ID=intron:NA12877_ch_T0000514:0;Name=LOC105377237;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22526454	22526613	.	+	.	source_transcript=hg002_chrY_paternal_474.1;source_transcript_name=hg002_chrY_paternal_474.1;source_gene=hg002_chrY_paternal_474;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_474;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_474.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377237;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;transcript_id=NA12877_ch_T0000514;gene_id=NA12877_ch_G0000197;Parent=NA12877_ch_T0000514;transcript_name=hg002_chrY_paternal_474.1;gene_name=LOC105377237;ID=exon:NA12877_ch_T0000514:1;Name=LOC105377237;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22526614	22526773	.	+	.	source_transcript=hg002_chrY_paternal_474.1;source_transcript_name=hg002_chrY_paternal_474.1;source_gene=hg002_chrY_paternal_474;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_474;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_474.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377237;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;transcript_id=NA12877_ch_T0000514;gene_id=NA12877_ch_G0000197;Parent=NA12877_ch_T0000514;transcript_name=hg002_chrY_paternal_474.1;gene_name=LOC105377237;ID=intron:NA12877_ch_T0000514:1;Name=LOC105377237;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22526774	22526932	.	+	.	source_transcript=hg002_chrY_paternal_474.1;source_transcript_name=hg002_chrY_paternal_474.1;source_gene=hg002_chrY_paternal_474;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_474;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_474.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377237;alternative_source_transcripts=hg002_chrY_paternal_474.1,hg002_chrY_paternal_474.1;transcript_id=NA12877_ch_T0000514;gene_id=NA12877_ch_G0000197;Parent=NA12877_ch_T0000514;transcript_name=hg002_chrY_paternal_474.1;gene_name=LOC105377237;ID=exon:NA12877_ch_T0000514:2;Name=LOC105377237;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22567854	22582303	.	-	.	source_gene_common_name=RBMY1A1;source_gene=hg002_chrY_paternal_475;alternative_source_transcripts=hg002_chrY_paternal_475.1;gene_id=NA12877_ch_G0000198;gene_biotype=protein_coding;gene_name=RBMY1A1;gene_sources=augTM,transMap;ID=NA12877_ch_G0000198;Name=RBMY1A1
NA12877_chrY	CAT	transcript	22567854	22582303	1000	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_G0000198;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=NA12877_ch_T0000515;Name=RBMY1A1
NA12877_chrY	CAT	exon	22567854	22568430	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000515:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22568132	22568430	.	-	2	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000515:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22568132	22568134	.	-	0	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=stop_codon:NA12877_ch_T0000515;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22568431	22568841	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000515:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22568842	22568930	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000515:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22568842	22568930	.	-	1	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000515:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22568931	22570048	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000515:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22570049	22570159	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000515:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22570049	22570159	.	-	1	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000515:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22570160	22570593	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000515:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22570594	22570704	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000515:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22570594	22570704	.	-	1	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000515:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22570705	22571145	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000515:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22571146	22571256	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000515:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22571146	22571256	.	-	1	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000515:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22571257	22572211	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000515:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22572212	22572326	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000515:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22572212	22572326	.	-	2	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000515:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22572327	22574336	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000515:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22574337	22574489	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000515:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22574337	22574489	.	-	2	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000515:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22574490	22576404	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000515:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22576405	22576582	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000515:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22576405	22576582	.	-	0	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000515:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22576583	22579601	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000515:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22579602	22579705	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000515:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22579602	22579705	.	-	2	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000515:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22579706	22580181	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000515:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22580182	22580294	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000515:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22580182	22580290	.	-	0	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000515:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22580288	22580290	.	-	0	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=start_codon:NA12877_ch_T0000515;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22580295	22582155	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000515:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22582156	22582303	.	-	.	source_transcript=hg002_chrY_paternal_475.1;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000515;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000515;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000515:10;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22567854	22582303	1000	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_G0000198;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=NA12877_ch_T0000516;Name=RBMY1A1
NA12877_chrY	CAT	exon	22567854	22568430	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000516:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22568132	22568430	.	-	2	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000516:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22568132	22568134	.	-	0	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=stop_codon:NA12877_ch_T0000516;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22568431	22568841	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000516:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22568842	22568930	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000516:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22568842	22568930	.	-	1	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000516:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22568931	22569016	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000516:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22569017	22569127	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000516:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22569017	22569127	.	-	1	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000516:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22569128	22570048	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000516:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22570049	22570159	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000516:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22570049	22570159	.	-	1	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000516:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22570160	22570593	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000516:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22570594	22570704	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000516:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22570594	22570704	.	-	1	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000516:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22570705	22571145	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000516:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22571146	22571256	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000516:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22571146	22571256	.	-	1	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000516:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22571257	22572211	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000516:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22572212	22572326	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000516:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22572212	22572326	.	-	2	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000516:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22572327	22574336	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000516:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22574337	22574489	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000516:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22574337	22574460	.	-	0	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000516:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22574458	22574460	.	-	0	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=start_codon:NA12877_ch_T0000516;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22574490	22579601	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000516:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22579602	22579705	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000516:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22579706	22580181	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000516:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22580182	22580294	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000516:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22580295	22582155	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000516:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22582156	22582303	.	-	.	source_transcript=hg002_chrY_paternal_475.2;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.2;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000516;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000516;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000516:10;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22567854	22582303	1000	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_G0000198;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=NA12877_ch_T0000517;Name=RBMY1A1
NA12877_chrY	CAT	exon	22567854	22568430	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000517:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22568132	22568430	.	-	2	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000517:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22568132	22568134	.	-	0	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=stop_codon:NA12877_ch_T0000517;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22568431	22568841	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000517:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22568842	22568930	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000517:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22568842	22568930	.	-	1	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000517:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22568931	22569016	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000517:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22569017	22569127	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000517:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22569017	22569127	.	-	1	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000517:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22569128	22570048	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000517:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22570049	22570159	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000517:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22570049	22570159	.	-	1	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000517:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22570160	22570593	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000517:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22570594	22570704	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000517:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22570594	22570704	.	-	1	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000517:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22570705	22571145	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000517:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22571146	22571256	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000517:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22571146	22571256	.	-	1	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000517:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22571257	22572211	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000517:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22572212	22572326	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000517:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22572212	22572326	.	-	2	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000517:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22572327	22574336	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000517:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22574337	22574489	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000517:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22574337	22574489	.	-	2	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000517:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22574490	22576404	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000517:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22576405	22576582	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000517:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22576405	22576582	.	-	0	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000517:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22576583	22579601	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000517:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22579602	22579705	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000517:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22579602	22579705	.	-	2	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000517:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22579706	22580181	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000517:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22580182	22580294	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000517:10;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22580182	22580290	.	-	0	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000517:10;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22580288	22580290	.	-	0	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=start_codon:NA12877_ch_T0000517;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22580295	22582155	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000517:10;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22582156	22582303	.	-	.	source_transcript=hg002_chrY_paternal_475.3;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.3;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.3;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000517;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000517;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000517:11;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22568842	22582303	1000	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_G0000198;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=NA12877_ch_T0000518;Name=RBMY1A1
NA12877_chrY	CAT	exon	22568842	22568930	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000518:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22568843	22568930	.	-	1	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000518:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22568931	22569016	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000518:0;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22569017	22569127	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000518:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22569017	22569127	.	-	1	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000518:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22569128	22570048	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000518:1;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22570049	22570159	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000518:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22570049	22570159	.	-	1	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000518:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22570160	22570593	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000518:2;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22570594	22570704	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000518:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22570594	22570704	.	-	1	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000518:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22570705	22571145	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000518:3;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22571146	22571256	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000518:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22571146	22571256	.	-	1	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000518:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22571257	22572211	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000518:4;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22572212	22572326	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000518:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22572212	22572326	.	-	2	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000518:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22572327	22574336	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000518:5;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22574337	22574489	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000518:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22574337	22574489	.	-	2	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000518:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22574490	22576404	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000518:6;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22576405	22576582	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000518:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22576405	22576582	.	-	0	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000518:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22576583	22579601	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000518:7;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22579602	22579705	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000518:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22579602	22579705	.	-	2	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000518:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22579706	22580181	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000518:8;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22580182	22580294	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000518:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22580182	22580290	.	-	0	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=CDS:NA12877_ch_T0000518:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22580288	22580290	.	-	0	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=start_codon:NA12877_ch_T0000518;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22580295	22582155	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=intron:NA12877_ch_T0000518:9;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22582156	22582303	.	-	.	source_transcript=hg002_chrY_paternal_475.4;source_transcript_name=hg002_chrY_paternal_475.1;source_gene=hg002_chrY_paternal_475;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_475;gene_biotype=protein_coding;transcript_biotype=NA;alignment_id=hg002_chrY_paternal_475.4;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_475.4;transcript_score=299.926;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=hg002_chrY_paternal_475.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000518;gene_id=NA12877_ch_G0000198;Parent=NA12877_ch_T0000518;transcript_name=hg002_chrY_paternal_475.1;gene_name=RBMY1A1;ID=exon:NA12877_ch_T0000518:10;Name=RBMY1A1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22589954	22605809	.	-	.	source_gene_common_name=RBMY1E;source_gene=hg002_chrY_paternal_477;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;gene_id=NA12877_ch_G0000199;gene_biotype=protein_coding;gene_name=RBMY1E;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000199;Name=RBMY1E
NA12877_chrY	CAT	transcript	22589954	22605809	100	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_G0000199;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=NA12877_ch_T0000519;Name=RBMY1E
NA12877_chrY	CAT	exon	22589954	22591135	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000519:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22591128	22591135	.	-	2	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000519:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22591128	22591130	.	-	0	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=stop_codon:NA12877_ch_T0000519;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22591136	22592382	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000519:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22592383	22592471	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000519:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22592383	22592471	.	-	1	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000519:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22592472	22592557	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000519:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22592558	22592668	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000519:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22592558	22592668	.	-	1	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000519:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22592669	22593589	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000519:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22593590	22593700	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000519:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22593590	22593700	.	-	1	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000519:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22593701	22594134	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000519:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22594135	22594245	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000519:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22594135	22594245	.	-	1	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000519:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22594246	22594686	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000519:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22594687	22594797	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000519:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22594687	22594797	.	-	1	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000519:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22594798	22595752	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000519:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22595753	22595867	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000519:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22595753	22595867	.	-	2	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000519:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22595868	22597877	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000519:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22597878	22598030	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000519:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22597878	22598030	.	-	2	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000519:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22598031	22599945	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000519:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22599946	22600123	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000519:8;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22599946	22600123	.	-	0	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000519:8;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22600124	22603142	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000519:8;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22603143	22603246	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000519:9;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22603143	22603246	.	-	2	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000519:9;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22603247	22603722	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000519:9;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22603723	22603835	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000519:10;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22603723	22603831	.	-	0	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000519:10;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22603829	22603831	.	-	0	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=start_codon:NA12877_ch_T0000519;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22603836	22605696	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000519:10;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22605697	22605809	.	-	.	source_transcript=hg002_chrY_paternal_477.1;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.1,hg002_chrY_paternal_477.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000519;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000519;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000519:11;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22591399	22603233	100	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_G0000199;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=NA12877_ch_T0000520;Name=RBMY1E
NA12877_chrY	CAT	exon	22591399	22591971	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000520:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22591673	22591971	.	-	2	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000520:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22591673	22591675	.	-	0	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=stop_codon:NA12877_ch_T0000520;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22591972	22592382	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000520:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22592383	22592471	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000520:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22592383	22592471	.	-	1	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000520:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22592472	22592557	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000520:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22592558	22592668	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000520:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22592558	22592668	.	-	1	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000520:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22592669	22593589	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000520:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22593590	22593700	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000520:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22593590	22593700	.	-	1	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000520:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22593701	22594134	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000520:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22594135	22594245	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000520:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22594135	22594245	.	-	1	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000520:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22594246	22594686	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000520:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22594687	22594797	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000520:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22594687	22594797	.	-	1	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000520:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22594798	22595752	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000520:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22595753	22595867	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000520:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22595753	22595867	.	-	2	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000520:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22595868	22597877	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000520:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22597878	22598030	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000520:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22597878	22598001	.	-	0	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000520:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22597999	22598001	.	-	0	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=start_codon:NA12877_ch_T0000520;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22598031	22603142	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000520:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22603143	22603233	.	-	.	source_transcript=hg002_chrY_paternal_477.2;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.2,hg002_chrY_paternal_477.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000520;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000520;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000520:8;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22591399	22605809	100	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_G0000199;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=NA12877_ch_T0000521;Name=RBMY1E
NA12877_chrY	CAT	exon	22591399	22591971	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000521:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22591673	22591971	.	-	2	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000521:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22591673	22591675	.	-	0	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=stop_codon:NA12877_ch_T0000521;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22591972	22592382	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000521:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22592383	22592471	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000521:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22592383	22592471	.	-	1	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000521:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22592472	22592557	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000521:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22592558	22592668	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000521:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22592558	22592668	.	-	1	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000521:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22592669	22593589	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000521:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22593590	22593700	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000521:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22593590	22593700	.	-	1	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000521:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22593701	22594134	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000521:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22594135	22594245	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000521:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22594135	22594245	.	-	1	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000521:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22594246	22594686	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000521:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22594687	22594797	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000521:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22594687	22594797	.	-	1	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000521:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22594798	22595752	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000521:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22595753	22595867	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000521:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22595753	22595867	.	-	2	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000521:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22595868	22597877	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000521:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22597878	22598030	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000521:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22597878	22598030	.	-	2	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000521:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22598031	22599945	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000521:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22599946	22600123	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000521:8;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22599946	22600123	.	-	0	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000521:8;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22600124	22603142	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000521:8;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22603143	22603246	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000521:9;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22603143	22603246	.	-	2	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000521:9;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22603247	22603722	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000521:9;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22603723	22603835	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000521:10;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22603723	22603831	.	-	0	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000521:10;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22603829	22603831	.	-	0	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=start_codon:NA12877_ch_T0000521;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22603836	22605696	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000521:10;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22605697	22605809	.	-	.	source_transcript=hg002_chrY_paternal_477.3;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.3,hg002_chrY_paternal_477.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000521;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000521;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000521:11;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22591399	22605809	100	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_G0000199;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=NA12877_ch_T0000522;Name=RBMY1E
NA12877_chrY	CAT	exon	22591399	22591971	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000522:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22591673	22591971	.	-	2	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000522:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22591673	22591675	.	-	0	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=stop_codon:NA12877_ch_T0000522;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22591972	22592382	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000522:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22592383	22592471	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000522:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22592383	22592471	.	-	1	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000522:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22592472	22593589	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000522:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22593590	22593700	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000522:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22593590	22593700	.	-	1	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000522:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22593701	22594134	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000522:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22594135	22594245	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000522:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22594135	22594245	.	-	1	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000522:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22594246	22594686	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000522:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22594687	22594797	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000522:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22594687	22594797	.	-	1	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000522:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22594798	22595752	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000522:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22595753	22595867	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000522:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22595753	22595867	.	-	2	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000522:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22595868	22597877	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000522:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22597878	22598030	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000522:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22597878	22598030	.	-	2	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000522:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22598031	22599945	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000522:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22599946	22600123	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000522:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22599946	22600123	.	-	0	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000522:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22600124	22603142	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000522:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22603143	22603246	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000522:8;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22603143	22603246	.	-	2	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000522:8;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22603247	22603722	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000522:8;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22603723	22603835	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000522:9;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22603723	22603831	.	-	0	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000522:9;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22603829	22603831	.	-	0	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=start_codon:NA12877_ch_T0000522;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22603836	22605696	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000522:9;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22605697	22605809	.	-	.	source_transcript=hg002_chrY_paternal_477.4;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.4,hg002_chrY_paternal_477.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000522;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000522;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000522:10;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22591399	22605809	100	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_G0000199;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=NA12877_ch_T0000523;Name=RBMY1E
NA12877_chrY	CAT	exon	22591399	22591971	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000523:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22591673	22591971	.	-	2	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000523:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22591673	22591675	.	-	0	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=stop_codon:NA12877_ch_T0000523;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22591972	22592382	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000523:0;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22592383	22592471	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000523:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22592383	22592471	.	-	1	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000523:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22592472	22594686	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000523:1;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22594687	22594797	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000523:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22594687	22594797	.	-	1	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000523:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22594798	22595752	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000523:2;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22595753	22595867	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000523:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22595753	22595867	.	-	2	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000523:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22595868	22597877	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000523:3;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22597878	22598030	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000523:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22597878	22598030	.	-	2	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000523:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22598031	22599945	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000523:4;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22599946	22600123	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000523:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22599946	22600123	.	-	0	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000523:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22600124	22603142	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000523:5;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22603143	22603246	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000523:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22603143	22603246	.	-	2	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000523:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22603247	22603722	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000523:6;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22603723	22603835	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000523:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22603723	22603831	.	-	0	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=CDS:NA12877_ch_T0000523:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22603829	22603831	.	-	0	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=start_codon:NA12877_ch_T0000523;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22603836	22605696	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=intron:NA12877_ch_T0000523:7;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22605697	22605809	.	-	.	source_transcript=hg002_chrY_paternal_477.5;source_transcript_name=hg002_chrY_paternal_477.5;source_gene=hg002_chrY_paternal_477;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_477;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_477.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_477.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=hg002_chrY_paternal_477.5,hg002_chrY_paternal_477.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000523;gene_id=NA12877_ch_G0000199;Parent=NA12877_ch_T0000523;transcript_name=hg002_chrY_paternal_477.5;gene_name=RBMY1E;ID=exon:NA12877_ch_T0000523:8;Name=RBMY1E;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22716127	22718124	.	+	.	source_gene_common_name=LOC107987357;source_gene=hg002_chrY_paternal_510;gene_id=NA12877_ch_G0000200;gene_biotype=lncRNA;gene_name=LOC107987357;gene_sources=liftoff;ID=NA12877_ch_G0000200;Name=LOC107987357
NA12877_chrY	CAT	transcript	22716127	22718124	1000	+	.	source_transcript=hg002_chrY_paternal_510.1;source_transcript_name=hg002_chrY_paternal_510.1;source_gene=hg002_chrY_paternal_510;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_510;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_510.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_510.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987357;transcript_id=NA12877_ch_T0000524;gene_id=NA12877_ch_G0000200;Parent=NA12877_ch_G0000200;transcript_name=hg002_chrY_paternal_510.1;gene_name=LOC107987357;ID=NA12877_ch_T0000524;Name=LOC107987357
NA12877_chrY	CAT	exon	22716127	22716209	.	+	.	source_transcript=hg002_chrY_paternal_510.1;source_transcript_name=hg002_chrY_paternal_510.1;source_gene=hg002_chrY_paternal_510;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_510;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_510.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_510.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987357;transcript_id=NA12877_ch_T0000524;gene_id=NA12877_ch_G0000200;Parent=NA12877_ch_T0000524;transcript_name=hg002_chrY_paternal_510.1;gene_name=LOC107987357;ID=exon:NA12877_ch_T0000524:0;Name=LOC107987357;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22716210	22716326	.	+	.	source_transcript=hg002_chrY_paternal_510.1;source_transcript_name=hg002_chrY_paternal_510.1;source_gene=hg002_chrY_paternal_510;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_510;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_510.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_510.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987357;transcript_id=NA12877_ch_T0000524;gene_id=NA12877_ch_G0000200;Parent=NA12877_ch_T0000524;transcript_name=hg002_chrY_paternal_510.1;gene_name=LOC107987357;ID=intron:NA12877_ch_T0000524:0;Name=LOC107987357;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22716327	22716387	.	+	.	source_transcript=hg002_chrY_paternal_510.1;source_transcript_name=hg002_chrY_paternal_510.1;source_gene=hg002_chrY_paternal_510;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_510;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_510.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_510.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987357;transcript_id=NA12877_ch_T0000524;gene_id=NA12877_ch_G0000200;Parent=NA12877_ch_T0000524;transcript_name=hg002_chrY_paternal_510.1;gene_name=LOC107987357;ID=exon:NA12877_ch_T0000524:1;Name=LOC107987357;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22716388	22717922	.	+	.	source_transcript=hg002_chrY_paternal_510.1;source_transcript_name=hg002_chrY_paternal_510.1;source_gene=hg002_chrY_paternal_510;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_510;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_510.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_510.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987357;transcript_id=NA12877_ch_T0000524;gene_id=NA12877_ch_G0000200;Parent=NA12877_ch_T0000524;transcript_name=hg002_chrY_paternal_510.1;gene_name=LOC107987357;ID=intron:NA12877_ch_T0000524:1;Name=LOC107987357;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22717923	22718124	.	+	.	source_transcript=hg002_chrY_paternal_510.1;source_transcript_name=hg002_chrY_paternal_510.1;source_gene=hg002_chrY_paternal_510;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_510;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_510.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_510.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987357;transcript_id=NA12877_ch_T0000524;gene_id=NA12877_ch_G0000200;Parent=NA12877_ch_T0000524;transcript_name=hg002_chrY_paternal_510.1;gene_name=LOC107987357;ID=exon:NA12877_ch_T0000524:2;Name=LOC107987357;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22759533	22783786	.	-	.	source_gene_common_name=PRY;source_gene=hg002_chrY_paternal_486;alternative_source_transcripts=hg002_chrY_paternal_486.1;gene_id=NA12877_ch_G0000201;gene_biotype=protein_coding;gene_name=PRY;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000201;Name=PRY
NA12877_chrY	CAT	transcript	22759533	22783786	100	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_G0000201;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=NA12877_ch_T0000525;Name=PRY
NA12877_chrY	CAT	exon	22759533	22760358	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=exon:NA12877_ch_T0000525:0;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22760100	22760358	.	-	1	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=CDS:NA12877_ch_T0000525:0;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22760100	22760102	.	-	0	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=stop_codon:NA12877_ch_T0000525;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22760359	22769856	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=intron:NA12877_ch_T0000525:0;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22769857	22769972	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=exon:NA12877_ch_T0000525:1;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22769857	22769972	.	-	0	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=CDS:NA12877_ch_T0000525:1;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22769973	22772547	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=intron:NA12877_ch_T0000525:1;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22772548	22772668	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=exon:NA12877_ch_T0000525:2;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22772548	22772616	.	-	0	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=CDS:NA12877_ch_T0000525:2;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22772614	22772616	.	-	0	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=start_codon:NA12877_ch_T0000525;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22772669	22783510	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=intron:NA12877_ch_T0000525:2;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22783511	22783597	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=exon:NA12877_ch_T0000525:3;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22783598	22783698	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=intron:NA12877_ch_T0000525:3;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22783699	22783786	.	-	.	source_transcript=hg002_chrY_paternal_486.1;source_transcript_name=hg002_chrY_paternal_486.1;source_gene=hg002_chrY_paternal_486;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_486;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_486.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_486.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY;alternative_source_transcripts=hg002_chrY_paternal_486.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000525;gene_id=NA12877_ch_G0000201;Parent=NA12877_ch_T0000525;transcript_name=hg002_chrY_paternal_486.1;gene_name=PRY;ID=exon:NA12877_ch_T0000525:4;Name=PRY;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22789468	22835317	.	-	.	source_gene_common_name=LOC102725532;source_gene=hg002_chrY_paternal_487;alternative_source_transcripts=hg002_chrY_paternal_487.1;gene_id=NA12877_ch_G0000202;gene_biotype=lncRNA;gene_name=LOC102725532;gene_sources=liftoff;ID=NA12877_ch_G0000202;Name=LOC102725532
NA12877_chrY	CAT	transcript	22789468	22835317	1000	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_G0000202;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=NA12877_ch_T0000526;Name=LOC102725532
NA12877_chrY	CAT	exon	22789468	22790145	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:NA12877_ch_T0000526:0;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22790146	22790660	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:NA12877_ch_T0000526:0;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22790661	22790778	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:NA12877_ch_T0000526:1;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22790779	22791322	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:NA12877_ch_T0000526:1;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22791323	22791519	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:NA12877_ch_T0000526:2;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22791520	22791639	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:NA12877_ch_T0000526:2;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22791640	22791725	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:NA12877_ch_T0000526:3;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22791726	22793525	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:NA12877_ch_T0000526:3;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22793526	22793861	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:NA12877_ch_T0000526:4;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22793862	22795327	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:NA12877_ch_T0000526:4;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22795328	22795417	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:NA12877_ch_T0000526:5;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22795418	22809059	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:NA12877_ch_T0000526:5;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22809060	22809413	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:NA12877_ch_T0000526:6;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22809414	22809843	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:NA12877_ch_T0000526:6;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22809844	22809962	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:NA12877_ch_T0000526:7;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22809963	22817140	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:NA12877_ch_T0000526:7;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22817141	22817226	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:NA12877_ch_T0000526:8;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22817227	22817534	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:NA12877_ch_T0000526:8;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22817535	22817757	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:NA12877_ch_T0000526:9;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22817758	22827728	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:NA12877_ch_T0000526:9;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22827729	22827869	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:NA12877_ch_T0000526:10;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22827870	22834416	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:NA12877_ch_T0000526:10;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22834417	22834726	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:NA12877_ch_T0000526:11;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22834727	22835060	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=intron:NA12877_ch_T0000526:11;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22835061	22835317	.	-	.	source_transcript=hg002_chrY_paternal_487.1;source_transcript_name=hg002_chrY_paternal_487.1;source_gene=hg002_chrY_paternal_487;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_487;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_487.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_487.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102725532;alternative_source_transcripts=hg002_chrY_paternal_487.1;transcript_id=NA12877_ch_T0000526;gene_id=NA12877_ch_G0000202;Parent=NA12877_ch_T0000526;transcript_name=hg002_chrY_paternal_487.1;gene_name=LOC102725532;ID=exon:NA12877_ch_T0000526:12;Name=LOC102725532;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22832742	22834608	.	+	.	source_gene_common_name=TTTY6;source_gene=hg002_chrY_paternal_504;gene_id=NA12877_ch_G0000203;gene_biotype=lncRNA;gene_name=TTTY6;gene_sources=liftoff;ID=NA12877_ch_G0000203;Name=TTTY6
NA12877_chrY	CAT	transcript	22832742	22834608	1000	+	.	source_transcript=hg002_chrY_paternal_504.1;source_transcript_name=hg002_chrY_paternal_504.1;source_gene=hg002_chrY_paternal_504;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_504;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_504.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_504.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=NA12877_ch_T0000527;gene_id=NA12877_ch_G0000203;Parent=NA12877_ch_G0000203;transcript_name=hg002_chrY_paternal_504.1;gene_name=TTTY6;ID=NA12877_ch_T0000527;Name=TTTY6
NA12877_chrY	CAT	exon	22832742	22832856	.	+	.	source_transcript=hg002_chrY_paternal_504.1;source_transcript_name=hg002_chrY_paternal_504.1;source_gene=hg002_chrY_paternal_504;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_504;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_504.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_504.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=NA12877_ch_T0000527;gene_id=NA12877_ch_G0000203;Parent=NA12877_ch_T0000527;transcript_name=hg002_chrY_paternal_504.1;gene_name=TTTY6;ID=exon:NA12877_ch_T0000527:0;Name=TTTY6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22832857	22833074	.	+	.	source_transcript=hg002_chrY_paternal_504.1;source_transcript_name=hg002_chrY_paternal_504.1;source_gene=hg002_chrY_paternal_504;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_504;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_504.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_504.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=NA12877_ch_T0000527;gene_id=NA12877_ch_G0000203;Parent=NA12877_ch_T0000527;transcript_name=hg002_chrY_paternal_504.1;gene_name=TTTY6;ID=intron:NA12877_ch_T0000527:0;Name=TTTY6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22833075	22833212	.	+	.	source_transcript=hg002_chrY_paternal_504.1;source_transcript_name=hg002_chrY_paternal_504.1;source_gene=hg002_chrY_paternal_504;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_504;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_504.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_504.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=NA12877_ch_T0000527;gene_id=NA12877_ch_G0000203;Parent=NA12877_ch_T0000527;transcript_name=hg002_chrY_paternal_504.1;gene_name=TTTY6;ID=exon:NA12877_ch_T0000527:1;Name=TTTY6;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22833213	22834369	.	+	.	source_transcript=hg002_chrY_paternal_504.1;source_transcript_name=hg002_chrY_paternal_504.1;source_gene=hg002_chrY_paternal_504;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_504;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_504.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_504.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=NA12877_ch_T0000527;gene_id=NA12877_ch_G0000203;Parent=NA12877_ch_T0000527;transcript_name=hg002_chrY_paternal_504.1;gene_name=TTTY6;ID=intron:NA12877_ch_T0000527:1;Name=TTTY6;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22834370	22834608	.	+	.	source_transcript=hg002_chrY_paternal_504.1;source_transcript_name=hg002_chrY_paternal_504.1;source_gene=hg002_chrY_paternal_504;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_504;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_504.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_504.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=NA12877_ch_T0000527;gene_id=NA12877_ch_G0000203;Parent=NA12877_ch_T0000527;transcript_name=hg002_chrY_paternal_504.1;gene_name=TTTY6;ID=exon:NA12877_ch_T0000527:2;Name=TTTY6;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22849331	22870786	.	-	.	source_gene_common_name=RBMY1J;source_gene=hg002_chrY_paternal_489;alternative_source_transcripts=hg002_chrY_paternal_489.1;gene_id=NA12877_ch_G0000204;gene_biotype=protein_coding;gene_name=RBMY1J;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000204;Name=RBMY1J
NA12877_chrY	CAT	transcript	22849331	22870786	100	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_G0000204;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=NA12877_ch_T0000528;Name=RBMY1J
NA12877_chrY	CAT	exon	22849331	22850834	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000528:0;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22850824	22850834	.	-	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000528:0;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22850824	22850826	.	-	0	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=stop_codon:NA12877_ch_T0000528;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22850835	22853427	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000528:0;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22853428	22853574	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000528:1;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22853428	22853574	.	-	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000528:1;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22853575	22857307	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000528:1;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22857308	22857396	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000528:2;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22857308	22857396	.	-	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000528:2;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22857397	22857482	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000528:2;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22857483	22857593	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000528:3;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22857483	22857593	.	-	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000528:3;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22857594	22858516	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000528:3;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22858517	22858627	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000528:4;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22858517	22858627	.	-	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000528:4;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22858628	22859061	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000528:4;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22859062	22859172	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000528:5;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22859062	22859172	.	-	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000528:5;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22859173	22859612	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000528:5;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22859613	22859723	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000528:6;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22859613	22859723	.	-	1	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000528:6;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22859724	22860678	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000528:6;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22860679	22860793	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000528:7;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22860679	22860793	.	-	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000528:7;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22860794	22862803	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000528:7;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22862804	22862956	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000528:8;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22862804	22862956	.	-	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000528:8;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22862957	22864871	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000528:8;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22864872	22865049	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000528:9;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22864872	22865049	.	-	0	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000528:9;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22865050	22868068	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000528:9;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22868069	22868172	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000528:10;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22868069	22868172	.	-	2	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000528:10;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22868173	22868638	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000528:10;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22868639	22868751	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000528:11;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22868639	22868747	.	-	0	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000528:11;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22868745	22868747	.	-	0	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=start_codon:NA12877_ch_T0000528;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22868752	22870612	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000528:11;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22870613	22870786	.	-	.	source_transcript=hg002_chrY_paternal_489.1;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000528;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000528;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000528:12;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22856320	22868160	100	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_G0000204;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=NA12877_ch_T0000529;Name=RBMY1J
NA12877_chrY	CAT	exon	22856320	22856896	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000529:0;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22856598	22856896	.	-	2	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000529:0;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22856598	22856600	.	-	0	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=stop_codon:NA12877_ch_T0000529;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22856897	22857307	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000529:0;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22857308	22857396	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000529:1;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22857308	22857396	.	-	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000529:1;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22857397	22857482	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000529:1;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22857483	22857593	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000529:2;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22857483	22857593	.	-	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000529:2;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22857594	22858516	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000529:2;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22858517	22858627	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000529:3;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22858517	22858627	.	-	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000529:3;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22858628	22859061	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000529:3;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22859062	22859172	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000529:4;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22859062	22859172	.	-	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000529:4;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22859173	22859612	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000529:4;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22859613	22859723	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000529:5;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22859613	22859723	.	-	1	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000529:5;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22859724	22860678	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000529:5;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22860679	22860793	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000529:6;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22860679	22860793	.	-	2	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000529:6;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22860794	22862803	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000529:6;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22862804	22862956	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000529:7;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22862804	22862927	.	-	0	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000529:7;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22862925	22862927	.	-	0	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=start_codon:NA12877_ch_T0000529;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22862957	22868068	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000529:7;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22868069	22868160	.	-	.	source_transcript=hg002_chrY_paternal_489.2;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000529;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000529;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000529:8;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22856320	22870786	100	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_G0000204;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=NA12877_ch_T0000530;Name=RBMY1J
NA12877_chrY	CAT	exon	22856320	22856896	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000530:0;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22856598	22856896	.	-	2	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000530:0;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22856598	22856600	.	-	0	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=stop_codon:NA12877_ch_T0000530;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22856897	22857307	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000530:0;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22857308	22857396	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000530:1;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22857308	22857396	.	-	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000530:1;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22857397	22857482	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000530:1;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22857483	22857593	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000530:2;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22857483	22857593	.	-	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000530:2;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22857594	22858516	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000530:2;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22858517	22858627	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000530:3;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22858517	22858627	.	-	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000530:3;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22858628	22859061	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000530:3;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22859062	22859172	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000530:4;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22859062	22859172	.	-	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000530:4;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22859173	22859612	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000530:4;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22859613	22859723	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000530:5;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22859613	22859723	.	-	1	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000530:5;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22859724	22860678	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000530:5;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22860679	22860793	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000530:6;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22860679	22860793	.	-	2	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000530:6;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22860794	22862803	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000530:6;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22862804	22862956	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000530:7;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22862804	22862956	.	-	2	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000530:7;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22862957	22864871	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000530:7;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22864872	22865049	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000530:8;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22864872	22865049	.	-	0	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000530:8;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22865050	22868068	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000530:8;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22868069	22868172	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000530:9;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22868069	22868172	.	-	2	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000530:9;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22868173	22868638	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000530:9;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22868639	22868751	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000530:10;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22868639	22868747	.	-	0	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000530:10;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22868745	22868747	.	-	0	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=start_codon:NA12877_ch_T0000530;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22868752	22870612	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000530:10;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22870613	22870786	.	-	.	source_transcript=hg002_chrY_paternal_489.3;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000530;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000530;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000530:11;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	22856320	22870786	100	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_G0000204;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=NA12877_ch_T0000531;Name=RBMY1J
NA12877_chrY	CAT	exon	22856320	22856896	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000531:0;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22856598	22856896	.	-	2	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000531:0;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	22856598	22856600	.	-	0	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=stop_codon:NA12877_ch_T0000531;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22856897	22857307	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000531:0;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22857308	22857396	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000531:1;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22857308	22857396	.	-	1	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000531:1;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22857397	22858516	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000531:1;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22858517	22858627	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000531:2;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22858517	22858627	.	-	1	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000531:2;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22858628	22859061	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000531:2;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22859062	22859172	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000531:3;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22859062	22859172	.	-	1	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000531:3;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22859173	22859612	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000531:3;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22859613	22859723	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000531:4;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22859613	22859723	.	-	1	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000531:4;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22859724	22860678	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000531:4;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22860679	22860793	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000531:5;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22860679	22860793	.	-	2	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000531:5;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22860794	22862803	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000531:5;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22862804	22862956	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000531:6;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22862804	22862956	.	-	2	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000531:6;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22862957	22864871	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000531:6;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22864872	22865049	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000531:7;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22864872	22865049	.	-	0	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000531:7;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22865050	22868068	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000531:7;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22868069	22868172	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000531:8;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22868069	22868172	.	-	2	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000531:8;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22868173	22868638	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000531:8;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22868639	22868751	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000531:9;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	22868639	22868747	.	-	0	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=CDS:NA12877_ch_T0000531:9;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	22868745	22868747	.	-	0	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=start_codon:NA12877_ch_T0000531;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22868752	22870612	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=intron:NA12877_ch_T0000531:9;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22870613	22870786	.	-	.	source_transcript=hg002_chrY_paternal_489.4;source_transcript_name=hg002_chrY_paternal_489.4;source_gene=hg002_chrY_paternal_489;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_489;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_489.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_489.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=hg002_chrY_paternal_489.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000531;gene_id=NA12877_ch_G0000204;Parent=NA12877_ch_T0000531;transcript_name=hg002_chrY_paternal_489.4;gene_name=RBMY1J;ID=exon:NA12877_ch_T0000531:10;Name=RBMY1J;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22984706	22986784	.	-	.	source_gene_common_name=TTTY5;source_gene=hg002_chrY_paternal_497;alternative_source_transcripts=hg002_chrY_paternal_497.1;gene_id=NA12877_ch_G0000205;gene_biotype=lncRNA;gene_name=TTTY5;gene_sources=liftoff;ID=NA12877_ch_G0000205;Name=TTTY5
NA12877_chrY	CAT	transcript	22984706	22986784	1000	-	.	source_transcript=hg002_chrY_paternal_497.1;source_transcript_name=hg002_chrY_paternal_497.1;source_gene=hg002_chrY_paternal_497;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_497;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_497.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_497.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY5;alternative_source_transcripts=hg002_chrY_paternal_497.1;transcript_id=NA12877_ch_T0000532;gene_id=NA12877_ch_G0000205;Parent=NA12877_ch_G0000205;transcript_name=hg002_chrY_paternal_497.1;gene_name=TTTY5;ID=NA12877_ch_T0000532;Name=TTTY5
NA12877_chrY	CAT	exon	22984706	22985696	.	-	.	source_transcript=hg002_chrY_paternal_497.1;source_transcript_name=hg002_chrY_paternal_497.1;source_gene=hg002_chrY_paternal_497;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_497;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_497.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_497.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY5;alternative_source_transcripts=hg002_chrY_paternal_497.1;transcript_id=NA12877_ch_T0000532;gene_id=NA12877_ch_G0000205;Parent=NA12877_ch_T0000532;transcript_name=hg002_chrY_paternal_497.1;gene_name=TTTY5;ID=exon:NA12877_ch_T0000532:0;Name=TTTY5;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22985697	22986213	.	-	.	source_transcript=hg002_chrY_paternal_497.1;source_transcript_name=hg002_chrY_paternal_497.1;source_gene=hg002_chrY_paternal_497;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_497;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_497.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_497.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY5;alternative_source_transcripts=hg002_chrY_paternal_497.1;transcript_id=NA12877_ch_T0000532;gene_id=NA12877_ch_G0000205;Parent=NA12877_ch_T0000532;transcript_name=hg002_chrY_paternal_497.1;gene_name=TTTY5;ID=intron:NA12877_ch_T0000532:0;Name=TTTY5;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22986214	22986784	.	-	.	source_transcript=hg002_chrY_paternal_497.1;source_transcript_name=hg002_chrY_paternal_497.1;source_gene=hg002_chrY_paternal_497;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_497;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_497.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_497.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY5;alternative_source_transcripts=hg002_chrY_paternal_497.1;transcript_id=NA12877_ch_T0000532;gene_id=NA12877_ch_G0000205;Parent=NA12877_ch_T0000532;transcript_name=hg002_chrY_paternal_497.1;gene_name=TTTY5;ID=exon:NA12877_ch_T0000532:1;Name=TTTY5;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	22996771	23004117	.	+	.	source_gene_common_name=RBMY2FP;source_gene=hg002_chrY_paternal_495;alternative_source_transcripts=hg002_chrY_paternal_495.1;gene_id=NA12877_ch_G0000206;gene_biotype=transcribed_pseudogene;gene_name=RBMY2FP;gene_sources=liftoff;ID=NA12877_ch_G0000206;Name=RBMY2FP
NA12877_chrY	CAT	transcript	22996771	23004117	1000	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1;transcript_id=NA12877_ch_T0000533;gene_id=NA12877_ch_G0000206;Parent=NA12877_ch_G0000206;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=NA12877_ch_T0000533;Name=RBMY2FP
NA12877_chrY	CAT	exon	22996771	22996882	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1;transcript_id=NA12877_ch_T0000533;gene_id=NA12877_ch_G0000206;Parent=NA12877_ch_T0000533;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=exon:NA12877_ch_T0000533:0;Name=RBMY2FP;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22996883	22998771	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1;transcript_id=NA12877_ch_T0000533;gene_id=NA12877_ch_G0000206;Parent=NA12877_ch_T0000533;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=intron:NA12877_ch_T0000533:0;Name=RBMY2FP;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22998772	22998884	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1;transcript_id=NA12877_ch_T0000533;gene_id=NA12877_ch_G0000206;Parent=NA12877_ch_T0000533;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=exon:NA12877_ch_T0000533:1;Name=RBMY2FP;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22998885	22999306	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1;transcript_id=NA12877_ch_T0000533;gene_id=NA12877_ch_G0000206;Parent=NA12877_ch_T0000533;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=intron:NA12877_ch_T0000533:1;Name=RBMY2FP;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	22999307	22999410	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1;transcript_id=NA12877_ch_T0000533;gene_id=NA12877_ch_G0000206;Parent=NA12877_ch_T0000533;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=exon:NA12877_ch_T0000533:2;Name=RBMY2FP;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	22999411	23002404	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1;transcript_id=NA12877_ch_T0000533;gene_id=NA12877_ch_G0000206;Parent=NA12877_ch_T0000533;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=intron:NA12877_ch_T0000533:2;Name=RBMY2FP;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23002405	23004117	.	+	.	source_transcript=hg002_chrY_paternal_495.1;source_transcript_name=hg002_chrY_paternal_495.1;source_gene=hg002_chrY_paternal_495;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_495;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_495.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_495.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;alternative_source_transcripts=hg002_chrY_paternal_495.1;transcript_id=NA12877_ch_T0000533;gene_id=NA12877_ch_G0000206;Parent=NA12877_ch_T0000533;transcript_name=hg002_chrY_paternal_495.1;gene_name=RBMY2FP;ID=exon:NA12877_ch_T0000533:3;Name=RBMY2FP;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23004590	23008296	.	+	.	source_gene_common_name=LOC100652931;source_gene=hg002_chrY_paternal_494;alternative_source_transcripts=hg002_chrY_paternal_494.1;gene_id=NA12877_ch_G0000207;gene_biotype=transcribed_pseudogene;gene_name=LOC100652931;gene_sources=liftoff;ID=NA12877_ch_G0000207;Name=LOC100652931
NA12877_chrY	CAT	transcript	23004590	23008296	1000	+	.	source_transcript=hg002_chrY_paternal_494.1;source_transcript_name=hg002_chrY_paternal_494.1;source_gene=hg002_chrY_paternal_494;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_494;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_494.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_494.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC100652931;alternative_source_transcripts=hg002_chrY_paternal_494.1;transcript_id=NA12877_ch_T0000534;gene_id=NA12877_ch_G0000207;Parent=NA12877_ch_G0000207;transcript_name=hg002_chrY_paternal_494.1;gene_name=LOC100652931;ID=NA12877_ch_T0000534;Name=LOC100652931
NA12877_chrY	CAT	exon	23004590	23004659	.	+	.	source_transcript=hg002_chrY_paternal_494.1;source_transcript_name=hg002_chrY_paternal_494.1;source_gene=hg002_chrY_paternal_494;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_494;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_494.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_494.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC100652931;alternative_source_transcripts=hg002_chrY_paternal_494.1;transcript_id=NA12877_ch_T0000534;gene_id=NA12877_ch_G0000207;Parent=NA12877_ch_T0000534;transcript_name=hg002_chrY_paternal_494.1;gene_name=LOC100652931;ID=exon:NA12877_ch_T0000534:0;Name=LOC100652931;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23004660	23006694	.	+	.	source_transcript=hg002_chrY_paternal_494.1;source_transcript_name=hg002_chrY_paternal_494.1;source_gene=hg002_chrY_paternal_494;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_494;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_494.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_494.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC100652931;alternative_source_transcripts=hg002_chrY_paternal_494.1;transcript_id=NA12877_ch_T0000534;gene_id=NA12877_ch_G0000207;Parent=NA12877_ch_T0000534;transcript_name=hg002_chrY_paternal_494.1;gene_name=LOC100652931;ID=intron:NA12877_ch_T0000534:0;Name=LOC100652931;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23006695	23006809	.	+	.	source_transcript=hg002_chrY_paternal_494.1;source_transcript_name=hg002_chrY_paternal_494.1;source_gene=hg002_chrY_paternal_494;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_494;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_494.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_494.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC100652931;alternative_source_transcripts=hg002_chrY_paternal_494.1;transcript_id=NA12877_ch_T0000534;gene_id=NA12877_ch_G0000207;Parent=NA12877_ch_T0000534;transcript_name=hg002_chrY_paternal_494.1;gene_name=LOC100652931;ID=exon:NA12877_ch_T0000534:1;Name=LOC100652931;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23006810	23008274	.	+	.	source_transcript=hg002_chrY_paternal_494.1;source_transcript_name=hg002_chrY_paternal_494.1;source_gene=hg002_chrY_paternal_494;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_494;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_494.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_494.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC100652931;alternative_source_transcripts=hg002_chrY_paternal_494.1;transcript_id=NA12877_ch_T0000534;gene_id=NA12877_ch_G0000207;Parent=NA12877_ch_T0000534;transcript_name=hg002_chrY_paternal_494.1;gene_name=LOC100652931;ID=intron:NA12877_ch_T0000534:1;Name=LOC100652931;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23008275	23008296	.	+	.	source_transcript=hg002_chrY_paternal_494.1;source_transcript_name=hg002_chrY_paternal_494.1;source_gene=hg002_chrY_paternal_494;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_494;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_494.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_494.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC100652931;alternative_source_transcripts=hg002_chrY_paternal_494.1;transcript_id=NA12877_ch_T0000534;gene_id=NA12877_ch_G0000207;Parent=NA12877_ch_T0000534;transcript_name=hg002_chrY_paternal_494.1;gene_name=LOC100652931;ID=exon:NA12877_ch_T0000534:2;Name=LOC100652931;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23091408	23111452	.	+	.	source_gene_common_name=RBMY1F;source_gene=hg002_chrY_paternal_502;alternative_source_transcripts=hg002_chrY_paternal_502.1;gene_id=NA12877_ch_G0000208;gene_biotype=protein_coding;gene_name=RBMY1F;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000208;Name=RBMY1F
NA12877_chrY	CAT	transcript	23091408	23105795	100	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_G0000208;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=NA12877_ch_T0000535;Name=RBMY1F
NA12877_chrY	CAT	exon	23091408	23091496	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000535:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23091497	23093357	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000535:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23093358	23093470	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000535:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23093362	23093470	.	+	0	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000535:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23093362	23093364	.	+	0	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=start_codon:NA12877_ch_T0000535;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23093471	23093938	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000535:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23093939	23094042	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000535:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23093939	23094042	.	+	2	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000535:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23094043	23097065	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000535:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23097066	23097243	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000535:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23097066	23097243	.	+	0	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000535:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23097244	23099158	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000535:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23099159	23099311	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000535:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23099159	23099311	.	+	2	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000535:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23099312	23101321	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000535:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23101322	23101436	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000535:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23101322	23101436	.	+	2	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000535:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23101437	23102391	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000535:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23102392	23102502	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000535:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23102392	23102502	.	+	1	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000535:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23102503	23102942	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000535:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23102943	23103053	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000535:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23102943	23103053	.	+	1	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000535:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23103054	23103487	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000535:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23103488	23103598	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000535:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23103488	23103598	.	+	1	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000535:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23103599	23104521	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000535:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23104522	23104632	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000535:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23104522	23104632	.	+	1	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000535:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23104633	23104718	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000535:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23104719	23104802	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000535:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23104719	23104802	.	+	1	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000535:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23104803	23105218	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000535:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23105219	23105795	.	+	.	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000535:11;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23105219	23105291	.	+	1	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000535:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23105289	23105291	.	+	0	source_transcript=hg002_chrY_paternal_502.1;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000535;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000535;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=stop_codon:NA12877_ch_T0000535;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23091408	23105795	100	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_G0000208;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=NA12877_ch_T0000536;Name=RBMY1F
NA12877_chrY	CAT	exon	23091408	23091496	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000536:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23091497	23093357	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000536:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23093358	23093470	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000536:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23093362	23093470	.	+	0	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000536:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23093362	23093364	.	+	0	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=start_codon:NA12877_ch_T0000536;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23093471	23093938	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000536:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23093939	23094042	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000536:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23093939	23094042	.	+	2	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000536:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23094043	23097065	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000536:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23097066	23097243	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000536:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23097066	23097243	.	+	0	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000536:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23097244	23099158	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000536:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23099159	23099311	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000536:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23099159	23099311	.	+	2	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000536:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23099312	23101321	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000536:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23101322	23101436	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000536:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23101322	23101436	.	+	2	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000536:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23101437	23102391	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000536:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23102392	23102502	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000536:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23102392	23102502	.	+	1	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000536:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23102503	23102942	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000536:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23102943	23103053	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000536:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23102943	23103053	.	+	1	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000536:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23103054	23103487	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000536:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23103488	23103598	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000536:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23103488	23103598	.	+	1	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000536:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23103599	23104718	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000536:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23104719	23104807	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000536:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23104719	23104807	.	+	1	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000536:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23104808	23105218	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000536:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23105219	23105795	.	+	.	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000536:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23105219	23105517	.	+	2	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000536:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23105515	23105517	.	+	0	source_transcript=hg002_chrY_paternal_502.2;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000536;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000536;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=stop_codon:NA12877_ch_T0000536;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23091408	23105795	100	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_G0000208;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=NA12877_ch_T0000537;Name=RBMY1F
NA12877_chrY	CAT	exon	23091408	23091496	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000537:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23091497	23093357	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000537:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23093358	23093470	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000537:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23093362	23093470	.	+	0	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000537:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23093362	23093364	.	+	0	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=start_codon:NA12877_ch_T0000537;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23093471	23093938	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000537:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23093939	23094042	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000537:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23093939	23094042	.	+	2	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000537:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23094043	23097065	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000537:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23097066	23097243	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000537:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23097066	23097243	.	+	0	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000537:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23097244	23099158	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000537:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23099159	23099311	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000537:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23099159	23099311	.	+	2	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000537:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23099312	23101321	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000537:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23101322	23101436	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000537:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23101322	23101436	.	+	2	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000537:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23101437	23102391	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000537:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23102392	23102502	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000537:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23102392	23102502	.	+	1	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000537:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23102503	23102942	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000537:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23102943	23103053	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000537:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23102943	23103053	.	+	1	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000537:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23103054	23103487	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000537:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23103488	23103598	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000537:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23103488	23103598	.	+	1	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000537:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23103599	23104521	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000537:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23104522	23104632	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000537:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23104522	23104632	.	+	1	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000537:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23104633	23104718	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000537:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23104719	23104807	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000537:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23104719	23104807	.	+	1	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000537:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23104808	23105218	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000537:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23105219	23105795	.	+	.	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000537:11;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23105219	23105517	.	+	2	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000537:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23105515	23105517	.	+	0	source_transcript=hg002_chrY_paternal_502.3;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000537;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000537;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=stop_codon:NA12877_ch_T0000537;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23091408	23111452	100	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_G0000208;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=NA12877_ch_T0000538;Name=RBMY1F
NA12877_chrY	CAT	exon	23091408	23091496	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000538:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23091497	23093357	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000538:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23093358	23093470	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000538:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23093362	23093470	.	+	0	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000538:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23093362	23093364	.	+	0	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=start_codon:NA12877_ch_T0000538;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23093471	23093938	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000538:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23093939	23094042	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000538:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23093939	23094042	.	+	2	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000538:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23094043	23097065	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000538:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23097066	23097243	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000538:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23097066	23097243	.	+	0	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000538:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23097244	23099158	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000538:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23099159	23099311	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000538:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23099159	23099311	.	+	2	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000538:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23099312	23101321	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000538:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23101322	23101436	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000538:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23101322	23101436	.	+	2	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000538:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23101437	23102391	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000538:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23102392	23102502	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000538:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23102392	23102502	.	+	1	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000538:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23102503	23102942	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000538:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23102943	23103053	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000538:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23102943	23103053	.	+	1	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000538:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23103054	23103487	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000538:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23103488	23103598	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000538:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23103488	23103598	.	+	1	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000538:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23103599	23104521	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000538:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23104522	23104632	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000538:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23104522	23104632	.	+	1	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000538:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23104633	23104718	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000538:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23104719	23104807	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000538:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23104719	23104807	.	+	1	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000538:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23104808	23108540	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000538:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23108541	23108687	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000538:11;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23108541	23108687	.	+	2	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000538:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23108688	23111280	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000538:11;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23111281	23111452	.	+	.	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000538:12;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23111281	23111291	.	+	2	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000538:11;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23111289	23111291	.	+	0	source_transcript=hg002_chrY_paternal_502.4;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000538;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000538;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=stop_codon:NA12877_ch_T0000538;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23091408	23111452	100	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_G0000208;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=NA12877_ch_T0000539;Name=RBMY1F
NA12877_chrY	CAT	exon	23091408	23091496	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000539:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23091497	23093357	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000539:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23093358	23093470	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000539:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23093362	23093470	.	+	0	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000539:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23093362	23093364	.	+	0	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=start_codon:NA12877_ch_T0000539;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23093471	23093938	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000539:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23093939	23094042	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000539:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23093939	23094042	.	+	2	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000539:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23094043	23097065	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000539:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23097066	23097243	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000539:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23097066	23097243	.	+	0	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000539:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23097244	23099158	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000539:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23099159	23099311	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000539:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23099159	23099311	.	+	2	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000539:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23099312	23101321	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000539:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23101322	23101436	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000539:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23101322	23101436	.	+	2	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000539:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23101437	23102391	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000539:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23102392	23102502	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000539:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23102392	23102502	.	+	1	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000539:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23102503	23102942	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000539:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23102943	23103053	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000539:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23102943	23103053	.	+	1	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000539:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23103054	23103487	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000539:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23103488	23103598	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000539:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23103488	23103598	.	+	1	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000539:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23103599	23104718	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000539:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23104719	23104807	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000539:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23104719	23104807	.	+	1	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000539:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23104808	23108540	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000539:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23108541	23108687	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000539:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23108541	23108687	.	+	2	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000539:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23108688	23111280	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000539:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23111281	23111452	.	+	.	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000539:11;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23111281	23111291	.	+	2	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000539:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23111289	23111291	.	+	0	source_transcript=hg002_chrY_paternal_502.5;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000539;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000539;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=stop_codon:NA12877_ch_T0000539;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23091408	23111452	100	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_G0000208;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=NA12877_ch_T0000540;Name=RBMY1F
NA12877_chrY	CAT	exon	23091408	23091496	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000540:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23091497	23093357	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000540:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23093358	23093470	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000540:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23093362	23093470	.	+	0	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000540:0;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23093362	23093364	.	+	0	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=start_codon:NA12877_ch_T0000540;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23093471	23093938	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000540:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23093939	23094042	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000540:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23093939	23094042	.	+	2	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000540:1;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23094043	23097065	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000540:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23097066	23097243	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000540:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23097066	23097243	.	+	0	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000540:2;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23097244	23099158	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000540:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23099159	23099311	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000540:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23099159	23099311	.	+	2	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000540:3;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23099312	23101321	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000540:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23101322	23101436	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000540:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23101322	23101436	.	+	2	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000540:4;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23101437	23102391	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000540:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23102392	23102502	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000540:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23102392	23102502	.	+	1	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000540:5;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23102503	23102942	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000540:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23102943	23103053	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000540:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23102943	23103053	.	+	1	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000540:6;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23103054	23103487	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000540:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23103488	23103598	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000540:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23103488	23103598	.	+	1	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000540:7;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23103599	23104718	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000540:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23104719	23104807	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000540:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23104719	23104807	.	+	1	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000540:8;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23104808	23111280	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=intron:NA12877_ch_T0000540:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23111281	23111452	.	+	.	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=exon:NA12877_ch_T0000540:10;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23111281	23111291	.	+	2	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=CDS:NA12877_ch_T0000540:9;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23111289	23111291	.	+	0	source_transcript=hg002_chrY_paternal_502.6;source_transcript_name=hg002_chrY_paternal_502.6;source_gene=hg002_chrY_paternal_502;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_502;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_502.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_502.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;alternative_source_transcripts=hg002_chrY_paternal_502.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000540;gene_id=NA12877_ch_G0000208;Parent=NA12877_ch_T0000540;transcript_name=hg002_chrY_paternal_502.6;gene_name=RBMY1F;ID=stop_codon:NA12877_ch_T0000540;Name=RBMY1F;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23126854	23172634	.	+	.	source_gene_common_name=LOC101929148;source_gene=hg002_chrY_paternal_503;alternative_source_transcripts=hg002_chrY_paternal_503.1;gene_id=NA12877_ch_G0000209;gene_biotype=lncRNA;gene_name=LOC101929148;gene_sources=liftoff;ID=NA12877_ch_G0000209;Name=LOC101929148
NA12877_chrY	CAT	transcript	23126854	23172634	1000	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_G0000209;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=NA12877_ch_T0000541;Name=LOC101929148
NA12877_chrY	CAT	exon	23126854	23127054	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:NA12877_ch_T0000541:0;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23127055	23127388	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:NA12877_ch_T0000541:0;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23127389	23127698	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:NA12877_ch_T0000541:1;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23127699	23134245	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:NA12877_ch_T0000541:1;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23134246	23134386	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:NA12877_ch_T0000541:2;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23134387	23144356	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:NA12877_ch_T0000541:2;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23144357	23144579	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:NA12877_ch_T0000541:3;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23144580	23144887	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:NA12877_ch_T0000541:3;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23144888	23144973	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:NA12877_ch_T0000541:4;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23144974	23152152	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:NA12877_ch_T0000541:4;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23152153	23152271	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:NA12877_ch_T0000541:5;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23152272	23152701	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:NA12877_ch_T0000541:5;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23152702	23153055	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:NA12877_ch_T0000541:6;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23153056	23166684	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:NA12877_ch_T0000541:6;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23166685	23166774	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:NA12877_ch_T0000541:7;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23166775	23168240	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:NA12877_ch_T0000541:7;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23168241	23168576	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:NA12877_ch_T0000541:8;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23168577	23170376	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:NA12877_ch_T0000541:8;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23170377	23170462	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:NA12877_ch_T0000541:9;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23170463	23170582	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:NA12877_ch_T0000541:9;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23170583	23170779	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:NA12877_ch_T0000541:10;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23170780	23171323	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:NA12877_ch_T0000541:10;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23171324	23171441	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:NA12877_ch_T0000541:11;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23171442	23171956	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=intron:NA12877_ch_T0000541:11;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23171957	23172634	.	+	.	source_transcript=hg002_chrY_paternal_503.1;source_transcript_name=hg002_chrY_paternal_503.1;source_gene=hg002_chrY_paternal_503;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_503;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_503.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_503.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101929148;alternative_source_transcripts=hg002_chrY_paternal_503.1;transcript_id=NA12877_ch_T0000541;gene_id=NA12877_ch_G0000209;Parent=NA12877_ch_T0000541;transcript_name=hg002_chrY_paternal_503.1;gene_name=LOC101929148;ID=exon:NA12877_ch_T0000541:12;Name=LOC101929148;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23127504	23129351	.	-	.	source_gene_common_name=TTTY6B;source_gene=hg002_chrY_paternal_488;gene_id=NA12877_ch_G0000210;gene_biotype=lncRNA;gene_name=TTTY6B;gene_sources=liftoff;ID=NA12877_ch_G0000210;Name=TTTY6B
NA12877_chrY	CAT	transcript	23127504	23129351	1000	-	.	source_transcript=hg002_chrY_paternal_488.1;source_transcript_name=hg002_chrY_paternal_488.1;source_gene=hg002_chrY_paternal_488;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_488;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_488.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_488.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6B;transcript_id=NA12877_ch_T0000542;gene_id=NA12877_ch_G0000210;Parent=NA12877_ch_G0000210;transcript_name=hg002_chrY_paternal_488.1;gene_name=TTTY6B;ID=NA12877_ch_T0000542;Name=TTTY6B
NA12877_chrY	CAT	exon	23127504	23127745	.	-	.	source_transcript=hg002_chrY_paternal_488.1;source_transcript_name=hg002_chrY_paternal_488.1;source_gene=hg002_chrY_paternal_488;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_488;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_488.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_488.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6B;transcript_id=NA12877_ch_T0000542;gene_id=NA12877_ch_G0000210;Parent=NA12877_ch_T0000542;transcript_name=hg002_chrY_paternal_488.1;gene_name=TTTY6B;ID=exon:NA12877_ch_T0000542:0;Name=TTTY6B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23127746	23128902	.	-	.	source_transcript=hg002_chrY_paternal_488.1;source_transcript_name=hg002_chrY_paternal_488.1;source_gene=hg002_chrY_paternal_488;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_488;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_488.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_488.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6B;transcript_id=NA12877_ch_T0000542;gene_id=NA12877_ch_G0000210;Parent=NA12877_ch_T0000542;transcript_name=hg002_chrY_paternal_488.1;gene_name=TTTY6B;ID=intron:NA12877_ch_T0000542:0;Name=TTTY6B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23128903	23129040	.	-	.	source_transcript=hg002_chrY_paternal_488.1;source_transcript_name=hg002_chrY_paternal_488.1;source_gene=hg002_chrY_paternal_488;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_488;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_488.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_488.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6B;transcript_id=NA12877_ch_T0000542;gene_id=NA12877_ch_G0000210;Parent=NA12877_ch_T0000542;transcript_name=hg002_chrY_paternal_488.1;gene_name=TTTY6B;ID=exon:NA12877_ch_T0000542:1;Name=TTTY6B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23129041	23129258	.	-	.	source_transcript=hg002_chrY_paternal_488.1;source_transcript_name=hg002_chrY_paternal_488.1;source_gene=hg002_chrY_paternal_488;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_488;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_488.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_488.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6B;transcript_id=NA12877_ch_T0000542;gene_id=NA12877_ch_G0000210;Parent=NA12877_ch_T0000542;transcript_name=hg002_chrY_paternal_488.1;gene_name=TTTY6B;ID=intron:NA12877_ch_T0000542:1;Name=TTTY6B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23129259	23129351	.	-	.	source_transcript=hg002_chrY_paternal_488.1;source_transcript_name=hg002_chrY_paternal_488.1;source_gene=hg002_chrY_paternal_488;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_488;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_488.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_488.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6B;transcript_id=NA12877_ch_T0000542;gene_id=NA12877_ch_G0000210;Parent=NA12877_ch_T0000542;transcript_name=hg002_chrY_paternal_488.1;gene_name=TTTY6B;ID=exon:NA12877_ch_T0000542:2;Name=TTTY6B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23178316	23202557	.	+	.	source_gene_common_name=PRY2;source_gene=hg002_chrY_paternal_505;alternative_source_transcripts=hg002_chrY_paternal_505.1;gene_id=NA12877_ch_G0000211;gene_biotype=protein_coding;gene_name=PRY2;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000211;Name=PRY2
NA12877_chrY	CAT	transcript	23178316	23202557	100	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_G0000211;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=NA12877_ch_T0000543;Name=PRY2
NA12877_chrY	CAT	exon	23178316	23178403	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=exon:NA12877_ch_T0000543:0;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23178404	23178504	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=intron:NA12877_ch_T0000543:0;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23178505	23178591	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=exon:NA12877_ch_T0000543:1;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23178592	23189432	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=intron:NA12877_ch_T0000543:1;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23189433	23189553	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=exon:NA12877_ch_T0000543:2;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23189485	23189553	.	+	0	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=CDS:NA12877_ch_T0000543:0;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23189485	23189487	.	+	0	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=start_codon:NA12877_ch_T0000543;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23189554	23192128	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=intron:NA12877_ch_T0000543:2;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23192129	23192244	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=exon:NA12877_ch_T0000543:3;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23192129	23192244	.	+	0	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=CDS:NA12877_ch_T0000543:1;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23192245	23201731	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=intron:NA12877_ch_T0000543:3;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23201732	23202557	.	+	.	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=exon:NA12877_ch_T0000543:4;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23201732	23201990	.	+	1	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=CDS:NA12877_ch_T0000543:2;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23201988	23201990	.	+	0	source_transcript=hg002_chrY_paternal_505.1;source_transcript_name=hg002_chrY_paternal_505.1;source_gene=hg002_chrY_paternal_505;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_505;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_505.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRY2;alternative_source_transcripts=hg002_chrY_paternal_505.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000543;gene_id=NA12877_ch_G0000211;Parent=NA12877_ch_T0000543;transcript_name=hg002_chrY_paternal_505.1;gene_name=PRY2;ID=stop_codon:NA12877_ch_T0000543;Name=PRY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23243969	23245996	.	-	.	source_gene_common_name=LOC107987356;source_gene=hg002_chrY_paternal_481;gene_id=NA12877_ch_G0000212;gene_biotype=lncRNA;gene_name=LOC107987356;gene_sources=liftoff;ID=NA12877_ch_G0000212;Name=LOC107987356
NA12877_chrY	CAT	transcript	23243969	23245996	1000	-	.	source_transcript=hg002_chrY_paternal_481.1;source_transcript_name=hg002_chrY_paternal_481.1;source_gene=hg002_chrY_paternal_481;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_481;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_481.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_481.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987356;transcript_id=NA12877_ch_T0000544;gene_id=NA12877_ch_G0000212;Parent=NA12877_ch_G0000212;transcript_name=hg002_chrY_paternal_481.1;gene_name=LOC107987356;ID=NA12877_ch_T0000544;Name=LOC107987356
NA12877_chrY	CAT	exon	23243969	23244170	.	-	.	source_transcript=hg002_chrY_paternal_481.1;source_transcript_name=hg002_chrY_paternal_481.1;source_gene=hg002_chrY_paternal_481;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_481;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_481.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_481.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987356;transcript_id=NA12877_ch_T0000544;gene_id=NA12877_ch_G0000212;Parent=NA12877_ch_T0000544;transcript_name=hg002_chrY_paternal_481.1;gene_name=LOC107987356;ID=exon:NA12877_ch_T0000544:0;Name=LOC107987356;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23244171	23245705	.	-	.	source_transcript=hg002_chrY_paternal_481.1;source_transcript_name=hg002_chrY_paternal_481.1;source_gene=hg002_chrY_paternal_481;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_481;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_481.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_481.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987356;transcript_id=NA12877_ch_T0000544;gene_id=NA12877_ch_G0000212;Parent=NA12877_ch_T0000544;transcript_name=hg002_chrY_paternal_481.1;gene_name=LOC107987356;ID=intron:NA12877_ch_T0000544:0;Name=LOC107987356;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23245706	23245766	.	-	.	source_transcript=hg002_chrY_paternal_481.1;source_transcript_name=hg002_chrY_paternal_481.1;source_gene=hg002_chrY_paternal_481;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_481;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_481.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_481.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987356;transcript_id=NA12877_ch_T0000544;gene_id=NA12877_ch_G0000212;Parent=NA12877_ch_T0000544;transcript_name=hg002_chrY_paternal_481.1;gene_name=LOC107987356;ID=exon:NA12877_ch_T0000544:1;Name=LOC107987356;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23245767	23245883	.	-	.	source_transcript=hg002_chrY_paternal_481.1;source_transcript_name=hg002_chrY_paternal_481.1;source_gene=hg002_chrY_paternal_481;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_481;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_481.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_481.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987356;transcript_id=NA12877_ch_T0000544;gene_id=NA12877_ch_G0000212;Parent=NA12877_ch_T0000544;transcript_name=hg002_chrY_paternal_481.1;gene_name=LOC107987356;ID=intron:NA12877_ch_T0000544:1;Name=LOC107987356;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23245884	23245996	.	-	.	source_transcript=hg002_chrY_paternal_481.1;source_transcript_name=hg002_chrY_paternal_481.1;source_gene=hg002_chrY_paternal_481;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_481;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_481.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_481.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987356;transcript_id=NA12877_ch_T0000544;gene_id=NA12877_ch_G0000212;Parent=NA12877_ch_T0000544;transcript_name=hg002_chrY_paternal_481.1;gene_name=LOC107987356;ID=exon:NA12877_ch_T0000544:2;Name=LOC107987356;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23474136	23485374	.	+	.	source_gene_common_name=LOC107987348;source_gene=hg002_chrY_paternal_515;alternative_source_transcripts=hg002_chrY_paternal_515.1,hg002_chrY_paternal_515.1;gene_id=NA12877_ch_G0000213;gene_biotype=lncRNA;gene_name=LOC107987348;gene_sources=liftoff;ID=NA12877_ch_G0000213;Name=LOC107987348
NA12877_chrY	CAT	transcript	23474136	23485374	1000	+	.	source_transcript=hg002_chrY_paternal_515.1;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.1,hg002_chrY_paternal_515.1;transcript_id=NA12877_ch_T0000545;gene_id=NA12877_ch_G0000213;Parent=NA12877_ch_G0000213;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=NA12877_ch_T0000545;Name=LOC107987348
NA12877_chrY	CAT	exon	23474136	23474591	.	+	.	source_transcript=hg002_chrY_paternal_515.1;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.1,hg002_chrY_paternal_515.1;transcript_id=NA12877_ch_T0000545;gene_id=NA12877_ch_G0000213;Parent=NA12877_ch_T0000545;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=exon:NA12877_ch_T0000545:0;Name=LOC107987348;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23474592	23480561	.	+	.	source_transcript=hg002_chrY_paternal_515.1;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.1,hg002_chrY_paternal_515.1;transcript_id=NA12877_ch_T0000545;gene_id=NA12877_ch_G0000213;Parent=NA12877_ch_T0000545;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=intron:NA12877_ch_T0000545:0;Name=LOC107987348;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23480562	23482726	.	+	.	source_transcript=hg002_chrY_paternal_515.1;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.1,hg002_chrY_paternal_515.1;transcript_id=NA12877_ch_T0000545;gene_id=NA12877_ch_G0000213;Parent=NA12877_ch_T0000545;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=exon:NA12877_ch_T0000545:1;Name=LOC107987348;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23482727	23483367	.	+	.	source_transcript=hg002_chrY_paternal_515.1;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.1,hg002_chrY_paternal_515.1;transcript_id=NA12877_ch_T0000545;gene_id=NA12877_ch_G0000213;Parent=NA12877_ch_T0000545;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=intron:NA12877_ch_T0000545:1;Name=LOC107987348;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23483368	23485374	.	+	.	source_transcript=hg002_chrY_paternal_515.1;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.1,hg002_chrY_paternal_515.1;transcript_id=NA12877_ch_T0000545;gene_id=NA12877_ch_G0000213;Parent=NA12877_ch_T0000545;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=exon:NA12877_ch_T0000545:2;Name=LOC107987348;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23474136	23485374	1000	+	.	source_transcript=hg002_chrY_paternal_515.2;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.2,hg002_chrY_paternal_515.2;transcript_id=NA12877_ch_T0000546;gene_id=NA12877_ch_G0000213;Parent=NA12877_ch_G0000213;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=NA12877_ch_T0000546;Name=LOC107987348
NA12877_chrY	CAT	exon	23474136	23474591	.	+	.	source_transcript=hg002_chrY_paternal_515.2;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.2,hg002_chrY_paternal_515.2;transcript_id=NA12877_ch_T0000546;gene_id=NA12877_ch_G0000213;Parent=NA12877_ch_T0000546;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=exon:NA12877_ch_T0000546:0;Name=LOC107987348;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23474592	23480093	.	+	.	source_transcript=hg002_chrY_paternal_515.2;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.2,hg002_chrY_paternal_515.2;transcript_id=NA12877_ch_T0000546;gene_id=NA12877_ch_G0000213;Parent=NA12877_ch_T0000546;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=intron:NA12877_ch_T0000546:0;Name=LOC107987348;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23480094	23482726	.	+	.	source_transcript=hg002_chrY_paternal_515.2;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.2,hg002_chrY_paternal_515.2;transcript_id=NA12877_ch_T0000546;gene_id=NA12877_ch_G0000213;Parent=NA12877_ch_T0000546;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=exon:NA12877_ch_T0000546:1;Name=LOC107987348;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23482727	23483367	.	+	.	source_transcript=hg002_chrY_paternal_515.2;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.2,hg002_chrY_paternal_515.2;transcript_id=NA12877_ch_T0000546;gene_id=NA12877_ch_G0000213;Parent=NA12877_ch_T0000546;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=intron:NA12877_ch_T0000546:1;Name=LOC107987348;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23483368	23485374	.	+	.	source_transcript=hg002_chrY_paternal_515.2;source_transcript_name=hg002_chrY_paternal_515.1;source_gene=hg002_chrY_paternal_515;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_515;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_515.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_515.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987348;alternative_source_transcripts=hg002_chrY_paternal_515.2,hg002_chrY_paternal_515.2;transcript_id=NA12877_ch_T0000546;gene_id=NA12877_ch_G0000213;Parent=NA12877_ch_T0000546;transcript_name=hg002_chrY_paternal_515.1;gene_name=LOC107987348;ID=exon:NA12877_ch_T0000546:2;Name=LOC107987348;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23539507	23540638	.	+	.	source_gene_common_name=TTTY17A;source_gene=hg002_chrY_paternal_516;alternative_source_transcripts=hg002_chrY_paternal_516.1;gene_id=NA12877_ch_G0000214;gene_biotype=lncRNA;gene_name=TTTY17A;gene_sources=liftoff;ID=NA12877_ch_G0000214;Name=TTTY17A
NA12877_chrY	CAT	transcript	23539507	23540638	1000	+	.	source_transcript=hg002_chrY_paternal_516.1;source_transcript_name=hg002_chrY_paternal_516.1;source_gene=hg002_chrY_paternal_516;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_516;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_516.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_516.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17A;alternative_source_transcripts=hg002_chrY_paternal_516.1;transcript_id=NA12877_ch_T0000547;gene_id=NA12877_ch_G0000214;Parent=NA12877_ch_G0000214;transcript_name=hg002_chrY_paternal_516.1;gene_name=TTTY17A;ID=NA12877_ch_T0000547;Name=TTTY17A
NA12877_chrY	CAT	exon	23539507	23539566	.	+	.	source_transcript=hg002_chrY_paternal_516.1;source_transcript_name=hg002_chrY_paternal_516.1;source_gene=hg002_chrY_paternal_516;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_516;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_516.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_516.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17A;alternative_source_transcripts=hg002_chrY_paternal_516.1;transcript_id=NA12877_ch_T0000547;gene_id=NA12877_ch_G0000214;Parent=NA12877_ch_T0000547;transcript_name=hg002_chrY_paternal_516.1;gene_name=TTTY17A;ID=exon:NA12877_ch_T0000547:0;Name=TTTY17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23539567	23540532	.	+	.	source_transcript=hg002_chrY_paternal_516.1;source_transcript_name=hg002_chrY_paternal_516.1;source_gene=hg002_chrY_paternal_516;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_516;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_516.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_516.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17A;alternative_source_transcripts=hg002_chrY_paternal_516.1;transcript_id=NA12877_ch_T0000547;gene_id=NA12877_ch_G0000214;Parent=NA12877_ch_T0000547;transcript_name=hg002_chrY_paternal_516.1;gene_name=TTTY17A;ID=intron:NA12877_ch_T0000547:0;Name=TTTY17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23540533	23540638	.	+	.	source_transcript=hg002_chrY_paternal_516.1;source_transcript_name=hg002_chrY_paternal_516.1;source_gene=hg002_chrY_paternal_516;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_516;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_516.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_516.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17A;alternative_source_transcripts=hg002_chrY_paternal_516.1;transcript_id=NA12877_ch_T0000547;gene_id=NA12877_ch_G0000214;Parent=NA12877_ch_T0000547;transcript_name=hg002_chrY_paternal_516.1;gene_name=TTTY17A;ID=exon:NA12877_ch_T0000547:1;Name=TTTY17A;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23624378	23661211	.	+	.	source_gene_common_name=TTTY4C;source_gene=hg002_chrY_paternal_519;alternative_source_transcripts=hg002_chrY_paternal_519.1,hg002_chrY_paternal_519.1;gene_id=NA12877_ch_G0000215;gene_biotype=lncRNA;gene_name=TTTY4C;gene_sources=liftoff;ID=NA12877_ch_G0000215;Name=TTTY4C
NA12877_chrY	CAT	transcript	23624378	23661211	1000	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1,hg002_chrY_paternal_519.1;transcript_id=NA12877_ch_T0000548;gene_id=NA12877_ch_G0000215;Parent=NA12877_ch_G0000215;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=NA12877_ch_T0000548;Name=TTTY4C
NA12877_chrY	CAT	exon	23624378	23624538	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1,hg002_chrY_paternal_519.1;transcript_id=NA12877_ch_T0000548;gene_id=NA12877_ch_G0000215;Parent=NA12877_ch_T0000548;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=exon:NA12877_ch_T0000548:0;Name=TTTY4C;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23624539	23651554	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1,hg002_chrY_paternal_519.1;transcript_id=NA12877_ch_T0000548;gene_id=NA12877_ch_G0000215;Parent=NA12877_ch_T0000548;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=intron:NA12877_ch_T0000548:0;Name=TTTY4C;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23651555	23651630	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1,hg002_chrY_paternal_519.1;transcript_id=NA12877_ch_T0000548;gene_id=NA12877_ch_G0000215;Parent=NA12877_ch_T0000548;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=exon:NA12877_ch_T0000548:1;Name=TTTY4C;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23651631	23653434	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1,hg002_chrY_paternal_519.1;transcript_id=NA12877_ch_T0000548;gene_id=NA12877_ch_G0000215;Parent=NA12877_ch_T0000548;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=intron:NA12877_ch_T0000548:1;Name=TTTY4C;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23653435	23653542	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1,hg002_chrY_paternal_519.1;transcript_id=NA12877_ch_T0000548;gene_id=NA12877_ch_G0000215;Parent=NA12877_ch_T0000548;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=exon:NA12877_ch_T0000548:2;Name=TTTY4C;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23653543	23660210	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1,hg002_chrY_paternal_519.1;transcript_id=NA12877_ch_T0000548;gene_id=NA12877_ch_G0000215;Parent=NA12877_ch_T0000548;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=intron:NA12877_ch_T0000548:2;Name=TTTY4C;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23660211	23661211	.	+	.	source_transcript=hg002_chrY_paternal_519.1;source_transcript_name=hg002_chrY_paternal_519.1;source_gene=hg002_chrY_paternal_519;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_519;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_519.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_519.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=hg002_chrY_paternal_519.1,hg002_chrY_paternal_519.1;transcript_id=NA12877_ch_T0000548;gene_id=NA12877_ch_G0000215;Parent=NA12877_ch_T0000548;transcript_name=hg002_chrY_paternal_519.1;gene_name=TTTY4C;ID=exon:NA12877_ch_T0000548:3;Name=TTTY4C;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23672190	23693393	.	+	.	source_gene_common_name=BPY2B;source_gene=hg002_chrY_paternal_533;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;gene_id=NA12877_ch_G0000216;gene_biotype=protein_coding;gene_name=BPY2B;gene_sources=liftoff;ID=NA12877_ch_G0000216;Name=BPY2B
NA12877_chrY	CAT	transcript	23672190	23693393	10000	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_G0000216;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=NA12877_ch_T0000549;Name=BPY2B
NA12877_chrY	CAT	exon	23672190	23672220	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:NA12877_ch_T0000549:0;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23672221	23672495	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:NA12877_ch_T0000549:0;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23672496	23672618	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:NA12877_ch_T0000549:1;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23672619	23675683	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:NA12877_ch_T0000549:1;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23675684	23675820	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:NA12877_ch_T0000549:2;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23675821	23680229	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:NA12877_ch_T0000549:2;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23680230	23680348	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:NA12877_ch_T0000549:3;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23680271	23680348	.	+	0	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=CDS:NA12877_ch_T0000549:0;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23680271	23680273	.	+	0	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=start_codon:NA12877_ch_T0000549;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23680349	23682407	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:NA12877_ch_T0000549:3;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23682408	23682525	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:NA12877_ch_T0000549:4;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23682408	23682525	.	+	0	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=CDS:NA12877_ch_T0000549:1;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23682526	23685379	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:NA12877_ch_T0000549:4;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23685380	23685485	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:NA12877_ch_T0000549:5;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23685380	23685485	.	+	2	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=CDS:NA12877_ch_T0000549:2;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23685486	23686177	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:NA12877_ch_T0000549:5;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23686178	23686302	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:NA12877_ch_T0000549:6;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23686178	23686196	.	+	1	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=CDS:NA12877_ch_T0000549:3;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23686194	23686196	.	+	0	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=stop_codon:NA12877_ch_T0000549;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23686303	23692852	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:NA12877_ch_T0000549:6;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23692853	23692977	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:NA12877_ch_T0000549:7;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23692978	23693071	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=intron:NA12877_ch_T0000549:7;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23693072	23693393	.	+	.	source_transcript=hg002_chrY_paternal_533.1;source_transcript_name=hg002_chrY_paternal_533.1;source_gene=hg002_chrY_paternal_533;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_533;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_533.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_533.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=hg002_chrY_paternal_520.1,hg002_chrY_paternal_520.1;transcript_id=NA12877_ch_T0000549;gene_id=NA12877_ch_G0000216;Parent=NA12877_ch_T0000549;transcript_name=hg002_chrY_paternal_533.1;gene_name=BPY2B;ID=exon:NA12877_ch_T0000549:8;Name=BPY2B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23794316	23797653	.	-	.	source_gene_common_name=LOC105377242;source_gene=hg002_chrY_paternal_528;gene_id=NA12877_ch_G0000217;gene_biotype=lncRNA;gene_name=LOC105377242;gene_sources=liftoff;ID=NA12877_ch_G0000217;Name=LOC105377242
NA12877_chrY	CAT	transcript	23794316	23797653	1000	-	.	source_transcript=hg002_chrY_paternal_528.1;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;transcript_id=NA12877_ch_T0000550;gene_id=NA12877_ch_G0000217;Parent=NA12877_ch_G0000217;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=NA12877_ch_T0000550;Name=LOC105377242
NA12877_chrY	CAT	exon	23794316	23794416	.	-	.	source_transcript=hg002_chrY_paternal_528.1;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;transcript_id=NA12877_ch_T0000550;gene_id=NA12877_ch_G0000217;Parent=NA12877_ch_T0000550;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=exon:NA12877_ch_T0000550:0;Name=LOC105377242;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23794417	23796747	.	-	.	source_transcript=hg002_chrY_paternal_528.1;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;transcript_id=NA12877_ch_T0000550;gene_id=NA12877_ch_G0000217;Parent=NA12877_ch_T0000550;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=intron:NA12877_ch_T0000550:0;Name=LOC105377242;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23796748	23796812	.	-	.	source_transcript=hg002_chrY_paternal_528.1;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;transcript_id=NA12877_ch_T0000550;gene_id=NA12877_ch_G0000217;Parent=NA12877_ch_T0000550;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=exon:NA12877_ch_T0000550:1;Name=LOC105377242;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23796813	23797474	.	-	.	source_transcript=hg002_chrY_paternal_528.1;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;transcript_id=NA12877_ch_T0000550;gene_id=NA12877_ch_G0000217;Parent=NA12877_ch_T0000550;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=intron:NA12877_ch_T0000550:1;Name=LOC105377242;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23797475	23797653	.	-	.	source_transcript=hg002_chrY_paternal_528.1;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;transcript_id=NA12877_ch_T0000550;gene_id=NA12877_ch_G0000217;Parent=NA12877_ch_T0000550;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=exon:NA12877_ch_T0000550:2;Name=LOC105377242;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23794316	23797653	1000	-	.	source_transcript=hg002_chrY_paternal_528.2;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;transcript_id=NA12877_ch_T0000551;gene_id=NA12877_ch_G0000217;Parent=NA12877_ch_G0000217;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=NA12877_ch_T0000551;Name=LOC105377242
NA12877_chrY	CAT	exon	23794316	23794416	.	-	.	source_transcript=hg002_chrY_paternal_528.2;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;transcript_id=NA12877_ch_T0000551;gene_id=NA12877_ch_G0000217;Parent=NA12877_ch_T0000551;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=exon:NA12877_ch_T0000551:0;Name=LOC105377242;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23794417	23796774	.	-	.	source_transcript=hg002_chrY_paternal_528.2;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;transcript_id=NA12877_ch_T0000551;gene_id=NA12877_ch_G0000217;Parent=NA12877_ch_T0000551;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=intron:NA12877_ch_T0000551:0;Name=LOC105377242;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23796775	23796812	.	-	.	source_transcript=hg002_chrY_paternal_528.2;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;transcript_id=NA12877_ch_T0000551;gene_id=NA12877_ch_G0000217;Parent=NA12877_ch_T0000551;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=exon:NA12877_ch_T0000551:1;Name=LOC105377242;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23796813	23797474	.	-	.	source_transcript=hg002_chrY_paternal_528.2;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;transcript_id=NA12877_ch_T0000551;gene_id=NA12877_ch_G0000217;Parent=NA12877_ch_T0000551;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=intron:NA12877_ch_T0000551:1;Name=LOC105377242;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23797475	23797653	.	-	.	source_transcript=hg002_chrY_paternal_528.2;source_transcript_name=hg002_chrY_paternal_528.1;source_gene=hg002_chrY_paternal_528;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_528;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_528.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_528.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377242;transcript_id=NA12877_ch_T0000551;gene_id=NA12877_ch_G0000217;Parent=NA12877_ch_T0000551;transcript_name=hg002_chrY_paternal_528.1;gene_name=LOC105377242;ID=exon:NA12877_ch_T0000551:2;Name=LOC105377242;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23817276	23886930	.	-	.	source_gene_common_name=DAZ3;source_gene=hg002_chrY_paternal_526;alternative_source_transcripts=hg002_chrY_paternal_526.1;gene_id=NA12877_ch_G0000218;gene_biotype=protein_coding;gene_name=DAZ3;gene_sources=augTM,transMap;ID=NA12877_ch_G0000218;Name=DAZ3
NA12877_chrY	CAT	transcript	23817276	23886930	9950	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_G0000218;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=NA12877_ch_T0000552;Name=DAZ3
NA12877_chrY	CAT	exon	23817276	23819132	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:0;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23819133	23823095	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:0;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23823096	23823194	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:1;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23823131	23823194	.	-	1	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:0;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23823131	23823133	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=stop_codon:NA12877_ch_T0000552;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23823195	23827767	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:1;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23827768	23827802	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:2;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23827768	23827802	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:1;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23827803	23828546	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:2;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23828547	23828618	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:3;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23828547	23828618	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:2;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23828619	23840717	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:3;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23840718	23840789	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:4;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23840718	23840789	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:3;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23840790	23843094	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:4;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23843095	23843166	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:5;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23843095	23843166	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:4;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23843167	23845490	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:5;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23845491	23845562	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:6;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23845491	23845562	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:5;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23845563	23847873	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:6;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23847874	23847945	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:7;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23847874	23847945	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:6;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23847946	23850269	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:7;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23850270	23850341	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:8;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23850270	23850341	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:7;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23850342	23852660	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:8;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23852661	23852732	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:9;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23852661	23852732	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:8;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23852733	23855105	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:9;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23855106	23855177	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:10;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23855106	23855177	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:9;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23855178	23867418	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:10;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23867419	23867558	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:11;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23867419	23867558	.	-	2	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:10;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23867559	23867647	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:11;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23867648	23867711	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:12;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23867648	23867711	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:11;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23867712	23868147	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:12;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23868148	23868199	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:13;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23868148	23868199	.	-	1	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:12;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23868200	23868759	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:13;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23868760	23868851	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:14;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23868760	23868851	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:13;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23868852	23869125	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:14;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23869126	23869272	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:15;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23869126	23869272	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:14;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23869273	23886719	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000552:15;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23886720	23886930	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000552:16;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23886720	23886722	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000552:15;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23886720	23886722	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=transMap;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=277.9548888888889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=hg002_chrY_paternal_526.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000552;gene_id=NA12877_ch_G0000218;Parent=NA12877_ch_T0000552;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=start_codon:NA12877_ch_T0000552;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23907379	23979277	.	+	.	source_gene_common_name=DAZ2;source_gene=hg002_chrY_paternal_601;gene_id=NA12877_ch_G0000219;gene_biotype=protein_coding;gene_name=DAZ2;gene_sources=liftoff;ID=NA12877_ch_G0000219;Name=DAZ2
NA12877_chrY	CAT	transcript	23907379	23979277	10000	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_G0000219;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=NA12877_ch_T0000553;Name=DAZ2
NA12877_chrY	CAT	exon	23907379	23907665	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:NA12877_ch_T0000553;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23907666	23914265	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23914266	23914412	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23914266	23914412	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23914413	23914686	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23914687	23914778	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23914687	23914778	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23914779	23915338	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915339	23915390	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915339	23915390	.	+	1	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915391	23915826	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915827	23915890	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915827	23915890	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915891	23915979	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915980	23916119	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915980	23916119	.	+	2	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23916120	23917519	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23917520	23917591	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23917520	23917591	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23917592	23919963	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23919964	23920035	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23919964	23920035	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23920036	23922354	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23922355	23922426	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23922355	23922426	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23922427	23924750	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23924751	23924822	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23924751	23924822	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23924823	23939065	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23939066	23939137	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23939066	23939137	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23939138	23943838	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23943839	23943910	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23943839	23943910	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23943911	23953627	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23953628	23953699	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23953628	23953699	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23953700	23956011	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23956012	23956083	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23956012	23956083	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23956084	23958395	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23958396	23958467	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23958396	23958467	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23958468	23960780	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23960781	23960852	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23960781	23960852	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23960853	23965548	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23965549	23965620	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23965549	23965620	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23965621	23967933	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23967934	23968005	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23967934	23968005	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968006	23968749	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23968750	23968784	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23968750	23968784	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968785	23973358	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23973359	23973457	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23973359	23973422	.	+	1	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000553:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23973420	23973422	.	+	0	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:NA12877_ch_T0000553;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23973458	23977420	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000553:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23977421	23979277	.	+	.	source_transcript=hg002_chrY_paternal_601.3;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000553;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000553;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000553:20;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23907379	23979277	10000	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_G0000219;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=NA12877_ch_T0000554;Name=DAZ2
NA12877_chrY	CAT	exon	23907379	23907665	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:NA12877_ch_T0000554;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23907666	23914265	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23914266	23914412	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23914266	23914412	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23914413	23914686	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23914687	23914778	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23914687	23914778	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23914779	23915338	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915339	23915390	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915339	23915390	.	+	1	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915391	23915826	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915827	23915890	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915827	23915890	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915891	23915979	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915980	23916119	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915980	23916119	.	+	2	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23916120	23917519	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23917520	23917591	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23917520	23917591	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23917592	23919963	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23919964	23920035	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23919964	23920035	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23920036	23939065	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23939066	23939137	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23939066	23939137	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23939138	23953627	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23953628	23953699	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23953628	23953699	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23953700	23956011	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23956012	23956083	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23956012	23956083	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23956084	23958395	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23958396	23958467	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23958396	23958467	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23958468	23967933	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23967934	23968005	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23967934	23968005	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968006	23968749	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23968750	23968784	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23968750	23968784	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968785	23973358	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23973359	23973457	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23973359	23973422	.	+	1	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000554:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23973420	23973422	.	+	0	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:NA12877_ch_T0000554;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23973458	23977420	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000554:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23977421	23979277	.	+	.	source_transcript=hg002_chrY_paternal_601.2;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000554;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000554;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000554:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23907379	23979277	10000	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_G0000219;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=NA12877_ch_T0000555;Name=DAZ2
NA12877_chrY	CAT	exon	23907379	23907665	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:NA12877_ch_T0000555;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23907666	23914265	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23914266	23914412	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23914266	23914412	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23914413	23914686	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23914687	23914778	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23914687	23914778	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23914779	23915338	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915339	23915390	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915339	23915390	.	+	1	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915391	23915826	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915827	23915890	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915827	23915890	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915891	23915979	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915980	23916119	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915980	23916119	.	+	2	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23916120	23917519	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23917520	23917591	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23917520	23917591	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23917592	23919963	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23919964	23920035	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23919964	23920035	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23920036	23922354	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23922355	23922426	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23922355	23922426	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23922427	23924750	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23924751	23924822	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23924751	23924822	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23924823	23939065	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23939066	23939137	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23939066	23939137	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23939138	23953627	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23953628	23953699	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23953628	23953699	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23953700	23956011	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23956012	23956083	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23956012	23956083	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23956084	23958395	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23958396	23958467	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23958396	23958467	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23958468	23960780	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23960781	23960852	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23960781	23960852	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23960853	23965548	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23965549	23965620	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23965549	23965620	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23965621	23967933	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23967934	23968005	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23967934	23968005	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968006	23968749	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23968750	23968784	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23968750	23968784	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968785	23973358	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23973359	23973457	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23973359	23973422	.	+	1	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000555:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23973420	23973422	.	+	0	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:NA12877_ch_T0000555;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23973458	23977420	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000555:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23977421	23979277	.	+	.	source_transcript=hg002_chrY_paternal_601.1;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000555;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000555;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000555:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23907455	23979277	10000	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_G0000219;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=NA12877_ch_T0000556;Name=DAZ2
NA12877_chrY	CAT	exon	23907455	23907665	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:NA12877_ch_T0000556;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23907666	23914265	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23914266	23914412	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23914266	23914412	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23914413	23914686	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23914687	23914778	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23914687	23914778	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23914779	23915338	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915339	23915390	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915339	23915390	.	+	1	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915391	23915826	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915827	23915890	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915827	23915890	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915891	23915979	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915980	23916119	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915980	23916119	.	+	2	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23916120	23917519	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23917520	23917591	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23917520	23917591	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23917592	23919963	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23919964	23920035	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23919964	23920035	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23920036	23922354	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23922355	23922426	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23922355	23922426	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23922427	23924750	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23924751	23924822	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23924751	23924822	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23924823	23939065	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23939066	23939137	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23939066	23939137	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23939138	23941461	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23941462	23941533	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23941462	23941533	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23941534	23943838	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23943839	23943910	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23943839	23943910	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23943911	23953627	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23953628	23953699	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23953628	23953699	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23953700	23956011	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23956012	23956083	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23956012	23956083	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23956084	23958395	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23958396	23958467	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23958396	23958467	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23958468	23960780	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23960781	23960852	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23960781	23960852	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23960853	23965548	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23965549	23965620	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23965549	23965620	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23965621	23967933	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23967934	23968005	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23967934	23968005	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968006	23968749	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23968750	23968784	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23968750	23968784	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968785	23973358	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23973359	23973457	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:20;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23973359	23973422	.	+	1	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000556:20;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23973420	23973422	.	+	0	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:NA12877_ch_T0000556;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23973458	23977420	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000556:20;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23977421	23979277	.	+	.	source_transcript=hg002_chrY_paternal_601.7;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000556;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000556;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000556:21;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23907455	23979277	10000	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_G0000219;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=NA12877_ch_T0000557;Name=DAZ2
NA12877_chrY	CAT	exon	23907455	23907665	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:NA12877_ch_T0000557;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23907666	23914265	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23914266	23914412	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23914266	23914412	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23914413	23914686	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23914687	23914778	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23914687	23914778	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23914779	23915338	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915339	23915390	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915339	23915390	.	+	1	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915391	23915826	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915827	23915890	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915827	23915890	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915891	23915979	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915980	23916119	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915980	23916119	.	+	2	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23916120	23917519	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23917520	23917591	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23917520	23917591	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23917592	23919963	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23919964	23920035	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23919964	23920035	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23920036	23922354	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23922355	23922426	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23922355	23922426	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23922427	23924750	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23924751	23924822	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23924751	23924822	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23924823	23939065	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23939066	23939137	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23939066	23939137	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23939138	23941461	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23941462	23941533	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23941462	23941533	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23941534	23943838	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23943839	23943910	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23943839	23943910	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23943911	23953627	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23953628	23953699	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23953628	23953699	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23953700	23956011	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23956012	23956083	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23956012	23956083	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23956084	23958395	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23958396	23958467	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23958396	23958467	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23958468	23960780	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23960781	23960852	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23960781	23960852	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23960853	23967933	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23967934	23968005	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23967934	23968005	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968006	23968749	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23968750	23968784	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23968750	23968784	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968785	23973358	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23973359	23973457	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23973359	23973422	.	+	1	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000557:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23973420	23973422	.	+	0	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:NA12877_ch_T0000557;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23973458	23977420	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000557:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23977421	23979277	.	+	.	source_transcript=hg002_chrY_paternal_601.5;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000557;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000557;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000557:20;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23907455	23979277	10000	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_G0000219;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=NA12877_ch_T0000558;Name=DAZ2
NA12877_chrY	CAT	exon	23907455	23907665	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:NA12877_ch_T0000558;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23907666	23914265	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23914266	23914412	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23914266	23914412	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23914413	23914686	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23914687	23914778	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23914687	23914778	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23914779	23915338	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915339	23915390	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915339	23915390	.	+	1	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915391	23915826	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915827	23915890	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915827	23915890	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915891	23915979	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915980	23916119	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915980	23916119	.	+	2	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23916120	23917519	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23917520	23917591	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23917520	23917591	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23917592	23919963	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23919964	23920035	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23919964	23920035	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23920036	23922354	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23922355	23922426	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23922355	23922426	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23922427	23924750	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23924751	23924822	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23924751	23924822	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23924823	23939065	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23939066	23939137	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23939066	23939137	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23939138	23943838	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23943839	23943910	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23943839	23943910	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23943911	23953627	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23953628	23953699	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23953628	23953699	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23953700	23956011	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23956012	23956083	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23956012	23956083	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23956084	23958395	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23958396	23958467	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23958396	23958467	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23958468	23960780	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23960781	23960852	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23960781	23960852	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23960853	23965548	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23965549	23965620	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23965549	23965620	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23965621	23967933	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23967934	23968005	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23967934	23968005	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968006	23968749	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23968750	23968784	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23968750	23968784	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968785	23973358	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23973359	23973457	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23973359	23973422	.	+	1	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000558:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23973420	23973422	.	+	0	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:NA12877_ch_T0000558;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23973458	23977420	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000558:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23977421	23979277	.	+	.	source_transcript=hg002_chrY_paternal_601.4;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000558;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000558;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000558:20;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23907455	23979277	10000	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_G0000219;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=NA12877_ch_T0000559;Name=DAZ2
NA12877_chrY	CAT	exon	23907455	23907665	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	23907663	23907665	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=start_codon:NA12877_ch_T0000559;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23907666	23914686	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:0;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23914687	23914778	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23914687	23914778	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23914779	23915338	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:1;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915339	23915390	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915339	23915390	.	+	1	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915391	23915826	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:2;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915827	23915890	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915827	23915890	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23915891	23915979	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:3;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23915980	23916119	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23915980	23916119	.	+	2	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23916120	23917519	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:4;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23917520	23917591	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23917520	23917591	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23917592	23919963	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:5;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23919964	23920035	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23919964	23920035	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23920036	23922354	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:6;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23922355	23922426	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23922355	23922426	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23922427	23924750	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:7;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23924751	23924822	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23924751	23924822	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23924823	23939065	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:8;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23939066	23939137	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23939066	23939137	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23939138	23941461	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:9;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23941462	23941533	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23941462	23941533	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23941534	23943838	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:10;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23943839	23943910	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23943839	23943910	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23943911	23953627	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:11;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23953628	23953699	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23953628	23953699	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23953700	23956011	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:12;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23956012	23956083	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23956012	23956083	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23956084	23958395	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:13;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23958396	23958467	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23958396	23958467	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23958468	23960780	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:14;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23960781	23960852	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23960781	23960852	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23960853	23965548	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:15;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23965549	23965620	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23965549	23965620	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23965621	23967933	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:16;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23967934	23968005	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23967934	23968005	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968006	23968749	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:17;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23968750	23968784	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23968750	23968784	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23968785	23973358	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:18;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23973359	23973457	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	23973359	23973422	.	+	1	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=CDS:NA12877_ch_T0000559:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	23973420	23973422	.	+	0	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=stop_codon:NA12877_ch_T0000559;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23973458	23977420	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=intron:NA12877_ch_T0000559:19;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23977421	23979277	.	+	.	source_transcript=hg002_chrY_paternal_601.6;source_transcript_name=hg002_chrY_paternal_601.7;source_gene=hg002_chrY_paternal_601;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_601;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_601.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_601.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=NA12877_ch_T0000559;gene_id=NA12877_ch_G0000219;Parent=NA12877_ch_T0000559;transcript_name=hg002_chrY_paternal_601.7;gene_name=DAZ2;ID=exon:NA12877_ch_T0000559:20;Name=DAZ2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	23998898	24002235	.	+	.	source_gene_common_name=LOC105377239;source_gene=hg002_chrY_paternal_602;gene_id=NA12877_ch_G0000220;gene_biotype=lncRNA;gene_name=LOC105377239;gene_sources=liftoff;ID=NA12877_ch_G0000220;Name=LOC105377239
NA12877_chrY	CAT	transcript	23998898	24002235	1000	+	.	source_transcript=hg002_chrY_paternal_602.2;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;transcript_id=NA12877_ch_T0000560;gene_id=NA12877_ch_G0000220;Parent=NA12877_ch_G0000220;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=NA12877_ch_T0000560;Name=LOC105377239
NA12877_chrY	CAT	exon	23998898	23999076	.	+	.	source_transcript=hg002_chrY_paternal_602.2;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;transcript_id=NA12877_ch_T0000560;gene_id=NA12877_ch_G0000220;Parent=NA12877_ch_T0000560;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=exon:NA12877_ch_T0000560:0;Name=LOC105377239;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23999077	23999738	.	+	.	source_transcript=hg002_chrY_paternal_602.2;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;transcript_id=NA12877_ch_T0000560;gene_id=NA12877_ch_G0000220;Parent=NA12877_ch_T0000560;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=intron:NA12877_ch_T0000560:0;Name=LOC105377239;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23999739	23999776	.	+	.	source_transcript=hg002_chrY_paternal_602.2;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;transcript_id=NA12877_ch_T0000560;gene_id=NA12877_ch_G0000220;Parent=NA12877_ch_T0000560;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=exon:NA12877_ch_T0000560:1;Name=LOC105377239;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23999777	24002134	.	+	.	source_transcript=hg002_chrY_paternal_602.2;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;transcript_id=NA12877_ch_T0000560;gene_id=NA12877_ch_G0000220;Parent=NA12877_ch_T0000560;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=intron:NA12877_ch_T0000560:1;Name=LOC105377239;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24002135	24002235	.	+	.	source_transcript=hg002_chrY_paternal_602.2;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;transcript_id=NA12877_ch_T0000560;gene_id=NA12877_ch_G0000220;Parent=NA12877_ch_T0000560;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=exon:NA12877_ch_T0000560:2;Name=LOC105377239;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	23998898	24002235	1000	+	.	source_transcript=hg002_chrY_paternal_602.1;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;transcript_id=NA12877_ch_T0000561;gene_id=NA12877_ch_G0000220;Parent=NA12877_ch_G0000220;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=NA12877_ch_T0000561;Name=LOC105377239
NA12877_chrY	CAT	exon	23998898	23999076	.	+	.	source_transcript=hg002_chrY_paternal_602.1;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;transcript_id=NA12877_ch_T0000561;gene_id=NA12877_ch_G0000220;Parent=NA12877_ch_T0000561;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=exon:NA12877_ch_T0000561:0;Name=LOC105377239;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23999077	23999738	.	+	.	source_transcript=hg002_chrY_paternal_602.1;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;transcript_id=NA12877_ch_T0000561;gene_id=NA12877_ch_G0000220;Parent=NA12877_ch_T0000561;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=intron:NA12877_ch_T0000561:0;Name=LOC105377239;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	23999739	23999803	.	+	.	source_transcript=hg002_chrY_paternal_602.1;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;transcript_id=NA12877_ch_T0000561;gene_id=NA12877_ch_G0000220;Parent=NA12877_ch_T0000561;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=exon:NA12877_ch_T0000561:1;Name=LOC105377239;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	23999804	24002134	.	+	.	source_transcript=hg002_chrY_paternal_602.1;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;transcript_id=NA12877_ch_T0000561;gene_id=NA12877_ch_G0000220;Parent=NA12877_ch_T0000561;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=intron:NA12877_ch_T0000561:1;Name=LOC105377239;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24002135	24002235	.	+	.	source_transcript=hg002_chrY_paternal_602.1;source_transcript_name=hg002_chrY_paternal_602.1;source_gene=hg002_chrY_paternal_602;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_602;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_602.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_602.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377239;transcript_id=NA12877_ch_T0000561;gene_id=NA12877_ch_G0000220;Parent=NA12877_ch_T0000561;transcript_name=hg002_chrY_paternal_602.1;gene_name=LOC105377239;ID=exon:NA12877_ch_T0000561:2;Name=LOC105377239;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	24111020	24111157	.	-	.	source_gene_common_name=LOC124900507;source_gene=hg002_chrY_paternal_669;alternative_source_transcripts=hg002_chrY_paternal_597.1;gene_id=NA12877_ch_G0000221;gene_biotype=snoRNA;gene_name=LOC124900507;gene_sources=liftoff;ID=NA12877_ch_G0000221;Name=LOC124900507
NA12877_chrY	CAT	transcript	24111020	24111157	1000	-	.	source_transcript=hg002_chrY_paternal_669.1;source_transcript_name=hg002_chrY_paternal_669.1;source_gene=hg002_chrY_paternal_669;source_gene_biotype=snoRNA;original_gene_id=hg002_chrY_paternal_669;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=hg002_chrY_paternal_669.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_669.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124900507;alternative_source_transcripts=hg002_chrY_paternal_597.1;transcript_id=NA12877_ch_T0000562;gene_id=NA12877_ch_G0000221;Parent=NA12877_ch_G0000221;transcript_name=hg002_chrY_paternal_669.1;gene_name=LOC124900507;ID=NA12877_ch_T0000562;Name=LOC124900507
NA12877_chrY	CAT	exon	24111020	24111157	.	-	.	source_transcript=hg002_chrY_paternal_669.1;source_transcript_name=hg002_chrY_paternal_669.1;source_gene=hg002_chrY_paternal_669;source_gene_biotype=snoRNA;original_gene_id=hg002_chrY_paternal_669;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=hg002_chrY_paternal_669.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_669.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124900507;alternative_source_transcripts=hg002_chrY_paternal_597.1;transcript_id=NA12877_ch_T0000562;gene_id=NA12877_ch_G0000221;Parent=NA12877_ch_T0000562;transcript_name=hg002_chrY_paternal_669.1;gene_name=LOC124900507;ID=exon:NA12877_ch_T0000562:0;Name=LOC124900507;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	24123161	24164662	.	+	.	source_gene_common_name=REREP2Y;source_gene=hg002_chrY_paternal_668;alternative_source_transcripts=hg002_chrY_paternal_596.1;gene_id=NA12877_ch_G0000222;gene_biotype=transcribed_pseudogene;gene_name=REREP2Y;gene_sources=liftoff;ID=NA12877_ch_G0000222;Name=REREP2Y
NA12877_chrY	CAT	transcript	24123161	24164662	1000	+	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;alternative_source_transcripts=hg002_chrY_paternal_596.1;transcript_id=NA12877_ch_T0000563;gene_id=NA12877_ch_G0000222;Parent=NA12877_ch_G0000222;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=NA12877_ch_T0000563;Name=REREP2Y
NA12877_chrY	CAT	exon	24123161	24123563	.	+	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;alternative_source_transcripts=hg002_chrY_paternal_596.1;transcript_id=NA12877_ch_T0000563;gene_id=NA12877_ch_G0000222;Parent=NA12877_ch_T0000563;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=exon:NA12877_ch_T0000563:0;Name=REREP2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24123564	24150381	.	+	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;alternative_source_transcripts=hg002_chrY_paternal_596.1;transcript_id=NA12877_ch_T0000563;gene_id=NA12877_ch_G0000222;Parent=NA12877_ch_T0000563;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=intron:NA12877_ch_T0000563:0;Name=REREP2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24150382	24150454	.	+	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;alternative_source_transcripts=hg002_chrY_paternal_596.1;transcript_id=NA12877_ch_T0000563;gene_id=NA12877_ch_G0000222;Parent=NA12877_ch_T0000563;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=exon:NA12877_ch_T0000563:1;Name=REREP2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24150455	24160072	.	+	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;alternative_source_transcripts=hg002_chrY_paternal_596.1;transcript_id=NA12877_ch_T0000563;gene_id=NA12877_ch_G0000222;Parent=NA12877_ch_T0000563;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=intron:NA12877_ch_T0000563:1;Name=REREP2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24160073	24164662	.	+	.	source_transcript=hg002_chrY_paternal_668.1;source_transcript_name=hg002_chrY_paternal_668.1;source_gene=hg002_chrY_paternal_668;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_668;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_668.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_668.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;alternative_source_transcripts=hg002_chrY_paternal_596.1;transcript_id=NA12877_ch_T0000563;gene_id=NA12877_ch_G0000222;Parent=NA12877_ch_T0000563;transcript_name=hg002_chrY_paternal_668.1;gene_name=REREP2Y;ID=exon:NA12877_ch_T0000563:2;Name=REREP2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	24325569	24328693	.	+	.	source_gene_common_name=LOC107987349;source_gene=hg002_chrY_paternal_593;alternative_source_transcripts=hg002_chrY_paternal_593.1;gene_id=NA12877_ch_G0000223;gene_biotype=lncRNA;gene_name=LOC107987349;gene_sources=liftoff;ID=NA12877_ch_G0000223;Name=LOC107987349
NA12877_chrY	CAT	transcript	24325569	24328693	1000	+	.	source_transcript=hg002_chrY_paternal_593.1;source_transcript_name=hg002_chrY_paternal_593.1;source_gene=hg002_chrY_paternal_593;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_593;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_593.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_593.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987349;alternative_source_transcripts=hg002_chrY_paternal_593.1;transcript_id=NA12877_ch_T0000564;gene_id=NA12877_ch_G0000223;Parent=NA12877_ch_G0000223;transcript_name=hg002_chrY_paternal_593.1;gene_name=LOC107987349;ID=NA12877_ch_T0000564;Name=LOC107987349
NA12877_chrY	CAT	exon	24325569	24325651	.	+	.	source_transcript=hg002_chrY_paternal_593.1;source_transcript_name=hg002_chrY_paternal_593.1;source_gene=hg002_chrY_paternal_593;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_593;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_593.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_593.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987349;alternative_source_transcripts=hg002_chrY_paternal_593.1;transcript_id=NA12877_ch_T0000564;gene_id=NA12877_ch_G0000223;Parent=NA12877_ch_T0000564;transcript_name=hg002_chrY_paternal_593.1;gene_name=LOC107987349;ID=exon:NA12877_ch_T0000564:0;Name=LOC107987349;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24325652	24325768	.	+	.	source_transcript=hg002_chrY_paternal_593.1;source_transcript_name=hg002_chrY_paternal_593.1;source_gene=hg002_chrY_paternal_593;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_593;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_593.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_593.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987349;alternative_source_transcripts=hg002_chrY_paternal_593.1;transcript_id=NA12877_ch_T0000564;gene_id=NA12877_ch_G0000223;Parent=NA12877_ch_T0000564;transcript_name=hg002_chrY_paternal_593.1;gene_name=LOC107987349;ID=intron:NA12877_ch_T0000564:0;Name=LOC107987349;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24325769	24325829	.	+	.	source_transcript=hg002_chrY_paternal_593.1;source_transcript_name=hg002_chrY_paternal_593.1;source_gene=hg002_chrY_paternal_593;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_593;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_593.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_593.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987349;alternative_source_transcripts=hg002_chrY_paternal_593.1;transcript_id=NA12877_ch_T0000564;gene_id=NA12877_ch_G0000223;Parent=NA12877_ch_T0000564;transcript_name=hg002_chrY_paternal_593.1;gene_name=LOC107987349;ID=exon:NA12877_ch_T0000564:1;Name=LOC107987349;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24325830	24327364	.	+	.	source_transcript=hg002_chrY_paternal_593.1;source_transcript_name=hg002_chrY_paternal_593.1;source_gene=hg002_chrY_paternal_593;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_593;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_593.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_593.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987349;alternative_source_transcripts=hg002_chrY_paternal_593.1;transcript_id=NA12877_ch_T0000564;gene_id=NA12877_ch_G0000223;Parent=NA12877_ch_T0000564;transcript_name=hg002_chrY_paternal_593.1;gene_name=LOC107987349;ID=intron:NA12877_ch_T0000564:1;Name=LOC107987349;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24327365	24328693	.	+	.	source_transcript=hg002_chrY_paternal_593.1;source_transcript_name=hg002_chrY_paternal_593.1;source_gene=hg002_chrY_paternal_593;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_593;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_593.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_593.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987349;alternative_source_transcripts=hg002_chrY_paternal_593.1;transcript_id=NA12877_ch_T0000564;gene_id=NA12877_ch_G0000223;Parent=NA12877_ch_T0000564;transcript_name=hg002_chrY_paternal_593.1;gene_name=LOC107987349;ID=exon:NA12877_ch_T0000564:2;Name=LOC107987349;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	24624657	24629552	.	-	.	source_gene_common_name=TTTY3B;source_gene=hg002_chrY_paternal_645;alternative_source_transcripts=hg002_chrY_paternal_572.1;gene_id=NA12877_ch_G0000224;gene_biotype=lncRNA;gene_name=TTTY3B;gene_sources=liftoff;ID=NA12877_ch_G0000224;Name=TTTY3B
NA12877_chrY	CAT	transcript	24624657	24629552	1000	-	.	source_transcript=hg002_chrY_paternal_645.1;source_transcript_name=hg002_chrY_paternal_645.1;source_gene=hg002_chrY_paternal_645;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_645;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_645.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_645.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=hg002_chrY_paternal_572.1;transcript_id=NA12877_ch_T0000565;gene_id=NA12877_ch_G0000224;Parent=NA12877_ch_G0000224;transcript_name=hg002_chrY_paternal_645.1;gene_name=TTTY3B;ID=NA12877_ch_T0000565;Name=TTTY3B
NA12877_chrY	CAT	exon	24624657	24624761	.	-	.	source_transcript=hg002_chrY_paternal_645.1;source_transcript_name=hg002_chrY_paternal_645.1;source_gene=hg002_chrY_paternal_645;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_645;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_645.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=hg002_chrY_paternal_572.1;transcript_id=NA12877_ch_T0000565;gene_id=NA12877_ch_G0000224;Parent=NA12877_ch_T0000565;transcript_name=hg002_chrY_paternal_645.1;gene_name=TTTY3B;ID=exon:NA12877_ch_T0000565:0;Name=TTTY3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24624762	24627115	.	-	.	source_transcript=hg002_chrY_paternal_645.1;source_transcript_name=hg002_chrY_paternal_645.1;source_gene=hg002_chrY_paternal_645;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_645;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_645.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=hg002_chrY_paternal_572.1;transcript_id=NA12877_ch_T0000565;gene_id=NA12877_ch_G0000224;Parent=NA12877_ch_T0000565;transcript_name=hg002_chrY_paternal_645.1;gene_name=TTTY3B;ID=intron:NA12877_ch_T0000565:0;Name=TTTY3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24627116	24627250	.	-	.	source_transcript=hg002_chrY_paternal_645.1;source_transcript_name=hg002_chrY_paternal_645.1;source_gene=hg002_chrY_paternal_645;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_645;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_645.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=hg002_chrY_paternal_572.1;transcript_id=NA12877_ch_T0000565;gene_id=NA12877_ch_G0000224;Parent=NA12877_ch_T0000565;transcript_name=hg002_chrY_paternal_645.1;gene_name=TTTY3B;ID=exon:NA12877_ch_T0000565:1;Name=TTTY3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24627251	24629448	.	-	.	source_transcript=hg002_chrY_paternal_645.1;source_transcript_name=hg002_chrY_paternal_645.1;source_gene=hg002_chrY_paternal_645;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_645;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_645.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=hg002_chrY_paternal_572.1;transcript_id=NA12877_ch_T0000565;gene_id=NA12877_ch_G0000224;Parent=NA12877_ch_T0000565;transcript_name=hg002_chrY_paternal_645.1;gene_name=TTTY3B;ID=intron:NA12877_ch_T0000565:1;Name=TTTY3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24629449	24629552	.	-	.	source_transcript=hg002_chrY_paternal_645.1;source_transcript_name=hg002_chrY_paternal_645.1;source_gene=hg002_chrY_paternal_645;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_645;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_645.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=hg002_chrY_paternal_572.1;transcript_id=NA12877_ch_T0000565;gene_id=NA12877_ch_G0000224;Parent=NA12877_ch_T0000565;transcript_name=hg002_chrY_paternal_645.1;gene_name=TTTY3B;ID=exon:NA12877_ch_T0000565:2;Name=TTTY3B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	24732550	24735936	.	-	.	source_gene_common_name=CDY1B;source_gene=hg002_chrY_paternal_565;alternative_source_transcripts=hg002_chrY_paternal_565.3;gene_id=NA12877_ch_G0000225;gene_biotype=protein_coding;gene_name=CDY1B;gene_sources=liftoff;ID=NA12877_ch_G0000225;Name=CDY1B
NA12877_chrY	CAT	transcript	24732550	24735944	1000	-	.	source_transcript=hg002_chrY_paternal_565.3;source_transcript_name=hg002_chrY_paternal_565.1;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_565.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.3;transcript_id=NA12877_ch_T0000566;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_G0000225;transcript_name=hg002_chrY_paternal_565.1;gene_name=CDY1B;ID=NA12877_ch_T0000566;Name=CDY1B
NA12877_chrY	CAT	exon	24732550	24732631	.	-	.	source_transcript=hg002_chrY_paternal_565.3;source_transcript_name=hg002_chrY_paternal_565.1;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_565.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.3;transcript_id=NA12877_ch_T0000566;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000566;transcript_name=hg002_chrY_paternal_565.1;gene_name=CDY1B;ID=exon:NA12877_ch_T0000566:0;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24732632	24733406	.	-	.	source_transcript=hg002_chrY_paternal_565.3;source_transcript_name=hg002_chrY_paternal_565.1;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_565.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.3;transcript_id=NA12877_ch_T0000566;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000566;transcript_name=hg002_chrY_paternal_565.1;gene_name=CDY1B;ID=intron:NA12877_ch_T0000566:0;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24733407	24733606	.	-	.	source_transcript=hg002_chrY_paternal_565.3;source_transcript_name=hg002_chrY_paternal_565.1;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_565.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.3;transcript_id=NA12877_ch_T0000566;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000566;transcript_name=hg002_chrY_paternal_565.1;gene_name=CDY1B;ID=exon:NA12877_ch_T0000566:1;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24733607	24734026	.	-	.	source_transcript=hg002_chrY_paternal_565.3;source_transcript_name=hg002_chrY_paternal_565.1;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_565.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.3;transcript_id=NA12877_ch_T0000566;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000566;transcript_name=hg002_chrY_paternal_565.1;gene_name=CDY1B;ID=intron:NA12877_ch_T0000566:1;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24734027	24735944	.	-	.	source_transcript=hg002_chrY_paternal_565.3;source_transcript_name=hg002_chrY_paternal_565.1;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_565.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.3;transcript_id=NA12877_ch_T0000566;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000566;transcript_name=hg002_chrY_paternal_565.1;gene_name=CDY1B;ID=exon:NA12877_ch_T0000566:2;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	24733159	24735944	100	-	.	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=NA12877_ch_T0000567;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_G0000225;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=NA12877_ch_T0000567;Name=CDY1B
NA12877_chrY	CAT	exon	24733159	24733606	.	-	.	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=NA12877_ch_T0000567;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000567;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=exon:NA12877_ch_T0000567:0;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	24733534	24733606	.	-	1	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=NA12877_ch_T0000567;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000567;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=CDS:NA12877_ch_T0000567:0;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	24733534	24733536	.	-	0	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=NA12877_ch_T0000567;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000567;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=stop_codon:NA12877_ch_T0000567;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24733607	24734026	.	-	.	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=NA12877_ch_T0000567;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000567;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=intron:NA12877_ch_T0000567:0;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24734027	24735944	.	-	.	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=NA12877_ch_T0000567;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000567;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=exon:NA12877_ch_T0000567:1;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	24734027	24735618	.	-	0	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=NA12877_ch_T0000567;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000567;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=CDS:NA12877_ch_T0000567:1;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	24735616	24735618	.	-	0	source_transcript=hg002_chrY_paternal_565.2;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.2;transcript_id=NA12877_ch_T0000567;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000567;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=start_codon:NA12877_ch_T0000567;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	24733159	24735936	100	-	.	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=NA12877_ch_T0000568;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_G0000225;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=NA12877_ch_T0000568;Name=CDY1B
NA12877_chrY	CAT	exon	24733159	24733606	.	-	.	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=NA12877_ch_T0000568;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000568;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=exon:NA12877_ch_T0000568:0;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	24733586	24733606	.	-	0	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=NA12877_ch_T0000568;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000568;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=CDS:NA12877_ch_T0000568:0;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	24733586	24733588	.	-	0	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=NA12877_ch_T0000568;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000568;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=stop_codon:NA12877_ch_T0000568;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24733607	24734226	.	-	.	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=NA12877_ch_T0000568;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000568;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=intron:NA12877_ch_T0000568:0;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24734227	24735936	.	-	.	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=NA12877_ch_T0000568;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000568;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=exon:NA12877_ch_T0000568:1;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	24734227	24735618	.	-	0	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=NA12877_ch_T0000568;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000568;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=CDS:NA12877_ch_T0000568:1;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	24735616	24735618	.	-	0	source_transcript=hg002_chrY_paternal_565.4;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.4;transcript_id=NA12877_ch_T0000568;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000568;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=start_codon:NA12877_ch_T0000568;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	24733723	24735949	100	-	.	source_transcript=hg002_chrY_paternal_565.1;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.1;transcript_id=NA12877_ch_T0000569;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_G0000225;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=NA12877_ch_T0000569;Name=CDY1B
NA12877_chrY	CAT	exon	24733723	24735949	.	-	.	source_transcript=hg002_chrY_paternal_565.1;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.1;transcript_id=NA12877_ch_T0000569;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000569;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=exon:NA12877_ch_T0000569:0;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	24733996	24735618	.	-	0	source_transcript=hg002_chrY_paternal_565.1;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.1;transcript_id=NA12877_ch_T0000569;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000569;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=CDS:NA12877_ch_T0000569:0;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	24733996	24733998	.	-	0	source_transcript=hg002_chrY_paternal_565.1;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.1;transcript_id=NA12877_ch_T0000569;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000569;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=stop_codon:NA12877_ch_T0000569;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	24735616	24735618	.	-	0	source_transcript=hg002_chrY_paternal_565.1;source_transcript_name=hg002_chrY_paternal_565.4;source_gene=hg002_chrY_paternal_565;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_565;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_565.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_565.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=hg002_chrY_paternal_565.1;transcript_id=NA12877_ch_T0000569;gene_id=NA12877_ch_G0000225;Parent=NA12877_ch_T0000569;transcript_name=hg002_chrY_paternal_565.4;gene_name=CDY1B;ID=start_codon:NA12877_ch_T0000569;Name=CDY1B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	24871359	24875156	.	-	.	source_gene_common_name=CSPG4P1Y;source_gene=hg002_chrY_paternal_556;alternative_source_transcripts=hg002_chrY_paternal_556.1;gene_id=NA12877_ch_G0000226;gene_biotype=transcribed_pseudogene;gene_name=CSPG4P1Y;gene_sources=liftoff;ID=NA12877_ch_G0000226;Name=CSPG4P1Y
NA12877_chrY	CAT	transcript	24871359	24875156	1000	-	.	source_transcript=hg002_chrY_paternal_556.1;source_transcript_name=hg002_chrY_paternal_556.1;source_gene=hg002_chrY_paternal_556;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_556;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_556.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_556.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P1Y;alternative_source_transcripts=hg002_chrY_paternal_556.1;transcript_id=NA12877_ch_T0000570;gene_id=NA12877_ch_G0000226;Parent=NA12877_ch_G0000226;transcript_name=hg002_chrY_paternal_556.1;gene_name=CSPG4P1Y;ID=NA12877_ch_T0000570;Name=CSPG4P1Y
NA12877_chrY	CAT	exon	24871359	24871430	.	-	.	source_transcript=hg002_chrY_paternal_556.1;source_transcript_name=hg002_chrY_paternal_556.1;source_gene=hg002_chrY_paternal_556;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_556;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_556.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_556.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P1Y;alternative_source_transcripts=hg002_chrY_paternal_556.1;transcript_id=NA12877_ch_T0000570;gene_id=NA12877_ch_G0000226;Parent=NA12877_ch_T0000570;transcript_name=hg002_chrY_paternal_556.1;gene_name=CSPG4P1Y;ID=exon:NA12877_ch_T0000570:0;Name=CSPG4P1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24871431	24874433	.	-	.	source_transcript=hg002_chrY_paternal_556.1;source_transcript_name=hg002_chrY_paternal_556.1;source_gene=hg002_chrY_paternal_556;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_556;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_556.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_556.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P1Y;alternative_source_transcripts=hg002_chrY_paternal_556.1;transcript_id=NA12877_ch_T0000570;gene_id=NA12877_ch_G0000226;Parent=NA12877_ch_T0000570;transcript_name=hg002_chrY_paternal_556.1;gene_name=CSPG4P1Y;ID=intron:NA12877_ch_T0000570:0;Name=CSPG4P1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24874434	24875156	.	-	.	source_transcript=hg002_chrY_paternal_556.1;source_transcript_name=hg002_chrY_paternal_556.1;source_gene=hg002_chrY_paternal_556;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_556;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_556.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_556.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P1Y;alternative_source_transcripts=hg002_chrY_paternal_556.1;transcript_id=NA12877_ch_T0000570;gene_id=NA12877_ch_G0000226;Parent=NA12877_ch_T0000570;transcript_name=hg002_chrY_paternal_556.1;gene_name=CSPG4P1Y;ID=exon:NA12877_ch_T0000570:1;Name=CSPG4P1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	24894365	24895895	.	+	.	source_gene_common_name=LOC102724034;source_gene=hg002_chrY_paternal_552;gene_id=NA12877_ch_G0000227;gene_biotype=lncRNA;gene_name=LOC102724034;gene_sources=liftoff;ID=NA12877_ch_G0000227;Name=LOC102724034
NA12877_chrY	CAT	transcript	24894365	24895895	1000	+	.	source_transcript=hg002_chrY_paternal_552.1;source_transcript_name=hg002_chrY_paternal_552.1;source_gene=hg002_chrY_paternal_552;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_552;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_552.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_552.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;transcript_id=NA12877_ch_T0000571;gene_id=NA12877_ch_G0000227;Parent=NA12877_ch_G0000227;transcript_name=hg002_chrY_paternal_552.1;gene_name=LOC102724034;ID=NA12877_ch_T0000571;Name=LOC102724034
NA12877_chrY	CAT	exon	24894365	24894390	.	+	.	source_transcript=hg002_chrY_paternal_552.1;source_transcript_name=hg002_chrY_paternal_552.1;source_gene=hg002_chrY_paternal_552;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_552;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_552.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;transcript_id=NA12877_ch_T0000571;gene_id=NA12877_ch_G0000227;Parent=NA12877_ch_T0000571;transcript_name=hg002_chrY_paternal_552.1;gene_name=LOC102724034;ID=exon:NA12877_ch_T0000571:0;Name=LOC102724034;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24894391	24895078	.	+	.	source_transcript=hg002_chrY_paternal_552.1;source_transcript_name=hg002_chrY_paternal_552.1;source_gene=hg002_chrY_paternal_552;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_552;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_552.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;transcript_id=NA12877_ch_T0000571;gene_id=NA12877_ch_G0000227;Parent=NA12877_ch_T0000571;transcript_name=hg002_chrY_paternal_552.1;gene_name=LOC102724034;ID=intron:NA12877_ch_T0000571:0;Name=LOC102724034;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24895079	24895203	.	+	.	source_transcript=hg002_chrY_paternal_552.1;source_transcript_name=hg002_chrY_paternal_552.1;source_gene=hg002_chrY_paternal_552;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_552;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_552.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;transcript_id=NA12877_ch_T0000571;gene_id=NA12877_ch_G0000227;Parent=NA12877_ch_T0000571;transcript_name=hg002_chrY_paternal_552.1;gene_name=LOC102724034;ID=exon:NA12877_ch_T0000571:1;Name=LOC102724034;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24895204	24895471	.	+	.	source_transcript=hg002_chrY_paternal_552.1;source_transcript_name=hg002_chrY_paternal_552.1;source_gene=hg002_chrY_paternal_552;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_552;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_552.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;transcript_id=NA12877_ch_T0000571;gene_id=NA12877_ch_G0000227;Parent=NA12877_ch_T0000571;transcript_name=hg002_chrY_paternal_552.1;gene_name=LOC102724034;ID=intron:NA12877_ch_T0000571:1;Name=LOC102724034;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24895472	24895895	.	+	.	source_transcript=hg002_chrY_paternal_552.1;source_transcript_name=hg002_chrY_paternal_552.1;source_gene=hg002_chrY_paternal_552;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_552;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_552.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;transcript_id=NA12877_ch_T0000571;gene_id=NA12877_ch_G0000227;Parent=NA12877_ch_T0000571;transcript_name=hg002_chrY_paternal_552.1;gene_name=LOC102724034;ID=exon:NA12877_ch_T0000571:2;Name=LOC102724034;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	24897894	24902758	.	-	.	source_gene_common_name=GOLGA2P2Y;source_gene=hg002_chrY_paternal_550;gene_id=NA12877_ch_G0000228;gene_biotype=transcribed_pseudogene;gene_name=GOLGA2P2Y;gene_sources=liftoff;ID=NA12877_ch_G0000228;Name=GOLGA2P2Y
NA12877_chrY	CAT	transcript	24897894	24902758	1000	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_G0000228;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=NA12877_ch_T0000572;Name=GOLGA2P2Y
NA12877_chrY	CAT	exon	24897894	24897977	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:NA12877_ch_T0000572:0;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24897978	24898059	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:NA12877_ch_T0000572:0;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24898060	24898152	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:NA12877_ch_T0000572:1;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24898153	24898241	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:NA12877_ch_T0000572:1;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24898242	24898430	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:NA12877_ch_T0000572:2;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24898431	24898685	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:NA12877_ch_T0000572:2;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24898686	24898774	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:NA12877_ch_T0000572:3;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24898775	24899194	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:NA12877_ch_T0000572:3;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24899195	24899269	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:NA12877_ch_T0000572:4;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24899270	24900625	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:NA12877_ch_T0000572:4;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24900626	24900683	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:NA12877_ch_T0000572:5;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24900684	24900979	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:NA12877_ch_T0000572:5;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24900980	24901331	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:NA12877_ch_T0000572:6;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24901332	24902450	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:NA12877_ch_T0000572:6;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24902451	24902529	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:NA12877_ch_T0000572:7;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24902530	24902715	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=intron:NA12877_ch_T0000572:7;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24902716	24902758	.	-	.	source_transcript=hg002_chrY_paternal_550.1;source_transcript_name=hg002_chrY_paternal_550.1;source_gene=hg002_chrY_paternal_550;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_550;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_550.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=NA12877_ch_T0000572;gene_id=NA12877_ch_G0000228;Parent=NA12877_ch_T0000572;transcript_name=hg002_chrY_paternal_550.1;gene_name=GOLGA2P2Y;ID=exon:NA12877_ch_T0000572:8;Name=GOLGA2P2Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	24963358	24979778	.	+	.	source_gene_common_name=SEPTIN14P23;source_gene=hg002_chrY_paternal_617;gene_id=NA12877_ch_G0000229;gene_biotype=transcribed_pseudogene;gene_name=SEPTIN14P23;gene_sources=transMap_pairwise;ID=NA12877_ch_G0000229;Name=SEPTIN14P23
NA12877_chrY	CAT	transcript	24963358	24979778	1000	+	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;transcript_id=NA12877_ch_T0000573;gene_id=NA12877_ch_G0000229;Parent=NA12877_ch_G0000229;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=NA12877_ch_T0000573;Name=SEPTIN14P23
NA12877_chrY	CAT	exon	24963358	24963451	.	+	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;transcript_id=NA12877_ch_T0000573;gene_id=NA12877_ch_G0000229;Parent=NA12877_ch_T0000573;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=exon:NA12877_ch_T0000573:0;Name=SEPTIN14P23;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24963452	24970992	.	+	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;transcript_id=NA12877_ch_T0000573;gene_id=NA12877_ch_G0000229;Parent=NA12877_ch_T0000573;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=intron:NA12877_ch_T0000573:0;Name=SEPTIN14P23;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24970993	24971161	.	+	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;transcript_id=NA12877_ch_T0000573;gene_id=NA12877_ch_G0000229;Parent=NA12877_ch_T0000573;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=exon:NA12877_ch_T0000573:1;Name=SEPTIN14P23;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24971162	24979199	.	+	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;transcript_id=NA12877_ch_T0000573;gene_id=NA12877_ch_G0000229;Parent=NA12877_ch_T0000573;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=intron:NA12877_ch_T0000573:1;Name=SEPTIN14P23;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24979200	24979778	.	+	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=transMap_pairwise;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;transcript_id=NA12877_ch_T0000573;gene_id=NA12877_ch_G0000229;Parent=NA12877_ch_T0000573;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=exon:NA12877_ch_T0000573:2;Name=SEPTIN14P23;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	24998642	25009641	.	-	.	source_gene_common_name=LOC107987240;source_gene=hg002_chrY_paternal_542;gene_id=NA12877_ch_G0000230;gene_biotype=lncRNA;gene_name=LOC107987240;gene_sources=liftoff;ID=NA12877_ch_G0000230;Name=LOC107987240
NA12877_chrY	CAT	transcript	24998642	25009641	1000	-	.	source_transcript=hg002_chrY_paternal_542.1;source_transcript_name=hg002_chrY_paternal_542.1;source_gene=hg002_chrY_paternal_542;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_542;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_542.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_542.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;transcript_id=NA12877_ch_T0000574;gene_id=NA12877_ch_G0000230;Parent=NA12877_ch_G0000230;transcript_name=hg002_chrY_paternal_542.1;gene_name=LOC107987240;ID=NA12877_ch_T0000574;Name=LOC107987240
NA12877_chrY	CAT	exon	24998642	24999299	.	-	.	source_transcript=hg002_chrY_paternal_542.1;source_transcript_name=hg002_chrY_paternal_542.1;source_gene=hg002_chrY_paternal_542;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_542;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_542.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_542.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;transcript_id=NA12877_ch_T0000574;gene_id=NA12877_ch_G0000230;Parent=NA12877_ch_T0000574;transcript_name=hg002_chrY_paternal_542.1;gene_name=LOC107987240;ID=exon:NA12877_ch_T0000574:0;Name=LOC107987240;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24999300	24999508	.	-	.	source_transcript=hg002_chrY_paternal_542.1;source_transcript_name=hg002_chrY_paternal_542.1;source_gene=hg002_chrY_paternal_542;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_542;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_542.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_542.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;transcript_id=NA12877_ch_T0000574;gene_id=NA12877_ch_G0000230;Parent=NA12877_ch_T0000574;transcript_name=hg002_chrY_paternal_542.1;gene_name=LOC107987240;ID=intron:NA12877_ch_T0000574:0;Name=LOC107987240;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	24999509	24999615	.	-	.	source_transcript=hg002_chrY_paternal_542.1;source_transcript_name=hg002_chrY_paternal_542.1;source_gene=hg002_chrY_paternal_542;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_542;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_542.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_542.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;transcript_id=NA12877_ch_T0000574;gene_id=NA12877_ch_G0000230;Parent=NA12877_ch_T0000574;transcript_name=hg002_chrY_paternal_542.1;gene_name=LOC107987240;ID=exon:NA12877_ch_T0000574:1;Name=LOC107987240;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	24999616	25009409	.	-	.	source_transcript=hg002_chrY_paternal_542.1;source_transcript_name=hg002_chrY_paternal_542.1;source_gene=hg002_chrY_paternal_542;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_542;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_542.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_542.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;transcript_id=NA12877_ch_T0000574;gene_id=NA12877_ch_G0000230;Parent=NA12877_ch_T0000574;transcript_name=hg002_chrY_paternal_542.1;gene_name=LOC107987240;ID=intron:NA12877_ch_T0000574:1;Name=LOC107987240;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25009410	25009641	.	-	.	source_transcript=hg002_chrY_paternal_542.1;source_transcript_name=hg002_chrY_paternal_542.1;source_gene=hg002_chrY_paternal_542;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_542;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_542.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_542.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;transcript_id=NA12877_ch_T0000574;gene_id=NA12877_ch_G0000230;Parent=NA12877_ch_T0000574;transcript_name=hg002_chrY_paternal_542.1;gene_name=LOC107987240;ID=exon:NA12877_ch_T0000574:2;Name=LOC107987240;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	25017522	25019155	.	+	.	source_gene_common_name=LOC101928626;source_gene=hg002_chrY_paternal_541;gene_id=NA12877_ch_G0000231;gene_biotype=lncRNA;gene_name=LOC101928626;gene_sources=liftoff;ID=NA12877_ch_G0000231;Name=LOC101928626
NA12877_chrY	CAT	transcript	25017522	25019155	1000	+	.	source_transcript=hg002_chrY_paternal_541.1;source_transcript_name=hg002_chrY_paternal_541.1;source_gene=hg002_chrY_paternal_541;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_541;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_541.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_541.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;transcript_id=NA12877_ch_T0000575;gene_id=NA12877_ch_G0000231;Parent=NA12877_ch_G0000231;transcript_name=hg002_chrY_paternal_541.1;gene_name=LOC101928626;ID=NA12877_ch_T0000575;Name=LOC101928626
NA12877_chrY	CAT	exon	25017522	25017612	.	+	.	source_transcript=hg002_chrY_paternal_541.1;source_transcript_name=hg002_chrY_paternal_541.1;source_gene=hg002_chrY_paternal_541;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_541;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_541.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_541.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;transcript_id=NA12877_ch_T0000575;gene_id=NA12877_ch_G0000231;Parent=NA12877_ch_T0000575;transcript_name=hg002_chrY_paternal_541.1;gene_name=LOC101928626;ID=exon:NA12877_ch_T0000575:0;Name=LOC101928626;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25017613	25018307	.	+	.	source_transcript=hg002_chrY_paternal_541.1;source_transcript_name=hg002_chrY_paternal_541.1;source_gene=hg002_chrY_paternal_541;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_541;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_541.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_541.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;transcript_id=NA12877_ch_T0000575;gene_id=NA12877_ch_G0000231;Parent=NA12877_ch_T0000575;transcript_name=hg002_chrY_paternal_541.1;gene_name=LOC101928626;ID=intron:NA12877_ch_T0000575:0;Name=LOC101928626;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25018308	25018574	.	+	.	source_transcript=hg002_chrY_paternal_541.1;source_transcript_name=hg002_chrY_paternal_541.1;source_gene=hg002_chrY_paternal_541;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_541;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_541.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_541.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;transcript_id=NA12877_ch_T0000575;gene_id=NA12877_ch_G0000231;Parent=NA12877_ch_T0000575;transcript_name=hg002_chrY_paternal_541.1;gene_name=LOC101928626;ID=exon:NA12877_ch_T0000575:1;Name=LOC101928626;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25018575	25018711	.	+	.	source_transcript=hg002_chrY_paternal_541.1;source_transcript_name=hg002_chrY_paternal_541.1;source_gene=hg002_chrY_paternal_541;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_541;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_541.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_541.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;transcript_id=NA12877_ch_T0000575;gene_id=NA12877_ch_G0000231;Parent=NA12877_ch_T0000575;transcript_name=hg002_chrY_paternal_541.1;gene_name=LOC101928626;ID=intron:NA12877_ch_T0000575:1;Name=LOC101928626;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25018712	25019155	.	+	.	source_transcript=hg002_chrY_paternal_541.1;source_transcript_name=hg002_chrY_paternal_541.1;source_gene=hg002_chrY_paternal_541;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_541;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_541.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_541.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;transcript_id=NA12877_ch_T0000575;gene_id=NA12877_ch_G0000231;Parent=NA12877_ch_T0000575;transcript_name=hg002_chrY_paternal_541.1;gene_name=LOC101928626;ID=exon:NA12877_ch_T0000575:2;Name=LOC101928626;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	25107902	25121007	.	+	.	source_gene_common_name=LOC107987350;source_gene=hg002_chrY_paternal_538;gene_id=NA12877_ch_G0000232;gene_biotype=lncRNA;gene_name=LOC107987350;gene_sources=liftoff;ID=NA12877_ch_G0000232;Name=LOC107987350
NA12877_chrY	CAT	transcript	25107902	25121007	1000	+	.	source_transcript=hg002_chrY_paternal_538.1;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000576;gene_id=NA12877_ch_G0000232;Parent=NA12877_ch_G0000232;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=NA12877_ch_T0000576;Name=LOC107987350
NA12877_chrY	CAT	exon	25107902	25108357	.	+	.	source_transcript=hg002_chrY_paternal_538.1;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000576;gene_id=NA12877_ch_G0000232;Parent=NA12877_ch_T0000576;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=exon:NA12877_ch_T0000576:0;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25108358	25114327	.	+	.	source_transcript=hg002_chrY_paternal_538.1;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000576;gene_id=NA12877_ch_G0000232;Parent=NA12877_ch_T0000576;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=intron:NA12877_ch_T0000576:0;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25114328	25116492	.	+	.	source_transcript=hg002_chrY_paternal_538.1;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000576;gene_id=NA12877_ch_G0000232;Parent=NA12877_ch_T0000576;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=exon:NA12877_ch_T0000576:1;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25116493	25117133	.	+	.	source_transcript=hg002_chrY_paternal_538.1;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000576;gene_id=NA12877_ch_G0000232;Parent=NA12877_ch_T0000576;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=intron:NA12877_ch_T0000576:1;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25117134	25121007	.	+	.	source_transcript=hg002_chrY_paternal_538.1;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000576;gene_id=NA12877_ch_G0000232;Parent=NA12877_ch_T0000576;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=exon:NA12877_ch_T0000576:2;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	25107902	25121007	1000	+	.	source_transcript=hg002_chrY_paternal_538.2;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000577;gene_id=NA12877_ch_G0000232;Parent=NA12877_ch_G0000232;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=NA12877_ch_T0000577;Name=LOC107987350
NA12877_chrY	CAT	exon	25107902	25108357	.	+	.	source_transcript=hg002_chrY_paternal_538.2;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000577;gene_id=NA12877_ch_G0000232;Parent=NA12877_ch_T0000577;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=exon:NA12877_ch_T0000577:0;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25108358	25113859	.	+	.	source_transcript=hg002_chrY_paternal_538.2;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000577;gene_id=NA12877_ch_G0000232;Parent=NA12877_ch_T0000577;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=intron:NA12877_ch_T0000577:0;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25113860	25116492	.	+	.	source_transcript=hg002_chrY_paternal_538.2;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000577;gene_id=NA12877_ch_G0000232;Parent=NA12877_ch_T0000577;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=exon:NA12877_ch_T0000577:1;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25116493	25117133	.	+	.	source_transcript=hg002_chrY_paternal_538.2;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000577;gene_id=NA12877_ch_G0000232;Parent=NA12877_ch_T0000577;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=intron:NA12877_ch_T0000577:1;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25117134	25121007	.	+	.	source_transcript=hg002_chrY_paternal_538.2;source_transcript_name=hg002_chrY_paternal_538.1;source_gene=hg002_chrY_paternal_538;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_538;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_538.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_538.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000577;gene_id=NA12877_ch_G0000232;Parent=NA12877_ch_T0000577;transcript_name=hg002_chrY_paternal_538.1;gene_name=LOC107987350;ID=exon:NA12877_ch_T0000577:2;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	25173271	25174402	.	+	.	source_gene_common_name=TTTY17C;source_gene=hg002_chrY_paternal_537;gene_id=NA12877_ch_G0000233;gene_biotype=lncRNA;gene_name=TTTY17C;gene_sources=liftoff;ID=NA12877_ch_G0000233;Name=TTTY17C
NA12877_chrY	CAT	transcript	25173271	25174402	1000	+	.	source_transcript=hg002_chrY_paternal_537.1;source_transcript_name=hg002_chrY_paternal_537.1;source_gene=hg002_chrY_paternal_537;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_537;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_537.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_537.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=NA12877_ch_T0000578;gene_id=NA12877_ch_G0000233;Parent=NA12877_ch_G0000233;transcript_name=hg002_chrY_paternal_537.1;gene_name=TTTY17C;ID=NA12877_ch_T0000578;Name=TTTY17C
NA12877_chrY	CAT	exon	25173271	25173330	.	+	.	source_transcript=hg002_chrY_paternal_537.1;source_transcript_name=hg002_chrY_paternal_537.1;source_gene=hg002_chrY_paternal_537;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_537;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_537.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_537.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=NA12877_ch_T0000578;gene_id=NA12877_ch_G0000233;Parent=NA12877_ch_T0000578;transcript_name=hg002_chrY_paternal_537.1;gene_name=TTTY17C;ID=exon:NA12877_ch_T0000578:0;Name=TTTY17C;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25173331	25174296	.	+	.	source_transcript=hg002_chrY_paternal_537.1;source_transcript_name=hg002_chrY_paternal_537.1;source_gene=hg002_chrY_paternal_537;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_537;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_537.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_537.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=NA12877_ch_T0000578;gene_id=NA12877_ch_G0000233;Parent=NA12877_ch_T0000578;transcript_name=hg002_chrY_paternal_537.1;gene_name=TTTY17C;ID=intron:NA12877_ch_T0000578:0;Name=TTTY17C;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25174297	25174402	.	+	.	source_transcript=hg002_chrY_paternal_537.1;source_transcript_name=hg002_chrY_paternal_537.1;source_gene=hg002_chrY_paternal_537;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_537;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_537.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_537.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=NA12877_ch_T0000578;gene_id=NA12877_ch_G0000233;Parent=NA12877_ch_T0000578;transcript_name=hg002_chrY_paternal_537.1;gene_name=TTTY17C;ID=exon:NA12877_ch_T0000578:1;Name=TTTY17C;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	25258144	25294963	.	+	.	source_gene_common_name=TTTY4B;source_gene=hg002_chrY_paternal_608;gene_id=NA12877_ch_G0000234;gene_biotype=lncRNA;gene_name=TTTY4B;gene_sources=liftoff;ID=NA12877_ch_G0000234;Name=TTTY4B
NA12877_chrY	CAT	transcript	25258144	25294963	1000	+	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=NA12877_ch_T0000579;gene_id=NA12877_ch_G0000234;Parent=NA12877_ch_G0000234;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=NA12877_ch_T0000579;Name=TTTY4B
NA12877_chrY	CAT	exon	25258144	25258304	.	+	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=NA12877_ch_T0000579;gene_id=NA12877_ch_G0000234;Parent=NA12877_ch_T0000579;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=exon:NA12877_ch_T0000579:0;Name=TTTY4B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25258305	25285306	.	+	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=NA12877_ch_T0000579;gene_id=NA12877_ch_G0000234;Parent=NA12877_ch_T0000579;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=intron:NA12877_ch_T0000579:0;Name=TTTY4B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25285307	25285382	.	+	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=NA12877_ch_T0000579;gene_id=NA12877_ch_G0000234;Parent=NA12877_ch_T0000579;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=exon:NA12877_ch_T0000579:1;Name=TTTY4B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25285383	25287186	.	+	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=NA12877_ch_T0000579;gene_id=NA12877_ch_G0000234;Parent=NA12877_ch_T0000579;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=intron:NA12877_ch_T0000579:1;Name=TTTY4B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25287187	25287294	.	+	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=NA12877_ch_T0000579;gene_id=NA12877_ch_G0000234;Parent=NA12877_ch_T0000579;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=exon:NA12877_ch_T0000579:2;Name=TTTY4B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25287295	25293962	.	+	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=NA12877_ch_T0000579;gene_id=NA12877_ch_G0000234;Parent=NA12877_ch_T0000579;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=intron:NA12877_ch_T0000579:2;Name=TTTY4B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25293963	25294963	.	+	.	source_transcript=hg002_chrY_paternal_608.1;source_transcript_name=hg002_chrY_paternal_608.1;source_gene=hg002_chrY_paternal_608;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_608;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_608.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_608.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=NA12877_ch_T0000579;gene_id=NA12877_ch_G0000234;Parent=NA12877_ch_T0000579;transcript_name=hg002_chrY_paternal_608.1;gene_name=TTTY4B;ID=exon:NA12877_ch_T0000579:3;Name=TTTY4B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	25305942	25327145	.	+	.	source_gene_common_name=BPY2;source_gene=hg002_chrY_paternal_607;gene_id=NA12877_ch_G0000235;gene_biotype=protein_coding;gene_name=BPY2;gene_sources=liftoff;ID=NA12877_ch_G0000235;Name=BPY2
NA12877_chrY	CAT	transcript	25305942	25327145	10000	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_G0000235;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=NA12877_ch_T0000580;Name=BPY2
NA12877_chrY	CAT	exon	25305942	25305972	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:NA12877_ch_T0000580:0;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25305973	25306247	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:NA12877_ch_T0000580:0;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25306248	25306370	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:NA12877_ch_T0000580:1;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25306371	25309435	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:NA12877_ch_T0000580:1;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25309436	25309572	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:NA12877_ch_T0000580:2;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25309573	25313981	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:NA12877_ch_T0000580:2;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25313982	25314100	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:NA12877_ch_T0000580:3;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25314023	25314100	.	+	0	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=CDS:NA12877_ch_T0000580:0;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	25314023	25314025	.	+	0	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=start_codon:NA12877_ch_T0000580;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25314101	25316159	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:NA12877_ch_T0000580:3;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25316160	25316277	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:NA12877_ch_T0000580:4;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25316160	25316277	.	+	0	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=CDS:NA12877_ch_T0000580:1;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25316278	25319131	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:NA12877_ch_T0000580:4;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25319132	25319237	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:NA12877_ch_T0000580:5;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25319132	25319237	.	+	2	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=CDS:NA12877_ch_T0000580:2;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25319238	25319929	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:NA12877_ch_T0000580:5;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25319930	25320054	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:NA12877_ch_T0000580:6;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25319930	25319948	.	+	1	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=CDS:NA12877_ch_T0000580:3;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	25319946	25319948	.	+	0	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=stop_codon:NA12877_ch_T0000580;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25320055	25326604	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:NA12877_ch_T0000580:6;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25326605	25326729	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:NA12877_ch_T0000580:7;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25326730	25326823	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=intron:NA12877_ch_T0000580:7;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25326824	25327145	.	+	.	source_transcript=hg002_chrY_paternal_607.1;source_transcript_name=hg002_chrY_paternal_607.1;source_gene=hg002_chrY_paternal_607;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_607;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_607.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_607.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;transcript_id=NA12877_ch_T0000580;gene_id=NA12877_ch_G0000235;Parent=NA12877_ch_T0000580;transcript_name=hg002_chrY_paternal_607.1;gene_name=BPY2;ID=exon:NA12877_ch_T0000580:8;Name=BPY2;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	25428043	25431384	.	-	.	source_gene_common_name=LOC105377238;source_gene=hg002_chrY_paternal_599;gene_id=NA12877_ch_G0000236;gene_biotype=lncRNA;gene_name=LOC105377238;gene_sources=liftoff;ID=NA12877_ch_G0000236;Name=LOC105377238
NA12877_chrY	CAT	transcript	25428043	25431384	1000	-	.	source_transcript=hg002_chrY_paternal_599.1;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;transcript_id=NA12877_ch_T0000581;gene_id=NA12877_ch_G0000236;Parent=NA12877_ch_G0000236;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=NA12877_ch_T0000581;Name=LOC105377238
NA12877_chrY	CAT	exon	25428043	25428143	.	-	.	source_transcript=hg002_chrY_paternal_599.1;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;transcript_id=NA12877_ch_T0000581;gene_id=NA12877_ch_G0000236;Parent=NA12877_ch_T0000581;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=exon:NA12877_ch_T0000581:0;Name=LOC105377238;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25428144	25430474	.	-	.	source_transcript=hg002_chrY_paternal_599.1;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;transcript_id=NA12877_ch_T0000581;gene_id=NA12877_ch_G0000236;Parent=NA12877_ch_T0000581;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=intron:NA12877_ch_T0000581:0;Name=LOC105377238;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25430475	25430539	.	-	.	source_transcript=hg002_chrY_paternal_599.1;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;transcript_id=NA12877_ch_T0000581;gene_id=NA12877_ch_G0000236;Parent=NA12877_ch_T0000581;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=exon:NA12877_ch_T0000581:1;Name=LOC105377238;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25430540	25431201	.	-	.	source_transcript=hg002_chrY_paternal_599.1;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;transcript_id=NA12877_ch_T0000581;gene_id=NA12877_ch_G0000236;Parent=NA12877_ch_T0000581;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=intron:NA12877_ch_T0000581:1;Name=LOC105377238;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25431202	25431384	.	-	.	source_transcript=hg002_chrY_paternal_599.1;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;transcript_id=NA12877_ch_T0000581;gene_id=NA12877_ch_G0000236;Parent=NA12877_ch_T0000581;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=exon:NA12877_ch_T0000581:2;Name=LOC105377238;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	25428043	25431384	1000	-	.	source_transcript=hg002_chrY_paternal_599.2;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;transcript_id=NA12877_ch_T0000582;gene_id=NA12877_ch_G0000236;Parent=NA12877_ch_G0000236;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=NA12877_ch_T0000582;Name=LOC105377238
NA12877_chrY	CAT	exon	25428043	25428143	.	-	.	source_transcript=hg002_chrY_paternal_599.2;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;transcript_id=NA12877_ch_T0000582;gene_id=NA12877_ch_G0000236;Parent=NA12877_ch_T0000582;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=exon:NA12877_ch_T0000582:0;Name=LOC105377238;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25428144	25430501	.	-	.	source_transcript=hg002_chrY_paternal_599.2;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;transcript_id=NA12877_ch_T0000582;gene_id=NA12877_ch_G0000236;Parent=NA12877_ch_T0000582;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=intron:NA12877_ch_T0000582:0;Name=LOC105377238;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25430502	25430539	.	-	.	source_transcript=hg002_chrY_paternal_599.2;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;transcript_id=NA12877_ch_T0000582;gene_id=NA12877_ch_G0000236;Parent=NA12877_ch_T0000582;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=exon:NA12877_ch_T0000582:1;Name=LOC105377238;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25430540	25431201	.	-	.	source_transcript=hg002_chrY_paternal_599.2;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;transcript_id=NA12877_ch_T0000582;gene_id=NA12877_ch_G0000236;Parent=NA12877_ch_T0000582;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=intron:NA12877_ch_T0000582:1;Name=LOC105377238;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25431202	25431384	.	-	.	source_transcript=hg002_chrY_paternal_599.2;source_transcript_name=hg002_chrY_paternal_599.1;source_gene=hg002_chrY_paternal_599;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_599;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_599.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_599.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377238;transcript_id=NA12877_ch_T0000582;gene_id=NA12877_ch_G0000236;Parent=NA12877_ch_T0000582;transcript_name=hg002_chrY_paternal_599.1;gene_name=LOC105377238;ID=exon:NA12877_ch_T0000582:2;Name=LOC105377238;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	25450999	25526491	.	-	.	source_gene_common_name=DAZ3;source_gene=hg002_chrY_paternal_526;gene_id=NA12877_ch_G0000237;gene_biotype=protein_coding;gene_name=DAZ3;gene_sources=liftoff;ID=NA12877_ch_G0000237;Name=DAZ3
NA12877_chrY	CAT	transcript	25450999	25526491	100	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_G0000237;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=NA12877_ch_T0000583;Name=DAZ3
NA12877_chrY	CAT	exon	25450999	25452855	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:0;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25452856	25456828	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:0;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25456829	25456927	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:1;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25456864	25456927	.	-	1	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:0;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	25456864	25456866	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=stop_codon:NA12877_ch_T0000583;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25456928	25461499	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:1;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25461500	25461534	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:2;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25461500	25461534	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:1;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25461535	25462279	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:2;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25462280	25462351	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:3;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25462280	25462351	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:2;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25462352	25486363	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:3;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25486364	25486435	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:4;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25486364	25486435	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:3;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25486436	25488740	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:4;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25488741	25488812	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:5;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25488741	25488812	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:4;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25488813	25491120	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:5;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25491121	25491192	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:6;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25491121	25491192	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:5;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25491193	25493497	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:6;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25493498	25493569	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:7;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25493498	25493569	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:6;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25493570	25495893	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:7;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25495894	25495965	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:8;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25495894	25495965	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:7;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25495966	25498277	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:8;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25498278	25498349	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:9;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25498278	25498349	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:8;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25498350	25500673	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:9;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25500674	25500745	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:10;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25500674	25500745	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:9;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25500746	25503063	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:10;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25503064	25503135	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:11;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25503064	25503135	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:10;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25503136	25505506	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:11;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25505507	25505578	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:12;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25505507	25505578	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:11;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25505579	25517825	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:12;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25517826	25517965	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:13;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25517826	25517965	.	-	2	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:12;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25517966	25518054	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:13;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25518055	25518118	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:14;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25518055	25518118	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:13;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25518119	25518554	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:14;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25518555	25518606	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:15;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25518555	25518606	.	-	1	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:14;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25518607	25519166	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:15;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25519167	25519258	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:16;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25519167	25519258	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:15;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25519259	25519532	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:16;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25519533	25519679	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:17;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25519533	25519679	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:16;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25519680	25526280	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=intron:NA12877_ch_T0000583:17;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25526281	25526491	.	-	.	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=exon:NA12877_ch_T0000583:18;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25526281	25526283	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=CDS:NA12877_ch_T0000583:17;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	25526281	25526283	.	-	0	source_transcript=hg002_chrY_paternal_526.1;source_transcript_name=hg002_chrY_paternal_526.1;source_gene=hg002_chrY_paternal_526;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_526;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_526.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=NA12877_ch_T0000583;gene_id=NA12877_ch_G0000237;Parent=NA12877_ch_T0000583;transcript_name=hg002_chrY_paternal_526.1;gene_name=DAZ3;ID=start_codon:NA12877_ch_T0000583;Name=DAZ3;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	25626489	25629830	.	+	.	source_gene_common_name=LOC105377241;source_gene=hg002_chrY_paternal_525;alternative_source_transcripts=hg002_chrY_paternal_525.1;gene_id=NA12877_ch_G0000238;gene_biotype=lncRNA;gene_name=LOC105377241;gene_sources=liftoff;ID=NA12877_ch_G0000238;Name=LOC105377241
NA12877_chrY	CAT	transcript	25626489	25629830	1000	+	.	source_transcript=hg002_chrY_paternal_525.1;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.1;transcript_id=NA12877_ch_T0000584;gene_id=NA12877_ch_G0000238;Parent=NA12877_ch_G0000238;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=NA12877_ch_T0000584;Name=LOC105377241
NA12877_chrY	CAT	exon	25626489	25626671	.	+	.	source_transcript=hg002_chrY_paternal_525.1;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.1;transcript_id=NA12877_ch_T0000584;gene_id=NA12877_ch_G0000238;Parent=NA12877_ch_T0000584;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=exon:NA12877_ch_T0000584:0;Name=LOC105377241;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25626672	25627333	.	+	.	source_transcript=hg002_chrY_paternal_525.1;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.1;transcript_id=NA12877_ch_T0000584;gene_id=NA12877_ch_G0000238;Parent=NA12877_ch_T0000584;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=intron:NA12877_ch_T0000584:0;Name=LOC105377241;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25627334	25627398	.	+	.	source_transcript=hg002_chrY_paternal_525.1;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.1;transcript_id=NA12877_ch_T0000584;gene_id=NA12877_ch_G0000238;Parent=NA12877_ch_T0000584;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=exon:NA12877_ch_T0000584:1;Name=LOC105377241;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25627399	25629729	.	+	.	source_transcript=hg002_chrY_paternal_525.1;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.1;transcript_id=NA12877_ch_T0000584;gene_id=NA12877_ch_G0000238;Parent=NA12877_ch_T0000584;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=intron:NA12877_ch_T0000584:1;Name=LOC105377241;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25629730	25629830	.	+	.	source_transcript=hg002_chrY_paternal_525.1;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.1;transcript_id=NA12877_ch_T0000584;gene_id=NA12877_ch_G0000238;Parent=NA12877_ch_T0000584;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=exon:NA12877_ch_T0000584:2;Name=LOC105377241;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	25626489	25629830	1000	+	.	source_transcript=hg002_chrY_paternal_525.2;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.2;transcript_id=NA12877_ch_T0000585;gene_id=NA12877_ch_G0000238;Parent=NA12877_ch_G0000238;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=NA12877_ch_T0000585;Name=LOC105377241
NA12877_chrY	CAT	exon	25626489	25626671	.	+	.	source_transcript=hg002_chrY_paternal_525.2;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.2;transcript_id=NA12877_ch_T0000585;gene_id=NA12877_ch_G0000238;Parent=NA12877_ch_T0000585;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=exon:NA12877_ch_T0000585:0;Name=LOC105377241;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25626672	25627333	.	+	.	source_transcript=hg002_chrY_paternal_525.2;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.2;transcript_id=NA12877_ch_T0000585;gene_id=NA12877_ch_G0000238;Parent=NA12877_ch_T0000585;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=intron:NA12877_ch_T0000585:0;Name=LOC105377241;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25627334	25627371	.	+	.	source_transcript=hg002_chrY_paternal_525.2;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.2;transcript_id=NA12877_ch_T0000585;gene_id=NA12877_ch_G0000238;Parent=NA12877_ch_T0000585;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=exon:NA12877_ch_T0000585:1;Name=LOC105377241;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25627372	25629729	.	+	.	source_transcript=hg002_chrY_paternal_525.2;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.2;transcript_id=NA12877_ch_T0000585;gene_id=NA12877_ch_G0000238;Parent=NA12877_ch_T0000585;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=intron:NA12877_ch_T0000585:1;Name=LOC105377241;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25629730	25629830	.	+	.	source_transcript=hg002_chrY_paternal_525.2;source_transcript_name=hg002_chrY_paternal_525.1;source_gene=hg002_chrY_paternal_525;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_525;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_525.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_525.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377241;alternative_source_transcripts=hg002_chrY_paternal_525.2;transcript_id=NA12877_ch_T0000585;gene_id=NA12877_ch_G0000238;Parent=NA12877_ch_T0000585;transcript_name=hg002_chrY_paternal_525.1;gene_name=LOC105377241;ID=exon:NA12877_ch_T0000585:2;Name=LOC105377241;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	25730724	25751926	.	-	.	source_gene_common_name=BPY2C;source_gene=hg002_chrY_paternal_520;gene_id=NA12877_ch_G0000239;gene_biotype=protein_coding;gene_name=BPY2C;gene_sources=liftoff;ID=NA12877_ch_G0000239;Name=BPY2C
NA12877_chrY	CAT	transcript	25730724	25751926	100	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_G0000239;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=NA12877_ch_T0000586;Name=BPY2C
NA12877_chrY	CAT	exon	25730724	25731045	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:NA12877_ch_T0000586:0;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25731046	25731139	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:NA12877_ch_T0000586:0;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25731140	25731264	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:NA12877_ch_T0000586:1;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25731265	25737814	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:NA12877_ch_T0000586:1;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25737815	25737939	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:NA12877_ch_T0000586:2;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25737921	25737939	.	-	1	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=CDS:NA12877_ch_T0000586:0;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	25737921	25737923	.	-	0	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=stop_codon:NA12877_ch_T0000586;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25737940	25738631	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:NA12877_ch_T0000586:2;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25738632	25738737	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:NA12877_ch_T0000586:3;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25738632	25738737	.	-	2	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=CDS:NA12877_ch_T0000586:1;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25738738	25741590	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:NA12877_ch_T0000586:3;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25741591	25741708	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:NA12877_ch_T0000586:4;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25741591	25741708	.	-	0	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=CDS:NA12877_ch_T0000586:2;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25741709	25743767	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:NA12877_ch_T0000586:4;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25743768	25743886	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:NA12877_ch_T0000586:5;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	25743768	25743845	.	-	0	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=CDS:NA12877_ch_T0000586:3;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	25743843	25743845	.	-	0	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=start_codon:NA12877_ch_T0000586;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25743887	25748295	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:NA12877_ch_T0000586:5;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25748296	25748432	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:NA12877_ch_T0000586:6;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25748433	25751497	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:NA12877_ch_T0000586:6;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25751498	25751620	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:NA12877_ch_T0000586:7;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25751621	25751895	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=intron:NA12877_ch_T0000586:7;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25751896	25751926	.	-	.	source_transcript=hg002_chrY_paternal_520.1;source_transcript_name=hg002_chrY_paternal_520.1;source_gene=hg002_chrY_paternal_520;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_520;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_520.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_520.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;transcript_id=NA12877_ch_T0000586;gene_id=NA12877_ch_G0000239;Parent=NA12877_ch_T0000586;transcript_name=hg002_chrY_paternal_520.1;gene_name=BPY2C;ID=exon:NA12877_ch_T0000586:8;Name=BPY2C;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	25762905	25799714	.	-	.	source_gene_common_name=TTTY4;source_gene=hg002_chrY_paternal_534;gene_id=NA12877_ch_G0000240;gene_biotype=lncRNA;gene_name=TTTY4;gene_sources=liftoff;ID=NA12877_ch_G0000240;Name=TTTY4
NA12877_chrY	CAT	transcript	25762905	25799714	1000	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;transcript_id=NA12877_ch_T0000587;gene_id=NA12877_ch_G0000240;Parent=NA12877_ch_G0000240;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=NA12877_ch_T0000587;Name=TTTY4
NA12877_chrY	CAT	exon	25762905	25763905	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;transcript_id=NA12877_ch_T0000587;gene_id=NA12877_ch_G0000240;Parent=NA12877_ch_T0000587;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=exon:NA12877_ch_T0000587:0;Name=TTTY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25763906	25770555	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;transcript_id=NA12877_ch_T0000587;gene_id=NA12877_ch_G0000240;Parent=NA12877_ch_T0000587;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=intron:NA12877_ch_T0000587:0;Name=TTTY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25770556	25770663	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;transcript_id=NA12877_ch_T0000587;gene_id=NA12877_ch_G0000240;Parent=NA12877_ch_T0000587;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=exon:NA12877_ch_T0000587:1;Name=TTTY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25770664	25772467	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;transcript_id=NA12877_ch_T0000587;gene_id=NA12877_ch_G0000240;Parent=NA12877_ch_T0000587;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=intron:NA12877_ch_T0000587:1;Name=TTTY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25772468	25772543	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;transcript_id=NA12877_ch_T0000587;gene_id=NA12877_ch_G0000240;Parent=NA12877_ch_T0000587;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=exon:NA12877_ch_T0000587:2;Name=TTTY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25772544	25799553	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;transcript_id=NA12877_ch_T0000587;gene_id=NA12877_ch_G0000240;Parent=NA12877_ch_T0000587;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=intron:NA12877_ch_T0000587:2;Name=TTTY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25799554	25799714	.	-	.	source_transcript=hg002_chrY_paternal_534.1;source_transcript_name=hg002_chrY_paternal_534.1;source_gene=hg002_chrY_paternal_534;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_534;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_534.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_534.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;transcript_id=NA12877_ch_T0000587;gene_id=NA12877_ch_G0000240;Parent=NA12877_ch_T0000587;transcript_name=hg002_chrY_paternal_534.1;gene_name=TTTY4;ID=exon:NA12877_ch_T0000587:3;Name=TTTY4;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	25883465	25884596	.	-	.	source_gene_common_name=TTTY17B;source_gene=hg002_chrY_paternal_611;alternative_source_transcripts=hg002_chrY_paternal_516.1;gene_id=NA12877_ch_G0000241;gene_biotype=lncRNA;gene_name=TTTY17B;gene_sources=liftoff;ID=NA12877_ch_G0000241;Name=TTTY17B
NA12877_chrY	CAT	transcript	25883465	25884596	1000	-	.	source_transcript=hg002_chrY_paternal_611.1;source_transcript_name=hg002_chrY_paternal_611.1;source_gene=hg002_chrY_paternal_611;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_611;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_611.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_611.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17B;alternative_source_transcripts=hg002_chrY_paternal_516.1;transcript_id=NA12877_ch_T0000588;gene_id=NA12877_ch_G0000241;Parent=NA12877_ch_G0000241;transcript_name=hg002_chrY_paternal_611.1;gene_name=TTTY17B;ID=NA12877_ch_T0000588;Name=TTTY17B
NA12877_chrY	CAT	exon	25883465	25883570	.	-	.	source_transcript=hg002_chrY_paternal_611.1;source_transcript_name=hg002_chrY_paternal_611.1;source_gene=hg002_chrY_paternal_611;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_611;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_611.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_611.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17B;alternative_source_transcripts=hg002_chrY_paternal_516.1;transcript_id=NA12877_ch_T0000588;gene_id=NA12877_ch_G0000241;Parent=NA12877_ch_T0000588;transcript_name=hg002_chrY_paternal_611.1;gene_name=TTTY17B;ID=exon:NA12877_ch_T0000588:0;Name=TTTY17B;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25883571	25884536	.	-	.	source_transcript=hg002_chrY_paternal_611.1;source_transcript_name=hg002_chrY_paternal_611.1;source_gene=hg002_chrY_paternal_611;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_611;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_611.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_611.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17B;alternative_source_transcripts=hg002_chrY_paternal_516.1;transcript_id=NA12877_ch_T0000588;gene_id=NA12877_ch_G0000241;Parent=NA12877_ch_T0000588;transcript_name=hg002_chrY_paternal_611.1;gene_name=TTTY17B;ID=intron:NA12877_ch_T0000588:0;Name=TTTY17B;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25884537	25884596	.	-	.	source_transcript=hg002_chrY_paternal_611.1;source_transcript_name=hg002_chrY_paternal_611.1;source_gene=hg002_chrY_paternal_611;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_611;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_611.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_611.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17B;alternative_source_transcripts=hg002_chrY_paternal_516.1;transcript_id=NA12877_ch_T0000588;gene_id=NA12877_ch_G0000241;Parent=NA12877_ch_T0000588;transcript_name=hg002_chrY_paternal_611.1;gene_name=TTTY17B;ID=exon:NA12877_ch_T0000588:1;Name=TTTY17B;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	25936867	25949972	.	-	.	source_gene_common_name=LOC107987350;source_gene=hg002_chrY_paternal_612;gene_id=NA12877_ch_G0000242;gene_biotype=lncRNA;gene_name=LOC107987350;gene_sources=liftoff;ID=NA12877_ch_G0000242;Name=LOC107987350
NA12877_chrY	CAT	transcript	25936867	25949972	1000	-	.	source_transcript=hg002_chrY_paternal_612.1;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000589;gene_id=NA12877_ch_G0000242;Parent=NA12877_ch_G0000242;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=NA12877_ch_T0000589;Name=LOC107987350
NA12877_chrY	CAT	exon	25936867	25940740	.	-	.	source_transcript=hg002_chrY_paternal_612.1;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000589;gene_id=NA12877_ch_G0000242;Parent=NA12877_ch_T0000589;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=exon:NA12877_ch_T0000589:0;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25940741	25941381	.	-	.	source_transcript=hg002_chrY_paternal_612.1;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000589;gene_id=NA12877_ch_G0000242;Parent=NA12877_ch_T0000589;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=intron:NA12877_ch_T0000589:0;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25941382	25943546	.	-	.	source_transcript=hg002_chrY_paternal_612.1;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000589;gene_id=NA12877_ch_G0000242;Parent=NA12877_ch_T0000589;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=exon:NA12877_ch_T0000589:1;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25943547	25949516	.	-	.	source_transcript=hg002_chrY_paternal_612.1;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000589;gene_id=NA12877_ch_G0000242;Parent=NA12877_ch_T0000589;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=intron:NA12877_ch_T0000589:1;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25949517	25949972	.	-	.	source_transcript=hg002_chrY_paternal_612.1;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000589;gene_id=NA12877_ch_G0000242;Parent=NA12877_ch_T0000589;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=exon:NA12877_ch_T0000589:2;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	25936867	25949972	1000	-	.	source_transcript=hg002_chrY_paternal_612.2;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000590;gene_id=NA12877_ch_G0000242;Parent=NA12877_ch_G0000242;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=NA12877_ch_T0000590;Name=LOC107987350
NA12877_chrY	CAT	exon	25936867	25940740	.	-	.	source_transcript=hg002_chrY_paternal_612.2;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000590;gene_id=NA12877_ch_G0000242;Parent=NA12877_ch_T0000590;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=exon:NA12877_ch_T0000590:0;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25940741	25941381	.	-	.	source_transcript=hg002_chrY_paternal_612.2;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000590;gene_id=NA12877_ch_G0000242;Parent=NA12877_ch_T0000590;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=intron:NA12877_ch_T0000590:0;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25941382	25944014	.	-	.	source_transcript=hg002_chrY_paternal_612.2;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000590;gene_id=NA12877_ch_G0000242;Parent=NA12877_ch_T0000590;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=exon:NA12877_ch_T0000590:1;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	25944015	25949516	.	-	.	source_transcript=hg002_chrY_paternal_612.2;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000590;gene_id=NA12877_ch_G0000242;Parent=NA12877_ch_T0000590;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=intron:NA12877_ch_T0000590:1;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	25949517	25949972	.	-	.	source_transcript=hg002_chrY_paternal_612.2;source_transcript_name=hg002_chrY_paternal_612.1;source_gene=hg002_chrY_paternal_612;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_612;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_612.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_612.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987350;transcript_id=NA12877_ch_T0000590;gene_id=NA12877_ch_G0000242;Parent=NA12877_ch_T0000590;transcript_name=hg002_chrY_paternal_612.1;gene_name=LOC107987350;ID=exon:NA12877_ch_T0000590:2;Name=LOC107987350;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	26038754	26040387	.	-	.	source_gene_common_name=LOC101928626;source_gene=hg002_chrY_paternal_615;gene_id=NA12877_ch_G0000243;gene_biotype=lncRNA;gene_name=LOC101928626;gene_sources=liftoff;ID=NA12877_ch_G0000243;Name=LOC101928626
NA12877_chrY	CAT	transcript	26038754	26040387	1000	-	.	source_transcript=hg002_chrY_paternal_615.1;source_transcript_name=hg002_chrY_paternal_615.1;source_gene=hg002_chrY_paternal_615;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_615;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_615.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_615.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;transcript_id=NA12877_ch_T0000591;gene_id=NA12877_ch_G0000243;Parent=NA12877_ch_G0000243;transcript_name=hg002_chrY_paternal_615.1;gene_name=LOC101928626;ID=NA12877_ch_T0000591;Name=LOC101928626
NA12877_chrY	CAT	exon	26038754	26039197	.	-	.	source_transcript=hg002_chrY_paternal_615.1;source_transcript_name=hg002_chrY_paternal_615.1;source_gene=hg002_chrY_paternal_615;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_615;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_615.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_615.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;transcript_id=NA12877_ch_T0000591;gene_id=NA12877_ch_G0000243;Parent=NA12877_ch_T0000591;transcript_name=hg002_chrY_paternal_615.1;gene_name=LOC101928626;ID=exon:NA12877_ch_T0000591:0;Name=LOC101928626;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26039198	26039334	.	-	.	source_transcript=hg002_chrY_paternal_615.1;source_transcript_name=hg002_chrY_paternal_615.1;source_gene=hg002_chrY_paternal_615;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_615;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_615.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_615.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;transcript_id=NA12877_ch_T0000591;gene_id=NA12877_ch_G0000243;Parent=NA12877_ch_T0000591;transcript_name=hg002_chrY_paternal_615.1;gene_name=LOC101928626;ID=intron:NA12877_ch_T0000591:0;Name=LOC101928626;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26039335	26039601	.	-	.	source_transcript=hg002_chrY_paternal_615.1;source_transcript_name=hg002_chrY_paternal_615.1;source_gene=hg002_chrY_paternal_615;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_615;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_615.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_615.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;transcript_id=NA12877_ch_T0000591;gene_id=NA12877_ch_G0000243;Parent=NA12877_ch_T0000591;transcript_name=hg002_chrY_paternal_615.1;gene_name=LOC101928626;ID=exon:NA12877_ch_T0000591:1;Name=LOC101928626;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26039602	26040296	.	-	.	source_transcript=hg002_chrY_paternal_615.1;source_transcript_name=hg002_chrY_paternal_615.1;source_gene=hg002_chrY_paternal_615;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_615;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_615.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_615.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;transcript_id=NA12877_ch_T0000591;gene_id=NA12877_ch_G0000243;Parent=NA12877_ch_T0000591;transcript_name=hg002_chrY_paternal_615.1;gene_name=LOC101928626;ID=intron:NA12877_ch_T0000591:1;Name=LOC101928626;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26040297	26040387	.	-	.	source_transcript=hg002_chrY_paternal_615.1;source_transcript_name=hg002_chrY_paternal_615.1;source_gene=hg002_chrY_paternal_615;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_615;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_615.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_615.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC101928626;transcript_id=NA12877_ch_T0000591;gene_id=NA12877_ch_G0000243;Parent=NA12877_ch_T0000591;transcript_name=hg002_chrY_paternal_615.1;gene_name=LOC101928626;ID=exon:NA12877_ch_T0000591:2;Name=LOC101928626;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	26048268	26059255	.	+	.	source_gene_common_name=LOC107987240;source_gene=hg002_chrY_paternal_616;gene_id=NA12877_ch_G0000244;gene_biotype=lncRNA;gene_name=LOC107987240;gene_sources=liftoff;ID=NA12877_ch_G0000244;Name=LOC107987240
NA12877_chrY	CAT	transcript	26048268	26059255	1000	+	.	source_transcript=hg002_chrY_paternal_616.1;source_transcript_name=hg002_chrY_paternal_616.1;source_gene=hg002_chrY_paternal_616;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_616;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_616.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_616.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;transcript_id=NA12877_ch_T0000592;gene_id=NA12877_ch_G0000244;Parent=NA12877_ch_G0000244;transcript_name=hg002_chrY_paternal_616.1;gene_name=LOC107987240;ID=NA12877_ch_T0000592;Name=LOC107987240
NA12877_chrY	CAT	exon	26048268	26048499	.	+	.	source_transcript=hg002_chrY_paternal_616.1;source_transcript_name=hg002_chrY_paternal_616.1;source_gene=hg002_chrY_paternal_616;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_616;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_616.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_616.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;transcript_id=NA12877_ch_T0000592;gene_id=NA12877_ch_G0000244;Parent=NA12877_ch_T0000592;transcript_name=hg002_chrY_paternal_616.1;gene_name=LOC107987240;ID=exon:NA12877_ch_T0000592:0;Name=LOC107987240;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26048500	26058281	.	+	.	source_transcript=hg002_chrY_paternal_616.1;source_transcript_name=hg002_chrY_paternal_616.1;source_gene=hg002_chrY_paternal_616;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_616;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_616.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_616.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;transcript_id=NA12877_ch_T0000592;gene_id=NA12877_ch_G0000244;Parent=NA12877_ch_T0000592;transcript_name=hg002_chrY_paternal_616.1;gene_name=LOC107987240;ID=intron:NA12877_ch_T0000592:0;Name=LOC107987240;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26058282	26058388	.	+	.	source_transcript=hg002_chrY_paternal_616.1;source_transcript_name=hg002_chrY_paternal_616.1;source_gene=hg002_chrY_paternal_616;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_616;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_616.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_616.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;transcript_id=NA12877_ch_T0000592;gene_id=NA12877_ch_G0000244;Parent=NA12877_ch_T0000592;transcript_name=hg002_chrY_paternal_616.1;gene_name=LOC107987240;ID=exon:NA12877_ch_T0000592:1;Name=LOC107987240;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26058389	26058597	.	+	.	source_transcript=hg002_chrY_paternal_616.1;source_transcript_name=hg002_chrY_paternal_616.1;source_gene=hg002_chrY_paternal_616;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_616;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_616.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_616.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;transcript_id=NA12877_ch_T0000592;gene_id=NA12877_ch_G0000244;Parent=NA12877_ch_T0000592;transcript_name=hg002_chrY_paternal_616.1;gene_name=LOC107987240;ID=intron:NA12877_ch_T0000592:1;Name=LOC107987240;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26058598	26059255	.	+	.	source_transcript=hg002_chrY_paternal_616.1;source_transcript_name=hg002_chrY_paternal_616.1;source_gene=hg002_chrY_paternal_616;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_616;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_616.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_616.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987240;transcript_id=NA12877_ch_T0000592;gene_id=NA12877_ch_G0000244;Parent=NA12877_ch_T0000592;transcript_name=hg002_chrY_paternal_616.1;gene_name=LOC107987240;ID=exon:NA12877_ch_T0000592:2;Name=LOC107987240;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	26078121	26094541	.	-	.	source_gene_common_name=SEPTIN14P23;source_gene=hg002_chrY_paternal_617;gene_id=NA12877_ch_G0000245;gene_biotype=transcribed_pseudogene;gene_name=SEPTIN14P23;gene_sources=liftoff;ID=NA12877_ch_G0000245;Name=SEPTIN14P23
NA12877_chrY	CAT	transcript	26078121	26094541	1000	-	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;transcript_id=NA12877_ch_T0000593;gene_id=NA12877_ch_G0000245;Parent=NA12877_ch_G0000245;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=NA12877_ch_T0000593;Name=SEPTIN14P23
NA12877_chrY	CAT	exon	26078121	26078699	.	-	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;transcript_id=NA12877_ch_T0000593;gene_id=NA12877_ch_G0000245;Parent=NA12877_ch_T0000593;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=exon:NA12877_ch_T0000593:0;Name=SEPTIN14P23;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26078700	26086737	.	-	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;transcript_id=NA12877_ch_T0000593;gene_id=NA12877_ch_G0000245;Parent=NA12877_ch_T0000593;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=intron:NA12877_ch_T0000593:0;Name=SEPTIN14P23;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26086738	26086906	.	-	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;transcript_id=NA12877_ch_T0000593;gene_id=NA12877_ch_G0000245;Parent=NA12877_ch_T0000593;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=exon:NA12877_ch_T0000593:1;Name=SEPTIN14P23;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26086907	26094447	.	-	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;transcript_id=NA12877_ch_T0000593;gene_id=NA12877_ch_G0000245;Parent=NA12877_ch_T0000593;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=intron:NA12877_ch_T0000593:1;Name=SEPTIN14P23;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26094448	26094541	.	-	.	source_transcript=hg002_chrY_paternal_617.1;source_transcript_name=hg002_chrY_paternal_617.1;source_gene=hg002_chrY_paternal_617;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_617;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_617.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P23;transcript_id=NA12877_ch_T0000593;gene_id=NA12877_ch_G0000245;Parent=NA12877_ch_T0000593;transcript_name=hg002_chrY_paternal_617.1;gene_name=SEPTIN14P23;ID=exon:NA12877_ch_T0000593:2;Name=SEPTIN14P23;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	26155132	26159996	.	+	.	source_gene_common_name=GOLGA2P3Y;source_gene=hg002_chrY_paternal_624;gene_id=NA12877_ch_G0000246;gene_biotype=transcribed_pseudogene;gene_name=GOLGA2P3Y;gene_sources=liftoff;ID=NA12877_ch_G0000246;Name=GOLGA2P3Y
NA12877_chrY	CAT	transcript	26155132	26159996	1000	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_G0000246;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=NA12877_ch_T0000594;Name=GOLGA2P3Y
NA12877_chrY	CAT	exon	26155132	26155174	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:NA12877_ch_T0000594:0;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26155175	26155360	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:NA12877_ch_T0000594:0;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26155361	26155439	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:NA12877_ch_T0000594:1;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26155440	26156558	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:NA12877_ch_T0000594:1;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26156559	26156910	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:NA12877_ch_T0000594:2;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26156911	26157206	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:NA12877_ch_T0000594:2;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26157207	26157264	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:NA12877_ch_T0000594:3;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26157265	26158620	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:NA12877_ch_T0000594:3;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26158621	26158695	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:NA12877_ch_T0000594:4;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26158696	26159115	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:NA12877_ch_T0000594:4;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26159116	26159204	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:NA12877_ch_T0000594:5;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26159205	26159459	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:NA12877_ch_T0000594:5;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26159460	26159648	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:NA12877_ch_T0000594:6;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26159649	26159737	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:NA12877_ch_T0000594:6;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26159738	26159830	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:NA12877_ch_T0000594:7;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26159831	26159912	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=intron:NA12877_ch_T0000594:7;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26159913	26159996	.	+	.	source_transcript=hg002_chrY_paternal_624.1;source_transcript_name=hg002_chrY_paternal_624.1;source_gene=hg002_chrY_paternal_624;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_624;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_624.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_624.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=NA12877_ch_T0000594;gene_id=NA12877_ch_G0000246;Parent=NA12877_ch_T0000594;transcript_name=hg002_chrY_paternal_624.1;gene_name=GOLGA2P3Y;ID=exon:NA12877_ch_T0000594:8;Name=GOLGA2P3Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	26161995	26163525	.	-	.	source_gene_common_name=LOC102724034;source_gene=hg002_chrY_paternal_626;gene_id=NA12877_ch_G0000247;gene_biotype=lncRNA;gene_name=LOC102724034;gene_sources=liftoff;ID=NA12877_ch_G0000247;Name=LOC102724034
NA12877_chrY	CAT	transcript	26161995	26163525	1000	-	.	source_transcript=hg002_chrY_paternal_626.1;source_transcript_name=hg002_chrY_paternal_626.1;source_gene=hg002_chrY_paternal_626;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_626;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_626.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_626.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;transcript_id=NA12877_ch_T0000595;gene_id=NA12877_ch_G0000247;Parent=NA12877_ch_G0000247;transcript_name=hg002_chrY_paternal_626.1;gene_name=LOC102724034;ID=NA12877_ch_T0000595;Name=LOC102724034
NA12877_chrY	CAT	exon	26161995	26162418	.	-	.	source_transcript=hg002_chrY_paternal_626.1;source_transcript_name=hg002_chrY_paternal_626.1;source_gene=hg002_chrY_paternal_626;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_626;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_626.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_626.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;transcript_id=NA12877_ch_T0000595;gene_id=NA12877_ch_G0000247;Parent=NA12877_ch_T0000595;transcript_name=hg002_chrY_paternal_626.1;gene_name=LOC102724034;ID=exon:NA12877_ch_T0000595:0;Name=LOC102724034;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26162419	26162686	.	-	.	source_transcript=hg002_chrY_paternal_626.1;source_transcript_name=hg002_chrY_paternal_626.1;source_gene=hg002_chrY_paternal_626;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_626;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_626.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_626.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;transcript_id=NA12877_ch_T0000595;gene_id=NA12877_ch_G0000247;Parent=NA12877_ch_T0000595;transcript_name=hg002_chrY_paternal_626.1;gene_name=LOC102724034;ID=intron:NA12877_ch_T0000595:0;Name=LOC102724034;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26162687	26162811	.	-	.	source_transcript=hg002_chrY_paternal_626.1;source_transcript_name=hg002_chrY_paternal_626.1;source_gene=hg002_chrY_paternal_626;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_626;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_626.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_626.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;transcript_id=NA12877_ch_T0000595;gene_id=NA12877_ch_G0000247;Parent=NA12877_ch_T0000595;transcript_name=hg002_chrY_paternal_626.1;gene_name=LOC102724034;ID=exon:NA12877_ch_T0000595:1;Name=LOC102724034;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26162812	26163499	.	-	.	source_transcript=hg002_chrY_paternal_626.1;source_transcript_name=hg002_chrY_paternal_626.1;source_gene=hg002_chrY_paternal_626;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_626;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_626.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_626.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;transcript_id=NA12877_ch_T0000595;gene_id=NA12877_ch_G0000247;Parent=NA12877_ch_T0000595;transcript_name=hg002_chrY_paternal_626.1;gene_name=LOC102724034;ID=intron:NA12877_ch_T0000595:1;Name=LOC102724034;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26163500	26163525	.	-	.	source_transcript=hg002_chrY_paternal_626.1;source_transcript_name=hg002_chrY_paternal_626.1;source_gene=hg002_chrY_paternal_626;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_626;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_626.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_626.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102724034;transcript_id=NA12877_ch_T0000595;gene_id=NA12877_ch_G0000247;Parent=NA12877_ch_T0000595;transcript_name=hg002_chrY_paternal_626.1;gene_name=LOC102724034;ID=exon:NA12877_ch_T0000595:2;Name=LOC102724034;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	26321941	26325337	.	+	.	source_gene_common_name=CDY1;source_gene=hg002_chrY_paternal_638;alternative_source_transcripts=hg002_chrY_paternal_638.1;gene_id=NA12877_ch_G0000248;gene_biotype=protein_coding;gene_name=CDY1;gene_sources=liftoff;ID=NA12877_ch_G0000248;Name=CDY1
NA12877_chrY	CAT	transcript	26321941	26324728	100	+	.	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1;transcript_id=NA12877_ch_T0000596;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_G0000248;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=NA12877_ch_T0000596;Name=CDY1
NA12877_chrY	CAT	exon	26321941	26323660	.	+	.	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1;transcript_id=NA12877_ch_T0000596;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000596;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=exon:NA12877_ch_T0000596:0;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	26322269	26323660	.	+	0	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1;transcript_id=NA12877_ch_T0000596;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000596;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=CDS:NA12877_ch_T0000596:0;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	26322269	26322271	.	+	0	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1;transcript_id=NA12877_ch_T0000596;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000596;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=start_codon:NA12877_ch_T0000596;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26323661	26324280	.	+	.	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1;transcript_id=NA12877_ch_T0000596;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000596;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=intron:NA12877_ch_T0000596:0;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26324281	26324728	.	+	.	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1;transcript_id=NA12877_ch_T0000596;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000596;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=exon:NA12877_ch_T0000596:1;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	26324281	26324301	.	+	0	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1;transcript_id=NA12877_ch_T0000596;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000596;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=CDS:NA12877_ch_T0000596:1;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	26324299	26324301	.	+	0	source_transcript=hg002_chrY_paternal_638.1;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.1;transcript_id=NA12877_ch_T0000596;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000596;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=stop_codon:NA12877_ch_T0000596;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	26321943	26324728	100	+	.	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3;transcript_id=NA12877_ch_T0000597;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_G0000248;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=NA12877_ch_T0000597;Name=CDY1
NA12877_chrY	CAT	exon	26321943	26323860	.	+	.	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3;transcript_id=NA12877_ch_T0000597;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000597;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=exon:NA12877_ch_T0000597:0;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	26322269	26323860	.	+	0	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3;transcript_id=NA12877_ch_T0000597;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000597;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=CDS:NA12877_ch_T0000597:0;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	26322269	26322271	.	+	0	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3;transcript_id=NA12877_ch_T0000597;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000597;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=start_codon:NA12877_ch_T0000597;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26323861	26324280	.	+	.	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3;transcript_id=NA12877_ch_T0000597;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000597;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=intron:NA12877_ch_T0000597:0;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26324281	26324728	.	+	.	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3;transcript_id=NA12877_ch_T0000597;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000597;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=exon:NA12877_ch_T0000597:1;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	26324281	26324353	.	+	1	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3;transcript_id=NA12877_ch_T0000597;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000597;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=CDS:NA12877_ch_T0000597:1;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	26324351	26324353	.	+	0	source_transcript=hg002_chrY_paternal_638.3;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.3;transcript_id=NA12877_ch_T0000597;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000597;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=stop_codon:NA12877_ch_T0000597;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	26321943	26324164	100	+	.	source_transcript=hg002_chrY_paternal_638.2;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.2;transcript_id=NA12877_ch_T0000598;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_G0000248;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=NA12877_ch_T0000598;Name=CDY1
NA12877_chrY	CAT	exon	26321943	26324164	.	+	.	source_transcript=hg002_chrY_paternal_638.2;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.2;transcript_id=NA12877_ch_T0000598;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000598;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=exon:NA12877_ch_T0000598:0;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	26322269	26323891	.	+	0	source_transcript=hg002_chrY_paternal_638.2;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.2;transcript_id=NA12877_ch_T0000598;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000598;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=CDS:NA12877_ch_T0000598:0;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	26322269	26322271	.	+	0	source_transcript=hg002_chrY_paternal_638.2;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.2;transcript_id=NA12877_ch_T0000598;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000598;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=start_codon:NA12877_ch_T0000598;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	26323889	26323891	.	+	0	source_transcript=hg002_chrY_paternal_638.2;source_transcript_name=hg002_chrY_paternal_638.4;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_638.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.2;transcript_id=NA12877_ch_T0000598;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000598;transcript_name=hg002_chrY_paternal_638.4;gene_name=CDY1;ID=stop_codon:NA12877_ch_T0000598;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	26321943	26325337	1000	+	.	source_transcript=hg002_chrY_paternal_638.4;source_transcript_name=hg002_chrY_paternal_638.1;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_638.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.4;transcript_id=NA12877_ch_T0000599;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_G0000248;transcript_name=hg002_chrY_paternal_638.1;gene_name=CDY1;ID=NA12877_ch_T0000599;Name=CDY1
NA12877_chrY	CAT	exon	26321943	26323860	.	+	.	source_transcript=hg002_chrY_paternal_638.4;source_transcript_name=hg002_chrY_paternal_638.1;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_638.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.4;transcript_id=NA12877_ch_T0000599;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000599;transcript_name=hg002_chrY_paternal_638.1;gene_name=CDY1;ID=exon:NA12877_ch_T0000599:0;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26323861	26324280	.	+	.	source_transcript=hg002_chrY_paternal_638.4;source_transcript_name=hg002_chrY_paternal_638.1;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_638.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.4;transcript_id=NA12877_ch_T0000599;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000599;transcript_name=hg002_chrY_paternal_638.1;gene_name=CDY1;ID=intron:NA12877_ch_T0000599:0;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26324281	26324480	.	+	.	source_transcript=hg002_chrY_paternal_638.4;source_transcript_name=hg002_chrY_paternal_638.1;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_638.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.4;transcript_id=NA12877_ch_T0000599;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000599;transcript_name=hg002_chrY_paternal_638.1;gene_name=CDY1;ID=exon:NA12877_ch_T0000599:1;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26324481	26325255	.	+	.	source_transcript=hg002_chrY_paternal_638.4;source_transcript_name=hg002_chrY_paternal_638.1;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_638.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.4;transcript_id=NA12877_ch_T0000599;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000599;transcript_name=hg002_chrY_paternal_638.1;gene_name=CDY1;ID=intron:NA12877_ch_T0000599:1;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26325256	26325337	.	+	.	source_transcript=hg002_chrY_paternal_638.4;source_transcript_name=hg002_chrY_paternal_638.1;source_gene=hg002_chrY_paternal_638;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_638;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_638.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_638.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;alternative_source_transcripts=hg002_chrY_paternal_638.4;transcript_id=NA12877_ch_T0000599;gene_id=NA12877_ch_G0000248;Parent=NA12877_ch_T0000599;transcript_name=hg002_chrY_paternal_638.1;gene_name=CDY1;ID=exon:NA12877_ch_T0000599:2;Name=CDY1;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	26428321	26433219	.	+	.	source_gene_common_name=TTTY3;source_gene=hg002_chrY_paternal_572;alternative_source_transcripts=hg002_chrY_paternal_645.1;gene_id=NA12877_ch_G0000249;gene_biotype=lncRNA;gene_name=TTTY3;gene_sources=liftoff;ID=NA12877_ch_G0000249;Name=TTTY3
NA12877_chrY	CAT	transcript	26428321	26433219	1000	+	.	source_transcript=hg002_chrY_paternal_572.1;source_transcript_name=hg002_chrY_paternal_572.1;source_gene=hg002_chrY_paternal_572;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_572;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_572.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_572.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;alternative_source_transcripts=hg002_chrY_paternal_645.1;transcript_id=NA12877_ch_T0000600;gene_id=NA12877_ch_G0000249;Parent=NA12877_ch_G0000249;transcript_name=hg002_chrY_paternal_572.1;gene_name=TTTY3;ID=NA12877_ch_T0000600;Name=TTTY3
NA12877_chrY	CAT	exon	26428321	26428424	.	+	.	source_transcript=hg002_chrY_paternal_572.1;source_transcript_name=hg002_chrY_paternal_572.1;source_gene=hg002_chrY_paternal_572;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_572;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_572.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_572.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;alternative_source_transcripts=hg002_chrY_paternal_645.1;transcript_id=NA12877_ch_T0000600;gene_id=NA12877_ch_G0000249;Parent=NA12877_ch_T0000600;transcript_name=hg002_chrY_paternal_572.1;gene_name=TTTY3;ID=exon:NA12877_ch_T0000600:0;Name=TTTY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26428425	26430622	.	+	.	source_transcript=hg002_chrY_paternal_572.1;source_transcript_name=hg002_chrY_paternal_572.1;source_gene=hg002_chrY_paternal_572;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_572;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_572.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_572.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;alternative_source_transcripts=hg002_chrY_paternal_645.1;transcript_id=NA12877_ch_T0000600;gene_id=NA12877_ch_G0000249;Parent=NA12877_ch_T0000600;transcript_name=hg002_chrY_paternal_572.1;gene_name=TTTY3;ID=intron:NA12877_ch_T0000600:0;Name=TTTY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26430623	26430757	.	+	.	source_transcript=hg002_chrY_paternal_572.1;source_transcript_name=hg002_chrY_paternal_572.1;source_gene=hg002_chrY_paternal_572;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_572;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_572.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_572.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;alternative_source_transcripts=hg002_chrY_paternal_645.1;transcript_id=NA12877_ch_T0000600;gene_id=NA12877_ch_G0000249;Parent=NA12877_ch_T0000600;transcript_name=hg002_chrY_paternal_572.1;gene_name=TTTY3;ID=exon:NA12877_ch_T0000600:1;Name=TTTY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26430758	26433114	.	+	.	source_transcript=hg002_chrY_paternal_572.1;source_transcript_name=hg002_chrY_paternal_572.1;source_gene=hg002_chrY_paternal_572;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_572;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_572.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_572.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;alternative_source_transcripts=hg002_chrY_paternal_645.1;transcript_id=NA12877_ch_T0000600;gene_id=NA12877_ch_G0000249;Parent=NA12877_ch_T0000600;transcript_name=hg002_chrY_paternal_572.1;gene_name=TTTY3;ID=intron:NA12877_ch_T0000600:1;Name=TTTY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26433115	26433219	.	+	.	source_transcript=hg002_chrY_paternal_572.1;source_transcript_name=hg002_chrY_paternal_572.1;source_gene=hg002_chrY_paternal_572;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_572;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_572.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_572.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;alternative_source_transcripts=hg002_chrY_paternal_645.1;transcript_id=NA12877_ch_T0000600;gene_id=NA12877_ch_G0000249;Parent=NA12877_ch_T0000600;transcript_name=hg002_chrY_paternal_572.1;gene_name=TTTY3;ID=exon:NA12877_ch_T0000600:2;Name=TTTY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	26729145	26732269	.	-	.	source_gene_common_name=LOC107987352;source_gene=hg002_chrY_paternal_665;alternative_source_transcripts=hg002_chrY_paternal_665.1;gene_id=NA12877_ch_G0000250;gene_biotype=lncRNA;gene_name=LOC107987352;gene_sources=liftoff;ID=NA12877_ch_G0000250;Name=LOC107987352
NA12877_chrY	CAT	transcript	26729145	26732269	1000	-	.	source_transcript=hg002_chrY_paternal_665.1;source_transcript_name=hg002_chrY_paternal_665.1;source_gene=hg002_chrY_paternal_665;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_665;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_665.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_665.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987352;alternative_source_transcripts=hg002_chrY_paternal_665.1;transcript_id=NA12877_ch_T0000601;gene_id=NA12877_ch_G0000250;Parent=NA12877_ch_G0000250;transcript_name=hg002_chrY_paternal_665.1;gene_name=LOC107987352;ID=NA12877_ch_T0000601;Name=LOC107987352
NA12877_chrY	CAT	exon	26729145	26730473	.	-	.	source_transcript=hg002_chrY_paternal_665.1;source_transcript_name=hg002_chrY_paternal_665.1;source_gene=hg002_chrY_paternal_665;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_665;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_665.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987352;alternative_source_transcripts=hg002_chrY_paternal_665.1;transcript_id=NA12877_ch_T0000601;gene_id=NA12877_ch_G0000250;Parent=NA12877_ch_T0000601;transcript_name=hg002_chrY_paternal_665.1;gene_name=LOC107987352;ID=exon:NA12877_ch_T0000601:0;Name=LOC107987352;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26730474	26732008	.	-	.	source_transcript=hg002_chrY_paternal_665.1;source_transcript_name=hg002_chrY_paternal_665.1;source_gene=hg002_chrY_paternal_665;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_665;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_665.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987352;alternative_source_transcripts=hg002_chrY_paternal_665.1;transcript_id=NA12877_ch_T0000601;gene_id=NA12877_ch_G0000250;Parent=NA12877_ch_T0000601;transcript_name=hg002_chrY_paternal_665.1;gene_name=LOC107987352;ID=intron:NA12877_ch_T0000601:0;Name=LOC107987352;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26732009	26732069	.	-	.	source_transcript=hg002_chrY_paternal_665.1;source_transcript_name=hg002_chrY_paternal_665.1;source_gene=hg002_chrY_paternal_665;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_665;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_665.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987352;alternative_source_transcripts=hg002_chrY_paternal_665.1;transcript_id=NA12877_ch_T0000601;gene_id=NA12877_ch_G0000250;Parent=NA12877_ch_T0000601;transcript_name=hg002_chrY_paternal_665.1;gene_name=LOC107987352;ID=exon:NA12877_ch_T0000601:1;Name=LOC107987352;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26732070	26732186	.	-	.	source_transcript=hg002_chrY_paternal_665.1;source_transcript_name=hg002_chrY_paternal_665.1;source_gene=hg002_chrY_paternal_665;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_665;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_665.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987352;alternative_source_transcripts=hg002_chrY_paternal_665.1;transcript_id=NA12877_ch_T0000601;gene_id=NA12877_ch_G0000250;Parent=NA12877_ch_T0000601;transcript_name=hg002_chrY_paternal_665.1;gene_name=LOC107987352;ID=intron:NA12877_ch_T0000601:1;Name=LOC107987352;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26732187	26732269	.	-	.	source_transcript=hg002_chrY_paternal_665.1;source_transcript_name=hg002_chrY_paternal_665.1;source_gene=hg002_chrY_paternal_665;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_665;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_665.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC107987352;alternative_source_transcripts=hg002_chrY_paternal_665.1;transcript_id=NA12877_ch_T0000601;gene_id=NA12877_ch_G0000250;Parent=NA12877_ch_T0000601;transcript_name=hg002_chrY_paternal_665.1;gene_name=LOC107987352;ID=exon:NA12877_ch_T0000601:2;Name=LOC107987352;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	26893711	26935216	.	-	.	source_gene_common_name=REREP1Y;source_gene=hg002_chrY_paternal_596;alternative_source_transcripts=hg002_chrY_paternal_668.1;gene_id=NA12877_ch_G0000251;gene_biotype=transcribed_pseudogene;gene_name=REREP1Y;gene_sources=liftoff;ID=NA12877_ch_G0000251;Name=REREP1Y
NA12877_chrY	CAT	transcript	26893711	26935216	1000	-	.	source_transcript=hg002_chrY_paternal_596.1;source_transcript_name=hg002_chrY_paternal_596.1;source_gene=hg002_chrY_paternal_596;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_596;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_596.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_596.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;alternative_source_transcripts=hg002_chrY_paternal_668.1;transcript_id=NA12877_ch_T0000602;gene_id=NA12877_ch_G0000251;Parent=NA12877_ch_G0000251;transcript_name=hg002_chrY_paternal_596.1;gene_name=REREP1Y;ID=NA12877_ch_T0000602;Name=REREP1Y
NA12877_chrY	CAT	exon	26893711	26898300	.	-	.	source_transcript=hg002_chrY_paternal_596.1;source_transcript_name=hg002_chrY_paternal_596.1;source_gene=hg002_chrY_paternal_596;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_596;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_596.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_596.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;alternative_source_transcripts=hg002_chrY_paternal_668.1;transcript_id=NA12877_ch_T0000602;gene_id=NA12877_ch_G0000251;Parent=NA12877_ch_T0000602;transcript_name=hg002_chrY_paternal_596.1;gene_name=REREP1Y;ID=exon:NA12877_ch_T0000602:0;Name=REREP1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26898301	26907918	.	-	.	source_transcript=hg002_chrY_paternal_596.1;source_transcript_name=hg002_chrY_paternal_596.1;source_gene=hg002_chrY_paternal_596;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_596;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_596.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_596.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;alternative_source_transcripts=hg002_chrY_paternal_668.1;transcript_id=NA12877_ch_T0000602;gene_id=NA12877_ch_G0000251;Parent=NA12877_ch_T0000602;transcript_name=hg002_chrY_paternal_596.1;gene_name=REREP1Y;ID=intron:NA12877_ch_T0000602:0;Name=REREP1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26907919	26907991	.	-	.	source_transcript=hg002_chrY_paternal_596.1;source_transcript_name=hg002_chrY_paternal_596.1;source_gene=hg002_chrY_paternal_596;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_596;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_596.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_596.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;alternative_source_transcripts=hg002_chrY_paternal_668.1;transcript_id=NA12877_ch_T0000602;gene_id=NA12877_ch_G0000251;Parent=NA12877_ch_T0000602;transcript_name=hg002_chrY_paternal_596.1;gene_name=REREP1Y;ID=exon:NA12877_ch_T0000602:1;Name=REREP1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	26907992	26934813	.	-	.	source_transcript=hg002_chrY_paternal_596.1;source_transcript_name=hg002_chrY_paternal_596.1;source_gene=hg002_chrY_paternal_596;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_596;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_596.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_596.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;alternative_source_transcripts=hg002_chrY_paternal_668.1;transcript_id=NA12877_ch_T0000602;gene_id=NA12877_ch_G0000251;Parent=NA12877_ch_T0000602;transcript_name=hg002_chrY_paternal_596.1;gene_name=REREP1Y;ID=intron:NA12877_ch_T0000602:1;Name=REREP1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	26934814	26935216	.	-	.	source_transcript=hg002_chrY_paternal_596.1;source_transcript_name=hg002_chrY_paternal_596.1;source_gene=hg002_chrY_paternal_596;source_gene_biotype=transcribed_pseudogene;original_gene_id=hg002_chrY_paternal_596;gene_biotype=transcribed_pseudogene;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_596.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_596.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;alternative_source_transcripts=hg002_chrY_paternal_668.1;transcript_id=NA12877_ch_T0000602;gene_id=NA12877_ch_G0000251;Parent=NA12877_ch_T0000602;transcript_name=hg002_chrY_paternal_596.1;gene_name=REREP1Y;ID=exon:NA12877_ch_T0000602:2;Name=REREP1Y;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	26947226	26947363	.	+	.	source_gene_common_name=LOC124900506;source_gene=hg002_chrY_paternal_597;alternative_source_transcripts=hg002_chrY_paternal_669.1;gene_id=NA12877_ch_G0000252;gene_biotype=snoRNA;gene_name=LOC124900506;gene_sources=liftoff;ID=NA12877_ch_G0000252;Name=LOC124900506
NA12877_chrY	CAT	transcript	26947226	26947363	1000	+	.	source_transcript=hg002_chrY_paternal_597.1;source_transcript_name=hg002_chrY_paternal_597.1;source_gene=hg002_chrY_paternal_597;source_gene_biotype=snoRNA;original_gene_id=hg002_chrY_paternal_597;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=hg002_chrY_paternal_597.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_597.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124900506;alternative_source_transcripts=hg002_chrY_paternal_669.1;transcript_id=NA12877_ch_T0000603;gene_id=NA12877_ch_G0000252;Parent=NA12877_ch_G0000252;transcript_name=hg002_chrY_paternal_597.1;gene_name=LOC124900506;ID=NA12877_ch_T0000603;Name=LOC124900506
NA12877_chrY	CAT	exon	26947226	26947363	.	+	.	source_transcript=hg002_chrY_paternal_597.1;source_transcript_name=hg002_chrY_paternal_597.1;source_gene=hg002_chrY_paternal_597;source_gene_biotype=snoRNA;original_gene_id=hg002_chrY_paternal_597;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=hg002_chrY_paternal_597.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_597.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC124900506;alternative_source_transcripts=hg002_chrY_paternal_669.1;transcript_id=NA12877_ch_T0000603;gene_id=NA12877_ch_G0000252;Parent=NA12877_ch_T0000603;transcript_name=hg002_chrY_paternal_597.1;gene_name=LOC124900506;ID=exon:NA12877_ch_T0000603:0;Name=LOC124900506;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	27100999	27108993	.	-	.	source_gene_common_name=LOC105377244;source_gene=hg002_chrY_paternal_673;alternative_source_transcripts=hg002_chrY_paternal_673.1;gene_id=NA12877_ch_G0000253;gene_biotype=lncRNA;gene_name=LOC105377244;gene_sources=liftoff;ID=NA12877_ch_G0000253;Name=LOC105377244
NA12877_chrY	CAT	transcript	27100999	27108993	1000	-	.	source_transcript=hg002_chrY_paternal_673.1;source_transcript_name=hg002_chrY_paternal_673.1;source_gene=hg002_chrY_paternal_673;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_673;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_673.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_673.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377244;alternative_source_transcripts=hg002_chrY_paternal_673.1;transcript_id=NA12877_ch_T0000604;gene_id=NA12877_ch_G0000253;Parent=NA12877_ch_G0000253;transcript_name=hg002_chrY_paternal_673.1;gene_name=LOC105377244;ID=NA12877_ch_T0000604;Name=LOC105377244
NA12877_chrY	CAT	exon	27100999	27105601	.	-	.	source_transcript=hg002_chrY_paternal_673.1;source_transcript_name=hg002_chrY_paternal_673.1;source_gene=hg002_chrY_paternal_673;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_673;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_673.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_673.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377244;alternative_source_transcripts=hg002_chrY_paternal_673.1;transcript_id=NA12877_ch_T0000604;gene_id=NA12877_ch_G0000253;Parent=NA12877_ch_T0000604;transcript_name=hg002_chrY_paternal_673.1;gene_name=LOC105377244;ID=exon:NA12877_ch_T0000604:0;Name=LOC105377244;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	27105602	27106467	.	-	.	source_transcript=hg002_chrY_paternal_673.1;source_transcript_name=hg002_chrY_paternal_673.1;source_gene=hg002_chrY_paternal_673;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_673;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_673.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_673.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377244;alternative_source_transcripts=hg002_chrY_paternal_673.1;transcript_id=NA12877_ch_T0000604;gene_id=NA12877_ch_G0000253;Parent=NA12877_ch_T0000604;transcript_name=hg002_chrY_paternal_673.1;gene_name=LOC105377244;ID=intron:NA12877_ch_T0000604:0;Name=LOC105377244;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	27106468	27106634	.	-	.	source_transcript=hg002_chrY_paternal_673.1;source_transcript_name=hg002_chrY_paternal_673.1;source_gene=hg002_chrY_paternal_673;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_673;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_673.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_673.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377244;alternative_source_transcripts=hg002_chrY_paternal_673.1;transcript_id=NA12877_ch_T0000604;gene_id=NA12877_ch_G0000253;Parent=NA12877_ch_T0000604;transcript_name=hg002_chrY_paternal_673.1;gene_name=LOC105377244;ID=exon:NA12877_ch_T0000604:1;Name=LOC105377244;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	27106635	27108762	.	-	.	source_transcript=hg002_chrY_paternal_673.1;source_transcript_name=hg002_chrY_paternal_673.1;source_gene=hg002_chrY_paternal_673;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_673;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_673.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_673.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377244;alternative_source_transcripts=hg002_chrY_paternal_673.1;transcript_id=NA12877_ch_T0000604;gene_id=NA12877_ch_G0000253;Parent=NA12877_ch_T0000604;transcript_name=hg002_chrY_paternal_673.1;gene_name=LOC105377244;ID=intron:NA12877_ch_T0000604:1;Name=LOC105377244;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	27108763	27108993	.	-	.	source_transcript=hg002_chrY_paternal_673.1;source_transcript_name=hg002_chrY_paternal_673.1;source_gene=hg002_chrY_paternal_673;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_673;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_673.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_673.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC105377244;alternative_source_transcripts=hg002_chrY_paternal_673.1;transcript_id=NA12877_ch_T0000604;gene_id=NA12877_ch_G0000253;Parent=NA12877_ch_T0000604;transcript_name=hg002_chrY_paternal_673.1;gene_name=LOC105377244;ID=exon:NA12877_ch_T0000604:2;Name=LOC105377244;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	27124484	27140651	.	+	.	source_gene_common_name=LOC102723869;source_gene=hg002_chrY_paternal_675;alternative_source_transcripts=hg002_chrY_paternal_675.1;gene_id=NA12877_ch_G0000254;gene_biotype=lncRNA;gene_name=LOC102723869;gene_sources=liftoff;ID=NA12877_ch_G0000254;Name=LOC102723869
NA12877_chrY	CAT	transcript	27124484	27140651	1000	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1;transcript_id=NA12877_ch_T0000605;gene_id=NA12877_ch_G0000254;Parent=NA12877_ch_G0000254;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=NA12877_ch_T0000605;Name=LOC102723869
NA12877_chrY	CAT	exon	27124484	27124751	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1;transcript_id=NA12877_ch_T0000605;gene_id=NA12877_ch_G0000254;Parent=NA12877_ch_T0000605;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=exon:NA12877_ch_T0000605:0;Name=LOC102723869;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	27124752	27136781	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1;transcript_id=NA12877_ch_T0000605;gene_id=NA12877_ch_G0000254;Parent=NA12877_ch_T0000605;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=intron:NA12877_ch_T0000605:0;Name=LOC102723869;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	27136782	27136810	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1;transcript_id=NA12877_ch_T0000605;gene_id=NA12877_ch_G0000254;Parent=NA12877_ch_T0000605;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=exon:NA12877_ch_T0000605:1;Name=LOC102723869;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	27136811	27136904	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1;transcript_id=NA12877_ch_T0000605;gene_id=NA12877_ch_G0000254;Parent=NA12877_ch_T0000605;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=intron:NA12877_ch_T0000605:1;Name=LOC102723869;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	27136905	27136977	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1;transcript_id=NA12877_ch_T0000605;gene_id=NA12877_ch_G0000254;Parent=NA12877_ch_T0000605;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=exon:NA12877_ch_T0000605:2;Name=LOC102723869;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	27136978	27140620	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1;transcript_id=NA12877_ch_T0000605;gene_id=NA12877_ch_G0000254;Parent=NA12877_ch_T0000605;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=intron:NA12877_ch_T0000605:2;Name=LOC102723869;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	27140621	27140651	.	+	.	source_transcript=hg002_chrY_paternal_675.1;source_transcript_name=hg002_chrY_paternal_675.1;source_gene=hg002_chrY_paternal_675;source_gene_biotype=lncRNA;original_gene_id=hg002_chrY_paternal_675;gene_biotype=lncRNA;transcript_biotype=lnc_RNA;alignment_id=hg002_chrY_paternal_675.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_675.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LOC102723869;alternative_source_transcripts=hg002_chrY_paternal_675.1;transcript_id=NA12877_ch_T0000605;gene_id=NA12877_ch_G0000254;Parent=NA12877_ch_T0000605;transcript_name=hg002_chrY_paternal_675.1;gene_name=LOC102723869;ID=exon:NA12877_ch_T0000605:3;Name=LOC102723869;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	51234343	51249055	.	+	.	source_gene_common_name=SPRY3;source_gene=hg002_chrY_paternal_683;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;gene_id=NA12877_ch_G0000255;gene_biotype=protein_coding;gene_name=SPRY3;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000255;Name=SPRY3
NA12877_chrY	CAT	transcript	51234343	51249055	100	+	.	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000606;gene_id=NA12877_ch_G0000255;Parent=NA12877_ch_G0000255;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=NA12877_ch_T0000606;Name=SPRY3
NA12877_chrY	CAT	exon	51234343	51234683	.	+	.	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000606;gene_id=NA12877_ch_G0000255;Parent=NA12877_ch_T0000606;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=exon:NA12877_ch_T0000606:0;Name=SPRY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51234684	51240319	.	+	.	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000606;gene_id=NA12877_ch_G0000255;Parent=NA12877_ch_T0000606;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=intron:NA12877_ch_T0000606:0;Name=SPRY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51240320	51249055	.	+	.	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000606;gene_id=NA12877_ch_G0000255;Parent=NA12877_ch_T0000606;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=exon:NA12877_ch_T0000606:1;Name=SPRY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51240426	51241292	.	+	0	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000606;gene_id=NA12877_ch_G0000255;Parent=NA12877_ch_T0000606;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=CDS:NA12877_ch_T0000606:0;Name=SPRY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51240426	51240428	.	+	0	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000606;gene_id=NA12877_ch_G0000255;Parent=NA12877_ch_T0000606;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=start_codon:NA12877_ch_T0000606;Name=SPRY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51241290	51241292	.	+	0	source_transcript=hg002_chrY_paternal_683.1;source_transcript_name=hg002_chrY_paternal_683.1;source_gene=hg002_chrY_paternal_683;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_683;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_683.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_683.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SPRY3;alternative_source_transcripts=hg002_chrY_paternal_683.1,hg002_chrY_paternal_683.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000606;gene_id=NA12877_ch_G0000255;Parent=NA12877_ch_T0000606;transcript_name=hg002_chrY_paternal_683.1;gene_name=SPRY3;ID=stop_codon:NA12877_ch_T0000606;Name=SPRY3;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	51350713	51413146	.	+	.	source_gene_common_name=VAMP7;source_gene=hg002_chrY_paternal_687;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;gene_id=NA12877_ch_G0000256;gene_biotype=protein_coding;gene_name=VAMP7;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000256;Name=VAMP7
NA12877_chrY	CAT	transcript	51350713	51413146	100	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_G0000256;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=NA12877_ch_T0000607;Name=VAMP7
NA12877_chrY	CAT	exon	51350713	51350816	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000607:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51350817	51358826	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000607:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51358827	51358916	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000607:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51358836	51358916	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000607:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51358836	51358838	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=start_codon:NA12877_ch_T0000607;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51358917	51367480	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000607:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51367481	51367618	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000607:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51367481	51367618	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000607:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51367619	51369865	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000607:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51369866	51369956	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000607:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51369866	51369956	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000607:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51369957	51389184	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000607:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51389185	51389252	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000607:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51389185	51389252	.	+	2	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000607:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51389253	51409078	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000607:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51409079	51409171	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000607:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51409079	51409171	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000607:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51409172	51411259	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000607:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51411260	51413146	.	+	.	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000607:6;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51411260	51411328	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000607:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51411326	51411328	.	+	0	source_transcript=hg002_chrY_paternal_687.1;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.1,hg002_chrY_paternal_687.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000607;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000607;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=stop_codon:NA12877_ch_T0000607;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51350713	51413146	100	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_G0000256;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=NA12877_ch_T0000608;Name=VAMP7
NA12877_chrY	CAT	exon	51350713	51350816	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000608:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51350817	51358826	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000608:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51358827	51358981	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000608:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51358836	51358981	.	+	0	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000608:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51358836	51358838	.	+	0	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=start_codon:NA12877_ch_T0000608;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51358982	51364991	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000608:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51364992	51365049	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000608:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51364992	51365049	.	+	1	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000608:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51365050	51367480	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000608:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51367481	51367618	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000608:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51367481	51367618	.	+	0	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000608:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51367619	51369865	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000608:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51369866	51369956	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000608:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51369866	51369956	.	+	0	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000608:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51369957	51409078	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000608:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51409079	51409171	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000608:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51409079	51409171	.	+	2	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000608:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51409172	51411259	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000608:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51411260	51413146	.	+	.	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000608:6;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51411260	51411516	.	+	2	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000608:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51411514	51411516	.	+	0	source_transcript=hg002_chrY_paternal_687.2;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.2,hg002_chrY_paternal_687.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000608;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000608;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=stop_codon:NA12877_ch_T0000608;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51350713	51413146	100	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_G0000256;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=NA12877_ch_T0000609;Name=VAMP7
NA12877_chrY	CAT	exon	51350713	51350816	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000609:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51350817	51358826	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000609:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51358827	51358981	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000609:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51358836	51358981	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000609:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51358836	51358838	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=start_codon:NA12877_ch_T0000609;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51358982	51364991	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000609:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51364992	51365049	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000609:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51364992	51365049	.	+	1	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000609:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51365050	51367480	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000609:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51367481	51367618	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000609:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51367481	51367618	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000609:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51367619	51369865	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000609:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51369866	51369956	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000609:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51369866	51369956	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000609:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51369957	51389184	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000609:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51389185	51389252	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000609:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51389185	51389252	.	+	2	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000609:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51389253	51409078	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000609:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51409079	51409171	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000609:6;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51409079	51409171	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000609:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51409172	51411259	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000609:6;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51411260	51413146	.	+	.	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000609:7;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51411260	51411328	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000609:6;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51411326	51411328	.	+	0	source_transcript=hg002_chrY_paternal_687.3;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.3,hg002_chrY_paternal_687.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000609;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000609;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=stop_codon:NA12877_ch_T0000609;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51350713	51413146	100	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_G0000256;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=NA12877_ch_T0000610;Name=VAMP7
NA12877_chrY	CAT	exon	51350713	51350816	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000610:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51350817	51358826	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000610:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51358827	51359002	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000610:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51358998	51359002	.	+	0	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000610:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51358998	51359000	.	+	0	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=start_codon:NA12877_ch_T0000610;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51359003	51364991	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000610:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51364992	51365049	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000610:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51364992	51365049	.	+	1	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000610:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51365050	51367480	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000610:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51367481	51367618	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000610:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51367481	51367618	.	+	0	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000610:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51367619	51369865	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000610:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51369866	51369956	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000610:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51369866	51369956	.	+	0	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000610:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51369957	51409078	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000610:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51409079	51409171	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000610:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51409079	51409171	.	+	2	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000610:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51409172	51411259	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000610:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51411260	51413146	.	+	.	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000610:6;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51411260	51411516	.	+	2	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000610:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51411514	51411516	.	+	0	source_transcript=hg002_chrY_paternal_687.6;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.6,hg002_chrY_paternal_687.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000610;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000610;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=stop_codon:NA12877_ch_T0000610;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51350713	51413146	100	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_G0000256;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=NA12877_ch_T0000611;Name=VAMP7
NA12877_chrY	CAT	exon	51350713	51350816	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000611:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51350817	51358826	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000611:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51358827	51359002	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000611:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51358998	51359002	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000611:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51358998	51359000	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=start_codon:NA12877_ch_T0000611;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51359003	51364991	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000611:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51364992	51365049	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000611:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51364992	51365049	.	+	1	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000611:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51365050	51367480	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000611:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51367481	51367618	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000611:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51367481	51367618	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000611:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51367619	51369865	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000611:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51369866	51369956	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000611:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51369866	51369956	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000611:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51369957	51389184	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000611:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51389185	51389252	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000611:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51389185	51389252	.	+	2	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000611:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51389253	51409078	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000611:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51409079	51409171	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000611:6;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51409079	51409171	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000611:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51409172	51411259	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=intron:NA12877_ch_T0000611:6;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51411260	51413146	.	+	.	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=exon:NA12877_ch_T0000611:7;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51411260	51411328	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=CDS:NA12877_ch_T0000611:6;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51411326	51411328	.	+	0	source_transcript=hg002_chrY_paternal_687.7;source_transcript_name=hg002_chrY_paternal_687.7;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_687.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.7,hg002_chrY_paternal_687.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000611;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000611;transcript_name=hg002_chrY_paternal_687.7;gene_name=VAMP7;ID=stop_codon:NA12877_ch_T0000611;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51350713	51413146	1000	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_G0000256;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=NA12877_ch_T0000612;Name=VAMP7
NA12877_chrY	CAT	exon	51350713	51350816	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000612;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000612:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51350817	51358826	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000612;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:NA12877_ch_T0000612:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51358827	51358981	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000612;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000612:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51358982	51367480	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000612;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:NA12877_ch_T0000612:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51367481	51367618	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000612;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000612:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51367619	51369865	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000612;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:NA12877_ch_T0000612:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51369866	51369956	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000612;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000612:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51369957	51389184	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000612;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:NA12877_ch_T0000612:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51389185	51389252	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000612;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000612:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51389253	51409078	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000612;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:NA12877_ch_T0000612:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51409079	51409171	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000612;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000612:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51409172	51411259	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000612;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:NA12877_ch_T0000612:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51411260	51413146	.	+	.	source_transcript=hg002_chrY_paternal_687.4;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.4,hg002_chrY_paternal_687.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000612;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000612;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000612:6;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51350713	51413146	1000	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_G0000256;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=NA12877_ch_T0000613;Name=VAMP7
NA12877_chrY	CAT	exon	51350713	51350816	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000613:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51350817	51358826	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:NA12877_ch_T0000613:0;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51358827	51358916	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000613:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51358917	51364991	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:NA12877_ch_T0000613:1;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51364992	51365049	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000613:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51365050	51367480	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:NA12877_ch_T0000613:2;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51367481	51367618	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000613:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51367619	51369865	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:NA12877_ch_T0000613:3;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51369866	51369956	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000613:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51369957	51389184	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:NA12877_ch_T0000613:4;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51389185	51389252	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000613:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51389253	51409078	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:NA12877_ch_T0000613:5;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51409079	51409171	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000613:6;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51409172	51411259	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=intron:NA12877_ch_T0000613:6;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51411260	51413146	.	+	.	source_transcript=hg002_chrY_paternal_687.5;source_transcript_name=hg002_chrY_paternal_687.1;source_gene=hg002_chrY_paternal_687;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_687;gene_biotype=protein_coding;transcript_biotype=transcript;alignment_id=hg002_chrY_paternal_687.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_687.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=hg002_chrY_paternal_687.5,hg002_chrY_paternal_687.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000613;gene_id=NA12877_ch_G0000256;Parent=NA12877_ch_T0000613;transcript_name=hg002_chrY_paternal_687.1;gene_name=VAMP7;ID=exon:NA12877_ch_T0000613:7;Name=VAMP7;rna_support=False;reference_support=False
NA12877_chrY	CAT	gene	51466933	51480197	.	+	.	source_gene_common_name=IL9R;source_gene=hg002_chrY_paternal_691;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;gene_id=NA12877_ch_G0000257;gene_biotype=protein_coding;gene_name=IL9R;gene_sources=liftoff,augTM;ID=NA12877_ch_G0000257;Name=IL9R
NA12877_chrY	CAT	transcript	51466933	51480197	100	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_G0000257;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=NA12877_ch_T0000614;Name=IL9R
NA12877_chrY	CAT	exon	51466933	51467168	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000614:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51467125	51467168	.	+	0	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000614:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51467125	51467127	.	+	0	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:NA12877_ch_T0000614;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51467169	51470788	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000614:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51470789	51470889	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000614:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51470789	51470889	.	+	1	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000614:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51470890	51472290	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000614:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472291	51472404	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000614:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472291	51472404	.	+	2	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000614:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472405	51472833	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000614:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472834	51472945	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000614:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472834	51472945	.	+	2	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000614:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472946	51473061	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000614:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473062	51473240	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000614:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473062	51473240	.	+	1	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000614:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473241	51473804	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000614:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473805	51473950	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000614:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473805	51473950	.	+	2	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000614:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473951	51474665	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000614:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51474666	51474864	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000614:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51474666	51474864	.	+	0	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000614:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51474865	51475467	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000614:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51475468	51475573	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000614:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51475468	51475573	.	+	2	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000614:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51475574	51479195	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000614:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51479196	51480197	.	+	.	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000614:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51479196	51479232	.	+	1	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000614:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51479230	51479232	.	+	0	source_transcript=hg002_chrY_paternal_691.1;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.1;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.1,hg002_chrY_paternal_691.1;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000614;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000614;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:NA12877_ch_T0000614;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51466990	51480197	100	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_G0000257;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=NA12877_ch_T0000615;Name=IL9R
NA12877_chrY	CAT	exon	51466990	51467168	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000615:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51467125	51467168	.	+	0	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000615:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51467125	51467127	.	+	0	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:NA12877_ch_T0000615;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51467169	51470788	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000615:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51470789	51470889	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000615:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51470789	51470889	.	+	1	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000615:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51470890	51472266	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000615:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472267	51472404	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000615:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472267	51472404	.	+	2	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000615:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472405	51472833	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000615:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472834	51472945	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000615:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472834	51472945	.	+	2	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000615:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472946	51473061	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000615:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473062	51473240	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000615:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473062	51473240	.	+	1	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000615:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473241	51473804	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000615:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473805	51473950	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000615:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473805	51473950	.	+	2	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000615:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473951	51474662	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000615:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51474663	51474864	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000615:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51474663	51474864	.	+	0	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000615:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51474865	51475467	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000615:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51475468	51475573	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000615:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51475468	51475573	.	+	2	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000615:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51475574	51476908	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000615:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51476909	51476993	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000615:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51476909	51476993	.	+	1	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000615:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51476994	51477283	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000615:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51477284	51477516	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000615:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51477284	51477516	.	+	0	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000615:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51477517	51479195	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000615:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51479196	51480197	.	+	.	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000615:10;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51479196	51479232	.	+	1	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000615:10;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51479230	51479232	.	+	0	source_transcript=hg002_chrY_paternal_691.2;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.2;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.2,hg002_chrY_paternal_691.2;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000615;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000615;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:NA12877_ch_T0000615;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51466990	51480197	100	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_G0000257;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=NA12877_ch_T0000616;Name=IL9R
NA12877_chrY	CAT	exon	51466990	51467168	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000616:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51467125	51467168	.	+	0	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000616:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51467125	51467127	.	+	0	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:NA12877_ch_T0000616;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51467169	51470788	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000616:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51470789	51470889	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000616:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51470789	51470889	.	+	1	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000616:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51470890	51472266	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000616:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472267	51472404	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000616:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472267	51472404	.	+	2	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000616:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472405	51472833	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000616:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472834	51472945	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000616:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472834	51472945	.	+	2	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000616:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472946	51473061	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000616:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473062	51473240	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000616:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473062	51473240	.	+	1	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000616:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473241	51473804	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000616:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473805	51473950	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000616:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473805	51473950	.	+	2	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000616:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473951	51474662	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000616:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51474663	51474864	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000616:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51474663	51474864	.	+	0	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000616:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51474865	51475467	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000616:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51475468	51475573	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000616:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51475468	51475573	.	+	2	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000616:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51475574	51479195	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000616:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51479196	51480197	.	+	.	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000616:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51479196	51479232	.	+	1	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000616:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51479230	51479232	.	+	0	source_transcript=hg002_chrY_paternal_691.3;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.3;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.3,hg002_chrY_paternal_691.3;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000616;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000616;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:NA12877_ch_T0000616;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51466990	51480197	100	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_G0000257;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=NA12877_ch_T0000617;Name=IL9R
NA12877_chrY	CAT	exon	51466990	51467168	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000617:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51467125	51467168	.	+	0	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000617:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51467125	51467127	.	+	0	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:NA12877_ch_T0000617;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51467169	51470788	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000617:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51470789	51470889	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000617:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51470789	51470889	.	+	1	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000617:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51470890	51472266	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000617:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472267	51472404	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000617:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472267	51472404	.	+	2	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000617:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472405	51472833	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000617:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472834	51472945	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000617:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472834	51472945	.	+	2	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000617:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472946	51473061	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000617:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473062	51473240	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000617:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473062	51473240	.	+	1	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000617:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473241	51473804	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000617:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473805	51473950	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000617:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473805	51473950	.	+	2	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000617:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473951	51474665	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000617:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51474666	51474864	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000617:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51474666	51474864	.	+	0	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000617:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51474865	51475467	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000617:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51475468	51475573	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000617:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51475468	51475573	.	+	2	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000617:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51475574	51476908	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000617:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51476909	51476993	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000617:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51476909	51476993	.	+	1	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000617:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51476994	51477283	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000617:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51477284	51477516	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000617:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51477284	51477516	.	+	0	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000617:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51477517	51479195	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000617:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51479196	51480197	.	+	.	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000617:10;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51479196	51479232	.	+	1	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000617:10;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51479230	51479232	.	+	0	source_transcript=hg002_chrY_paternal_691.4;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.4;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.4,hg002_chrY_paternal_691.4;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000617;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000617;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:NA12877_ch_T0000617;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51466990	51480729	100	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_G0000257;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=NA12877_ch_T0000618;Name=IL9R
NA12877_chrY	CAT	exon	51466990	51467168	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000618:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51467125	51467168	.	+	0	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000618:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51467125	51467127	.	+	0	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:NA12877_ch_T0000618;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51467169	51470788	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000618:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51470789	51470889	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000618:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51470789	51470889	.	+	1	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000618:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51470890	51472290	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000618:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472291	51472404	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000618:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472291	51472404	.	+	2	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000618:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472405	51472833	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000618:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472834	51472945	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000618:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472834	51472945	.	+	2	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000618:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472946	51473061	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000618:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473062	51473240	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000618:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473062	51473240	.	+	1	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000618:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473241	51473804	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000618:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473805	51473950	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000618:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473805	51473950	.	+	2	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000618:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473951	51474662	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000618:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51474663	51474864	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000618:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51474663	51474864	.	+	0	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000618:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51474865	51475467	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000618:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51475468	51475573	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000618:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51475468	51475573	.	+	2	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000618:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51475574	51476908	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000618:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51476909	51476993	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000618:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51476909	51476993	.	+	1	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000618:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51476994	51477283	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000618:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51477284	51480729	.	+	.	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000618:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51477284	51477520	.	+	0	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000618:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51477518	51477520	.	+	0	source_transcript=hg002_chrY_paternal_691.5;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.5;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.5,hg002_chrY_paternal_691.5;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000618;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000618;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:NA12877_ch_T0000618;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51466996	51480197	100	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_G0000257;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=NA12877_ch_T0000619;Name=IL9R
NA12877_chrY	CAT	exon	51466996	51467168	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000619:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51467125	51467168	.	+	0	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000619:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51467125	51467127	.	+	0	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:NA12877_ch_T0000619;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51467169	51470788	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000619:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51470789	51470889	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000619:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51470789	51470889	.	+	1	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000619:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51470890	51472266	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000619:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472267	51472404	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000619:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472267	51472404	.	+	2	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000619:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472405	51472833	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000619:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472834	51472945	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000619:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472834	51472945	.	+	2	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000619:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472946	51473061	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000619:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473062	51473240	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000619:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473062	51473240	.	+	1	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000619:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473241	51473804	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000619:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473805	51473950	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000619:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473805	51473950	.	+	2	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000619:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473951	51474665	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000619:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51474666	51474864	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000619:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51474666	51474864	.	+	0	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000619:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51474865	51475467	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000619:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51475468	51475573	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000619:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51475468	51475573	.	+	2	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000619:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51475574	51476908	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000619:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51476909	51476993	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000619:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51476909	51476993	.	+	1	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000619:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51476994	51479195	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000619:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51479196	51480197	.	+	.	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000619:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51479196	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000619:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51479787	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.6;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.6;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.6,hg002_chrY_paternal_691.6;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000619;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000619;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:NA12877_ch_T0000619;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51466998	51480197	100	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_G0000257;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=NA12877_ch_T0000620;Name=IL9R
NA12877_chrY	CAT	exon	51466998	51467168	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000620:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51467125	51467168	.	+	0	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000620:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51467125	51467127	.	+	0	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:NA12877_ch_T0000620;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51467169	51470788	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000620:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51470789	51470889	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000620:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51470789	51470889	.	+	1	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000620:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51470890	51472266	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000620:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472267	51472404	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000620:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472267	51472404	.	+	2	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000620:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472405	51472833	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000620:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472834	51472945	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000620:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472834	51472945	.	+	2	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000620:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472946	51473061	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000620:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473062	51473240	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000620:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473062	51473240	.	+	1	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000620:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473241	51473804	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000620:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473805	51473950	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000620:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473805	51473950	.	+	2	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000620:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473951	51474662	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000620:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51474663	51474864	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000620:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51474663	51474864	.	+	0	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000620:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51474865	51475467	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000620:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51475468	51475573	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000620:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51475468	51475573	.	+	2	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000620:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51475574	51476908	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000620:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51476909	51476993	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000620:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51476909	51476993	.	+	1	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000620:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51476994	51479195	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000620:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51479196	51480197	.	+	.	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000620:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51479196	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000620:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51479787	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.7;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.7;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.7,hg002_chrY_paternal_691.7;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000620;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000620;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:NA12877_ch_T0000620;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51466998	51480197	100	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_G0000257;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=NA12877_ch_T0000621;Name=IL9R
NA12877_chrY	CAT	exon	51466998	51467168	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000621:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51467125	51467168	.	+	0	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000621:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51467125	51467127	.	+	0	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:NA12877_ch_T0000621;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51467169	51470788	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000621:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51470789	51470889	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000621:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51470789	51470889	.	+	1	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000621:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51470890	51472290	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000621:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472291	51472404	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000621:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472291	51472404	.	+	2	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000621:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472405	51472833	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000621:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472834	51472945	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000621:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472834	51472945	.	+	2	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000621:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472946	51473061	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000621:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473062	51473240	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000621:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473062	51473240	.	+	1	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000621:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473241	51473804	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000621:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473805	51473950	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000621:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473805	51473950	.	+	2	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000621:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473951	51474662	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000621:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51474663	51474864	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000621:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51474663	51474864	.	+	0	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000621:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51474865	51475467	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000621:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51475468	51475573	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000621:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51475468	51475573	.	+	2	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000621:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51475574	51476908	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000621:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51476909	51476993	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000621:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51476909	51476993	.	+	1	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000621:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51476994	51479195	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000621:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51479196	51480197	.	+	.	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000621:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51479196	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000621:9;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51479787	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.8;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.8;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.8,hg002_chrY_paternal_691.8;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000621;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000621;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:NA12877_ch_T0000621;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51467000	51480197	100	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_G0000257;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=NA12877_ch_T0000622;Name=IL9R
NA12877_chrY	CAT	exon	51467000	51467168	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000622:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51467169	51470710	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000622:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51470711	51472404	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000622:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472254	51472404	.	+	0	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000622:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51472254	51472256	.	+	0	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:NA12877_ch_T0000622;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472405	51472833	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000622:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472834	51472945	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000622:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472834	51472945	.	+	2	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000622:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472946	51473061	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000622:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473062	51473240	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000622:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473062	51473240	.	+	1	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000622:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473241	51473804	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000622:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473805	51473950	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000622:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473805	51473950	.	+	2	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000622:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473951	51474662	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000622:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51474663	51474864	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000622:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51474663	51474864	.	+	0	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000622:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51474865	51475467	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000622:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51475468	51475573	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000622:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51475468	51475573	.	+	2	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000622:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51475574	51476908	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000622:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51476909	51476993	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000622:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51476909	51476993	.	+	1	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000622:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51476994	51479195	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000622:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51479196	51480197	.	+	.	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000622:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51479196	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000622:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51479787	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.9;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.9;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.9,hg002_chrY_paternal_691.9;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000622;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000622;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:NA12877_ch_T0000622;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51467003	51480197	100	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_G0000257;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=NA12877_ch_T0000623;Name=IL9R
NA12877_chrY	CAT	exon	51467003	51467168	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000623:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51467141	51467168	.	+	0	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000623:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51467141	51467143	.	+	0	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:NA12877_ch_T0000623;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51467169	51473804	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000623:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473805	51473950	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000623:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473805	51473950	.	+	2	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000623:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473951	51474662	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000623:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51474663	51474864	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000623:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51474663	51474864	.	+	0	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000623:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51474865	51475467	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000623:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51475468	51475573	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000623:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51475468	51475573	.	+	2	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000623:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51475574	51476908	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000623:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51476909	51476993	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000623:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51476909	51476993	.	+	1	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000623:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51476994	51479195	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000623:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51479196	51480197	.	+	.	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000623:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51479196	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000623:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51479787	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.10;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.10;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.10;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.10,hg002_chrY_paternal_691.10;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000623;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000623;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:NA12877_ch_T0000623;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51467077	51480197	100	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_G0000257;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=NA12877_ch_T0000624;Name=IL9R
NA12877_chrY	CAT	exon	51467077	51467168	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000624:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51467141	51467168	.	+	0	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000624:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51467141	51467143	.	+	0	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:NA12877_ch_T0000624;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51467169	51472290	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000624:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472291	51472404	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000624:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472291	51472404	.	+	2	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000624:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472405	51472833	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000624:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472834	51472945	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000624:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472834	51472945	.	+	2	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000624:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472946	51473061	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000624:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473062	51473240	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000624:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473062	51473240	.	+	1	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000624:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473241	51473804	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000624:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473805	51473950	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000624:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473805	51473950	.	+	2	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000624:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473951	51474662	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000624:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51474663	51474864	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000624:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51474663	51474864	.	+	0	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000624:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51474865	51475467	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000624:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51475468	51475573	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000624:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51475468	51475573	.	+	2	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000624:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51475574	51476908	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000624:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51476909	51476993	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000624:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51476909	51476993	.	+	1	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000624:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51476994	51479195	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000624:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51479196	51480197	.	+	.	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000624:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51479196	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000624:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51479787	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.11;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.11;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.11;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.11,hg002_chrY_paternal_691.11;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000624;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000624;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:NA12877_ch_T0000624;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51467077	51480197	100	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_G0000257;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=NA12877_ch_T0000625;Name=IL9R
NA12877_chrY	CAT	exon	51467077	51467168	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000625:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51467125	51467168	.	+	0	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000625:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51467125	51467127	.	+	0	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:NA12877_ch_T0000625;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51467169	51470788	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000625:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51470789	51470889	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000625:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51470789	51470889	.	+	1	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000625:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51470890	51472266	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000625:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472267	51472404	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000625:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472267	51472404	.	+	2	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000625:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472405	51472833	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000625:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51472834	51472945	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000625:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51472834	51472945	.	+	2	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000625:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51472946	51473068	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000625:3;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473069	51473240	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000625:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473069	51473240	.	+	1	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000625:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473241	51473833	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000625:4;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51473834	51473950	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000625:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51473834	51473950	.	+	0	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000625:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51473951	51474662	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000625:5;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51474663	51474864	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000625:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51474663	51474864	.	+	0	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000625:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51474865	51475467	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000625:6;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51475468	51475573	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000625:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51475468	51475573	.	+	2	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000625:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51475574	51479195	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000625:7;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51479196	51480197	.	+	.	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000625:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51479196	51479232	.	+	1	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000625:8;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51479230	51479232	.	+	0	source_transcript=hg002_chrY_paternal_691.12;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.12;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.12,hg002_chrY_paternal_691.12;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000625;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000625;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:NA12877_ch_T0000625;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	transcript	51475190	51480197	100	+	.	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000626;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_G0000257;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=NA12877_ch_T0000626;Name=IL9R
NA12877_chrY	CAT	exon	51475190	51475402	.	+	.	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000626;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000626;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000626:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51475218	51475402	.	+	0	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000626;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000626;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000626:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	start_codon	51475218	51475220	.	+	0	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000626;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000626;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=start_codon:NA12877_ch_T0000626;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51475403	51476908	.	+	.	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000626;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000626;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000626:0;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51476909	51476993	.	+	.	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000626;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000626;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000626:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51476909	51476993	.	+	1	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000626;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000626;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000626:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	intron	51476994	51479195	.	+	.	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000626;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000626;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=intron:NA12877_ch_T0000626:1;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	exon	51479196	51480197	.	+	.	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000626;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000626;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=exon:NA12877_ch_T0000626:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	CDS	51479196	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000626;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000626;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=CDS:NA12877_ch_T0000626:2;Name=IL9R;rna_support=False;reference_support=False
NA12877_chrY	CAT	stop_codon	51479787	51479789	.	+	0	source_transcript=hg002_chrY_paternal_691.13;source_transcript_name=hg002_chrY_paternal_691.13;source_gene=hg002_chrY_paternal_691;source_gene_biotype=protein_coding;original_gene_id=hg002_chrY_paternal_691;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=hg002_chrY_paternal_691.13;alignment_mode=liftoff;normalized_transcript_id=hg002_chrY_paternal_691.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=hg002_chrY_paternal_691.13,hg002_chrY_paternal_691.13;AdditionalSources=augTM;transcript_id=NA12877_ch_T0000626;gene_id=NA12877_ch_G0000257;Parent=NA12877_ch_T0000626;transcript_name=hg002_chrY_paternal_691.13;gene_name=IL9R;ID=stop_codon:NA12877_ch_T0000626;Name=IL9R;rna_support=False;reference_support=False